Rroxscaffold_3G00230160

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0007514
Physical Location & Seq
Forward (+)
14763313 .. 14766175
2863 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00230160.1

Sequence Viewer

Length: 1572 bp
ATGAAGATGGGTCTTCTCAATTCAGCAGCCTGTGTTGTTTTGGTTGTTGTTAGTCAACTGGTTGTGGTGAGTTTAGGTGATTATATAAGCAGAGTCTCAGAGGCTTACTTATCAGCTCTAGGAGACCCAGGGATGAAGAACCCGAATGTTAGAGTTGCATTGGAAGCTTGGAACTTCTGCAATGAAGTTGGTACTGAAGCTCCCAACATGGGCAGCCCCAGACTGGCCGATTGTGCCGACCTCTCTTGCCCACTAATCACTGATCCTATTGTTCGTGCTCCTCTAGGAGTCAAGAGTGATTGTGTGATTCATCACAGAGTAAATGAATCAGACAACAACTTAAGGGCTGGTGATAAGTTTCCTGCAAGCGATTTTAAGCCATACACAAACCCTGACTTGTATGCAACAGAAAAGGAGCTGTATCTTGCTTCTCTATGTGAGGTTAATGATTCTTCGTCAGATCCGTGGCAGTTTTGGATGATCATGCTTAAGAATGGGAATTTCGATAAGAACACTACTCTTTGTCCTGAAAATGGCAAGCCTGTAAGCAGAATTGTGACGGATAGGAATTTTCCATGTTTTGGTGAAGGTTGTATGAATCAGCCACTTGTTTACCATAACTACTCTAGATTAGTATCTTATGGGGACCAGAATTTGTCAATAACTGGAGGATTTTACGGAAGTTATGATCTTGATGCCGACTTGGGAAAAGGTATAGGGAACAACTCCTACTTTTCAGTCTCATGGCAGAAAAATTTGAGCACCGGAAGTTGGATTTTCTCGCACAGATTGACAACATCTGCCAAGTATCCTTGGCTAATGTTGTATCTACGTTCAGATGCAACAGAAGGACCTAATGGTGGTTATCACTACAATGGCCGTGGCATCATGAGAAAGTTGCCTGTCTCCCCAAAATTTAAAGTAAGATTGAGACTTGATGTTAAGCAAGGAGGAGGATCCAACAGTCAATTTTATCTCCTTGATATAGGAAGCTGTTGGAAGAACAATGGAAAACCATGCGACGGTAATGTTTTGACAGATGTGACTAGATACAGTGAAATGATTATAAATCCAGCAACTACAAACTGGTGCCGACCAGATAACCTTGTCTCCTGCCCACCTTACCATGTCACTCAAACTGGTAATAGGATATATAGAAATGAAACATCTCGGTTTCCATATGCTGCTTATCATCTCTACTGTGTTCCTGGAAATGCAAAATATTTGGAGAAACCATATGATATATGTGACCCTTATAGCAACCCACAAGCACAAGAATTGGTGCAAATTCTTCCCCACCCTGAATGGTCTGTACATGGCTATCCTGAAAAGAAAGGAGATGGATGGATTGGAGATCCCAAGACATGGGAGCTTGATGTTGGTGCACTCTCTAGCCGGTTGTATTTCTACCAGGACCCAGGAACAGAACCAGCAAAGCGGGTATGGTCTTCACTTAATGTGGGTACAGAAATATATGTCAGTCACCCTGGAGAGACCGCGGAATGGACTGTAAGTGAATTTGATGTCTTAGTTCCTGAAGGTGTTGGAGAGAATGGTACTATGCCTTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

523

Amino Acids

58.31

Weight (kDa)

5.55

Isoelectric Point (pI)

32.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7705 PF24804 38 - 511 4e-252 Domain of unknown function (DUF7705)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1067
AccB1I GGYRCC 1 cut(s) 1089
AccB7I CCANNNNNTGG 2 cut(s) 581, 1365
AccII CGCG 1 cut(s) 1499
AciI CCGC 3 cut(s) 1438, 1497, 1499
AclWI GGATC 5 cut(s) 257, 455, 951, 964, 1349
AcoI YGGCCR 2 cut(s) 225, 877
AcsI RAATTY 7 cut(s) 499, 568, 652, 754, 914, 1287, 1517
AcuI CTGAAG 2 cut(s) 216, 1557
AfaI GTAC 4 cut(s) 193, 1314, 1465, 1558
AfiI CCNNNNNNNGG 9 cut(s) 209, 223, 533, 581, 771, 860, 1022, 1365, 1503
AflII CTTAAG 2 cut(s) 340, 488
AjnI CCWGG 5 cut(s) 127, 1207, 1410, 1417, 1486
AluBI AGCT 6 cut(s) 116, 167, 200, 418, 993, 1372
AluI AGCT 6 cut(s) 116, 167, 200, 418, 993, 1372
Alw21I GWGCWC 3 cut(s) 280, 764, 1387
Alw26I GTCTC 7 cut(s) 100, 117, 745, 910, 925, 1114, 1487
Alw44I GTGCAC 1 cut(s) 1383
AlwI GGATC 5 cut(s) 257, 455, 951, 964, 1349
AoxI GGCC 2 cut(s) 225, 877
ApaLI GTGCAC 1 cut(s) 1383
ApeKI GCWGC 3 cut(s) 26, 213, 1184
ApoI RAATTY 7 cut(s) 499, 568, 652, 754, 914, 1287, 1517
AspS9I GGNCC 3 cut(s) 646, 851, 1414
AsuHPI GGTGA 5 cut(s) 79, 89, 362, 596, 1475
AvaII GGWCC 3 cut(s) 646, 851, 1414
BaeGI GKGCMC 1 cut(s) 1387
BamHI GGATCC 1 cut(s) 956
BanI GGYRCC 1 cut(s) 1089
BbsI GAAGAC 2 cut(s) 5, 1440
Bbv12I GWGCWC 3 cut(s) 280, 764, 1387
BbvI GCAGC 3 cut(s) 38, 225, 1171
BccI CCATC 2 cut(s) 1334, 1338
BceAI ACGGC 1 cut(s) 864
BciT130I CCWGG 5 cut(s) 129, 1209, 1412, 1419, 1488
BciVI GTATCC 1 cut(s) 819
BclI TGATCA 1 cut(s) 480
BcoDI GTCTC 7 cut(s) 100, 117, 745, 910, 925, 1114, 1487
BfaI CTAG 5 cut(s) 119, 284, 627, 1047, 1392
BfrI CTTAAG 2 cut(s) 340, 488
BfuI GTATCC 1 cut(s) 819
BisI GCNGC 3 cut(s) 27, 214, 1185
BlsI GCNGC 3 cut(s) 28, 215, 1186
Bme1390I CCNGG 5 cut(s) 129, 1209, 1412, 1419, 1488
Bme18I GGWCC 3 cut(s) 646, 851, 1414
BmgT120I GGNCC 3 cut(s) 646, 851, 1414
BmiI GGNNCC 4 cut(s) 647, 958, 1091, 1416
BmrFI CCNGG 5 cut(s) 129, 1209, 1412, 1419, 1488