Rmu_sc0002541.1_g000027

BEST Arabidopsis thaliana protein match is

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002541.1
Physical Location & Seq
Forward (+)
97743 .. 100395
2653 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002541.1_g000027.1.cds

Sequence Viewer

Length: 1584 bp
atgaagatgaagatgaaaatgggtcttctcaattccgcagcctgtgttgttttggttattgttagtcaactggttgtggtgagtttaggtgattatataagcagagtctcagaggcttacttatcagctctaggagacccagggatgaagaacccgaatgttagagttgcattggaagcttggaacttctgcaatgaagttggtactgaagctcccaacatgggcagccccagactggccgattgtgccgacctctcttgcccactgatcactgatcctattgttcgtgctcctctaggagtcaagagtgattgtgtgattcatcacagagtaaatgaatcagacaacaacttaagggctggtgataagtttcctgcaagcgattttaagccatacacaaaccctgacttgtatgcaacagaaaaggagctgtatcttgcttctctatgtgaggttaatgattcttcgtcagatccgtggcagttttggatgatcatgcttaagaatgggaatttcgacaagaacactactctttgtcctgaaaatggcaagcctgtaagcagaattgtgacggataggaattttccatgttttggtgaaggttgtatgaatcagccacttgtttaccataactactcgagattagtatcttatggggaccagaatttgtcaataactggaggattttatggaagttatgatcttgatgccgacttgggaaaaggtatagggaacaactcctacttttcagtctcatggcagaaaaatttgagcaccggaagttggattttctcgcacagattgacaacatctgccaagtatccttggctaatgctgtatctacgttcagatgcaacagaaggacctaatggtggttatcactatgatggccgtggcatcatgagaaagttgcctgtctccccaaaatttaaagtaagattgagacttgatgttaggcaaggaggaggatccaacagtcaattttatctccttgatataggaagctgttggaagaacaatggaaaaccatgcgacggtaatgttttgacagatgtgactagatacagtgaaatgattataaatccagcaactacaaactggtgccgaccagataaccttgtctcctgcccaccttaccatgtcactcaaactggtaataggatatatagaaatgaaacatctcggtttccatatgctgcttatcatctctactgtgctcctggaaatgcaaaatatttggagaaaccatatgatatatgtgacccatatagcaacccacaagcacaagaattggtgcaaattcttccccaccctgaatggtctgtacatggctatcctgaaaagaaaggagatggatggattggagatcccaggacatgggagcttgatgttggtgcactctctagccggttgtatttctaccaggacccaggaacagaaccagcaaatcgggtatggtcttcacttaatgtgggtacagaaatatatgtcagtcacccaggagagaccgcggaatggactgtaagtgaatttgatgtattagttcctgaaggtgttggagataatggtactatgtcttactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

527

Amino Acids

58.84

Weight (kDa)

5.55

Isoelectric Point (pI)

33.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1079
AccB1I GGYRCC 1 cut(s) 1101
AccB7I CCANNNNNTGG 2 cut(s) 593, 1377
AccII CGCG 1 cut(s) 1511
AciI CCGC 3 cut(s) 36, 1509, 1511
AclWI GGATC 5 cut(s) 269, 467, 963, 976, 1361
AcoI YGGCCR 2 cut(s) 237, 889
AcsI RAATTY 7 cut(s) 511, 580, 664, 766, 926, 1299, 1529
AcuI CTGAAG 2 cut(s) 228, 1569
AfaI GTAC 4 cut(s) 205, 1326, 1477, 1570
AfiI CCNNNNNNNGG 9 cut(s) 221, 235, 545, 593, 783, 872, 1034, 1377, 1515
AflII CTTAAG 2 cut(s) 352, 500
AjnI CCWGG 6 cut(s) 139, 1219, 1370, 1422, 1429, 1498
AluBI AGCT 6 cut(s) 128, 179, 212, 430, 1005, 1384
AluI AGCT 6 cut(s) 128, 179, 212, 430, 1005, 1384
Alw21I GWGCWC 4 cut(s) 292, 776, 1219, 1399
Alw26I GTCTC 7 cut(s) 112, 129, 757, 922, 937, 1126, 1499
Alw44I GTGCAC 1 cut(s) 1395
AlwI GGATC 5 cut(s) 269, 467, 963, 976, 1361
Ama87I CYCGRG 1 cut(s) 637
AoxI GGCC 2 cut(s) 237, 889
ApaLI GTGCAC 1 cut(s) 1395
ApeKI GCWGC 3 cut(s) 38, 225, 1196
ApoI RAATTY 7 cut(s) 511, 580, 664, 766, 926, 1299, 1529
AspS9I GGNCC 3 cut(s) 658, 863, 1426
AsuHPI GGTGA 5 cut(s) 91, 101, 374, 608, 1487
AvaI CYCGRG 1 cut(s) 637
AvaII GGWCC 3 cut(s) 658, 863, 1426
BaeGI GKGCMC 1 cut(s) 1399
BamHI GGATCC 1 cut(s) 968
BanI GGYRCC 1 cut(s) 1101
BbsI GAAGAC 2 cut(s) 17, 1452
Bbv12I GWGCWC 4 cut(s) 292, 776, 1219, 1399
BbvI GCAGC 3 cut(s) 50, 237, 1183
BccI CCATC 3 cut(s) 881, 1346, 1350
BceAI ACGGC 1 cut(s) 876
BciT130I CCWGG 6 cut(s) 141, 1221, 1372, 1424, 1431, 1500
BciVI GTATCC 1 cut(s) 831
BclI TGATCA 2 cut(s) 267, 492
BcoDI GTCTC 7 cut(s) 112, 129, 757, 922, 937, 1126, 1499
BfaI CTAG 4 cut(s) 131, 296, 1059, 1404
BfrI CTTAAG 2 cut(s) 352, 500
BfuI GTATCC 1 cut(s) 831
BisI GCNGC 3 cut(s) 39, 226, 1197
BlsI GCNGC 3 cut(s) 40, 227, 1198
Bme1390I CCNGG 6 cut(s) 141, 1221, 1372, 1424, 1431, 1500
Bme18I GGWCC 3 cut(s) 658, 863, 1426
BmeT110I CYCGRG 1 cut(s) 637
BmgT120I GGNCC 3 cut(s) 658, 863, 1426
BmiI GGNNCC 4 cut(s) 659, 970, 1103, 1428
BmrFI CCNGG 6 cut(s) 141, 1221, 1372, 1424, 1431, 1500
BmsI GCATC 3 cut(s) 697, 841, 906
BpiI GAAGAC 2 cut(s) 17, 1452
BpmI CTGGAG 1 cut(s) 699
BsaBI GATNNNNATC 1 cut(s) 646
BsaI GGTCTC 2 cut(s) 129, 1499
BsaJI CCNNGG 9 cut(s) 139, 140, 476, 824, 892, 1370, 1429, 1498, 1509
BsaWI WCCGGW 1 cut(s) 776
BsaXI ACNNNNNCTCC 4 cut(s) 196, 226, 1106, 1136
Bsc4I CCNNNNNNNGG 9 cut(s) 221, 235, 545, 593, 783, 872, 1034, 1377, 1515
Bse118I RCCGGY 1 cut(s) 1407
Bse1I ACTGG 5 cut(s) 75, 240, 682, 1103, 1156
Bse3DI GCAATG 1 cut(s) 199
Bse8I GATNNNNATC 1 cut(s) 646
BseBI CCWGG 6 cut(s) 141, 1221, 1372, 1424, 1431, 1500
BseDI CCNNGG 9 cut(s) 139, 140, 476, 824, 892, 1370, 1429, 1498, 1509
BseGI GGATG 3 cut(s) 150, 495, 1361
BseJI GATNNNNATC 1 cut(s) 646
BseLI CCNNNNNNNGG 9 cut(s) 221, 235, 545, 593, 783, 872, 1034, 1377, 1515
BseMI GCAATG 1 cut(s) 199
BseMII CTCAG 1 cut(s) 123
BseNI ACTGG 5 cut(s) 75, 240, 682, 1103, 1156
BseRI GAGGAG 2 cut(s) 282, 978
BseSI GKGCMC 1 cut(s) 1399
BseXI GCAGC 3 cut(s) 50, 237, 1183
Bsh1236I CGCG 1 cut(s) 1511
BshFI GGCC 2 cut(s) 239, 891
BshNI GGYRCC 1 cut(s) 1101
BsiHKAI GWGCWC 4 cut(s) 292, 776, 1219, 1399
BsiHKCI CYCGRG 1 cut(s) 637
BsiSI CCGG 2 cut(s) 777, 1408
BslFI GGGAC 1 cut(s) 671
BslI CCNNNNNNNGG 9 cut(s) 221, 235, 545, 593, 783, 872, 1034, 1377, 1515
BsmAI GTCTC 7 cut(s) 112, 129, 757, 922, 937, 1126, 1499
BsmFI GGGAC 1 cut(s) 671
BsnI GGCC 2 cut(s) 239, 891
Bso31I GGTCTC 2 cut(s) 129, 1499
BsoBI CYCGRG 1 cut(s) 637
Bsp1286I GDGCHC 4 cut(s) 292, 776, 1219, 1399
Bsp1407I TGTACA 1 cut(s) 1324
Bsp143I GATC 7 cut(s) 267, 274, 472, 492, 700, 968, 1366
BspACI CCGC 3 cut(s) 36, 1509, 1511
BspANI GGCC 2 cut(s) 239, 891
BspCNI CTCAG 1 cut(s) 122
BspFNI CGCG 1 cut(s) 1511
BspHI TCATGA 1 cut(s) 900
BspLI GGNNCC 4 cut(s) 659, 970, 1103, 1428
BspPI GGATC 5 cut(s) 269, 467, 963, 976, 1361
BspT107I GGYRCC 1 cut(s) 1101
BspTI CTTAAG 2 cut(s) 352, 500
BspTNI GGTCTC 2 cut(s) 129, 1499
BsrDI GCAATG 1 cut(s) 199
BsrFI RCCGGY 1 cut(s) 1407
BsrGI TGTACA 1 cut(s) 1324
BsrI ACTGG 5 cut(s) 75, 240, 682, 1103, 1156
BssAI RCCGGY 1 cut(s) 1407
BssECI CCNNGG 9 cut(s) 139, 140, 476, 824, 892, 1370, 1429, 1498, 1509
BssMI GATC 7 cut(s) 267, 274, 472, 492, 700, 968, 1366
BssT1I CCWWGG 1 cut(s) 824
Bst2UI CCWGG 6 cut(s) 141, 1221, 1372, 1424, 1431, 1500
Bst4CI ACNGT 5 cut(s) 977, 1037, 1067, 1214, 1522
BstAFI CTTAAG 2 cut(s) 352, 500
BstAUI TGTACA 1 cut(s) 1324
BstC8I GCNNGC 2 cut(s) 379, 551
BstDEI CTNAG 1 cut(s) 109
BstDSI CCRYGG 3 cut(s) 476, 892, 1509
BstF5I GGATG 3 cut(s) 150, 495, 1361
BstFNI CGCG 1 cut(s) 1511
BstKTI GATC 7 cut(s) 270, 277, 475, 495, 703, 971, 1369
BstMAI GTCTC 7 cut(s) 112, 129, 757, 922, 937, 1126, 1499
BstMBI GATC 7 cut(s) 267, 274, 472, 492, 700, 968, 1366
BstMWI GCNNNNNNNGC 2 cut(s) 176, 245
BstNI CCWGG 6 cut(s) 141, 1221, 1372, 1424, 1431, 1500
BstSCI CCNGG 6 cut(s) 139, 1219, 1370, 1422, 1429, 1498
BstSLI GKGCMC 1 cut(s) 1399
BstUI CGCG 1 cut(s) 1511
BstV1I GCAGC 3 cut(s) 50, 237, 1183
BstV2I GAAGAC 2 cut(s) 17, 1452
BstX2I RGATCY 3 cut(s) 472, 968, 1366
BstYI RGATCY 3 cut(s) 472, 968, 1366
BsuI GTATCC 1 cut(s) 831
BsuRI GGCC 2 cut(s) 239, 891
BtgI CCRYGG 3 cut(s) 476, 892, 1509
BtsCI GGATG 3 cut(s) 150, 495, 1361
BtsIMutI CAGTG 3 cut(s) 263, 270, 1072
Cac8I GCNNGC 2 cut(s) 379, 551
CciI TCATGA 1 cut(s) 900
Cfr10I RCCGGY 1 cut(s) 1407
Cfr13I GGNCC 3 cut(s) 658, 863, 1426
Cfr42I CCGCGG 1 cut(s) 1512
Csp6I GTAC 4 cut(s) 204, 1325, 1476, 1569
CviAII CATG 9 cut(s) 220, 496, 588, 756, 901, 1029, 1139, 1328, 1377
CviQI GTAC 4 cut(s) 204, 1325, 1476, 1569
DdeI CTNAG 1 cut(s) 109
DpnI GATC 7 cut(s) 269, 276, 474, 494, 702, 970, 1368
DpnII GATC 7 cut(s) 267, 274, 472, 492, 700, 968, 1366
DraI TTTAAA 1 cut(s) 931
EaeI YGGCCR 2 cut(s) 237, 889
Eco130I CCWWGG 1 cut(s) 824
Eco31I GGTCTC 2 cut(s) 129, 1499
Eco47I GGWCC 3 cut(s) 658, 863, 1426
Eco57I CTGAAG 2 cut(s) 228, 1569
Eco88I CYCGRG 1 cut(s) 637
EcoO109I RGGNCCY 2 cut(s) 863, 1426
EcoRII CCWGG 6 cut(s) 139, 1219, 1370, 1422, 1429, 1498
EcoT14I CCWWGG 1 cut(s) 824
ErhI CCWWGG 1 cut(s) 824
FaeI CATG 9 cut(s) 223, 499, 591, 759, 904, 1032, 1142, 1331, 1380
FaqI GGGAC 1 cut(s) 671
FatI CATG 9 cut(s) 219, 495, 587, 755, 900, 1028, 1138, 1327, 1376
FauNDI CATATG 2 cut(s) 1192, 1249
FbaI TGATCA 2 cut(s) 267, 492
Fnu4HI GCNGC 3 cut(s) 39, 226, 1197
FokI GGATG 3 cut(s) 157, 502, 1368
Fsp4HI GCNGC 3 cut(s) 39, 226, 1197
FspBI CTAG 4 cut(s) 131, 296, 1059, 1404
GluI GCNGC 3 cut(s) 39, 226, 1197
GsuI CTGGAG 1 cut(s) 699
HaeIII GGCC 2 cut(s) 239, 891
HapII CCGG 2 cut(s) 777, 1408
Hin1II CATG 9 cut(s) 223, 499, 591, 759, 904, 1032, 1142, 1331, 1380
HincII GTYRAC 1 cut(s) 68
HindII GTYRAC 1 cut(s) 68
HindIII AAGCTT 1 cut(s) 177
HinfI GANTC 6 cut(s) 105, 300, 319, 338, 461, 610
HpaII CCGG 2 cut(s) 777, 1408
HphI GGTGA 5 cut(s) 91, 101, 374, 608, 1487
Hpy166II GTNNAC 3 cut(s) 68, 625, 1397
Hpy188I TCNGA 4 cut(s) 112, 343, 472, 850
Hpy188III TCNNGA 7 cut(s) 304, 539, 639, 704, 901, 1337, 1547
Hpy8I GTNNAC 3 cut(s) 68, 625, 1397
Hpy99I CGWCG 1 cut(s) 1037
HpyAV CCTTC 3 cut(s) 593, 854, 1544
HpyCH4III ACNGT 5 cut(s) 977, 1037, 1067, 1214, 1522
HpyCH4IV ACGT 1 cut(s) 844
HpyCH4V TGCA 8 cut(s) 170, 192, 377, 416, 854, 1229, 1297, 1397
HpyF10VI GCNNNNNNNGC 2 cut(s) 176, 245
HpyF3I CTNAG 1 cut(s) 109
HpySE526I ACGT 1 cut(s) 844
Hsp92II CATG 9 cut(s) 223, 499, 591, 759, 904, 1032, 1142, 1331, 1380
Ksp22I TGATCA 2 cut(s) 267, 492
KspI CCGCGG 1 cut(s) 1512
Kzo9I GATC 7 cut(s) 267, 274, 472, 492, 700, 968, 1366
LmnI GCTCC 5 cut(s) 217, 295, 427, 1222, 1381
Lsp1109I GCAGC 3 cut(s) 50, 237, 1183
LweI GCATC 3 cut(s) 697, 841, 906
MaeI CTAG 4 cut(s) 131, 296, 1059, 1404
MaeII ACGT 1 cut(s) 844
MaeIII GTNAC 5 cut(s) 568, 1054, 1141, 1259, 1493
MalI GATC 7 cut(s) 269, 276, 474, 494, 702, 970, 1368
MboI GATC 7 cut(s) 267, 274, 472, 492, 700, 968, 1366
MboII GAAGA 8 cut(s) 16, 17, 22, 160, 456, 1024, 1295, 1452
MflI RGATCY 3 cut(s) 472, 968, 1366
MhlI GDGCHC 4 cut(s) 292, 776, 1219, 1399
MlyI GAGTC 2 cut(s) 114, 309
MmeI TCCRAC 4 cut(s) 764, 989, 996, 1537
MnlI CCTC 7 cut(s) 106, 263, 303, 445, 674, 956, 959
MseI TTAA 6 cut(s) 353, 387, 456, 501, 930, 1467
MslI CAYNNNNRTG 1 cut(s) 885
MspA1I CMGCKG 1 cut(s) 1511
MspCI CTTAAG 2 cut(s) 352, 500
MspI CCGG 2 cut(s) 777, 1408
MspR9I CCNGG 6 cut(s) 141, 1221, 1372, 1424, 1431, 1500
MvaI CCWGG 6 cut(s) 141, 1221, 1372, 1424, 1431, 1500
MvnI CGCG 1 cut(s) 1511
MwoI GCNNNNNNNGC 2 cut(s) 176, 245
NdeI CATATG 2 cut(s) 1192, 1249
NdeII GATC 7 cut(s) 267, 274, 472, 492, 700, 968, 1366
NlaIII CATG 9 cut(s) 223, 499, 591, 759, 904, 1032, 1142, 1331, 1380
NlaIV GGNNCC 4 cut(s) 659, 970, 1103, 1428
NmuCI GTSAC 5 cut(s) 568, 1054, 1141, 1259, 1493
PaeR7I CTCGAG 1 cut(s) 637
PagI TCATGA 1 cut(s) 900
PasI CCCWGGG 1 cut(s) 140
PcsI WCGNNNNNNNCGW 1 cut(s) 473
PfeI GAWTC 4 cut(s) 319, 338, 461, 610
PflMI CCANNNNNTGG 2 cut(s) 593, 1377
PfoI TCCNGGA 1 cut(s) 1219
PkrI GCNGC 3 cut(s) 40, 227, 1198
PleI GAGTC 2 cut(s) 113, 308
PpsI GAGTC 2 cut(s) 113, 308
PpuMI RGGWCCY 2 cut(s) 863, 1426
PsiI TTATAA 1 cut(s) 1079
Psp5II RGGWCCY 2 cut(s) 863, 1426
Psp6I CCWGG 6 cut(s) 139, 1219, 1370, 1422, 1429, 1498
PspGI CCWGG 6 cut(s) 139, 1219, 1370, 1422, 1429, 1498
PspN4I GGNNCC 4 cut(s) 659, 970, 1103, 1428
PspPI GGNCC 3 cut(s) 658, 863, 1426
PspPPI RGGWCCY 2 cut(s) 863, 1426
PsrI GAACNNNNNNTAC 2 cut(s) 725, 757
PsuI RGATCY 3 cut(s) 472, 968, 1366
RsaI GTAC 4 cut(s) 205, 1326, 1477, 1570
RsaNI GTAC 4 cut(s) 204, 1325, 1476, 1569
RseI CAYNNNNRTG 1 cut(s) 885
SacII CCGCGG 1 cut(s) 1512
SaqAI TTAA 6 cut(s) 353, 387, 456, 501, 930, 1467
SatI GCNGC 3 cut(s) 39, 226, 1197
Sau3AI GATC 7 cut(s) 267, 274, 472, 492, 700, 968, 1366
Sau96I GGNCC 3 cut(s) 658, 863, 1426
SchI GAGTC 2 cut(s) 114, 309
ScrFI CCNGG 6 cut(s) 141, 1221, 1372, 1424, 1431, 1500
SduI GDGCHC 4 cut(s) 292, 776, 1219, 1399
SfaNI GCATC 3 cut(s) 697, 841, 906
Sfr274I CTCGAG 1 cut(s) 637
Sfr303I CCGCGG 1 cut(s) 1512
SgrBI CCGCGG 1 cut(s) 1512
SinI GGWCC 3 cut(s) 658, 863, 1426
SlaI CTCGAG 1 cut(s) 637
SmiMI CAYNNNNRTG 1 cut(s) 885
SmlI CTYRAG 3 cut(s) 352, 500, 637
SmoI CTYRAG 3 cut(s) 352, 500, 637
SsiI CCGC 3 cut(s) 36, 1509, 1511
SspI AATATT 1 cut(s) 1235
SspMI CTAG 4 cut(s) 131, 296, 1059, 1404
StyD4I CCNGG 6 cut(s) 139, 1219, 1370, 1422, 1429, 1498
StyI CCWWGG 1 cut(s) 824
TaaI ACNGT 5 cut(s) 977, 1037, 1067, 1214, 1522
TaiI ACGT 1 cut(s) 847
TaqI TCGA 2 cut(s) 516, 638
TatI WGTACW 1 cut(s) 1324
TfiI GAWTC 4 cut(s) 319, 338, 461, 610
Tru1I TTAA 6 cut(s) 353, 387, 456, 501, 930, 1467
Tru9I TTAA 6 cut(s) 353, 387, 456, 501, 930, 1467
TscAI CASTG 3 cut(s) 270, 277, 1072
TseFI GTSAC 5 cut(s) 568, 1054, 1141, 1259, 1493
TseI GCWGC 3 cut(s) 38, 225, 1196
Tsp45I GTSAC 5 cut(s) 568, 1054, 1141, 1259, 1493
TspDTI ATGAA 9 cut(s) 17, 23, 29, 161, 210, 311, 351, 623, 1188
TspGWI ACGGA 2 cut(s) 465, 587
TspRI CASTG 3 cut(s) 270, 277, 1072
Van91I CCANNNNNTGG 2 cut(s) 593, 1377
Vha464I CTTAAG 2 cut(s) 352, 500
VneI GTGCAC 1 cut(s) 1395
VpaK11BI GGWCC 3 cut(s) 658, 863, 1426
XapI RAATTY 7 cut(s) 511, 580, 664, 766, 926, 1299, 1529
XhoI CTCGAG 1 cut(s) 637
XspI CTAG 4 cut(s) 131, 296, 1059, 1404
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.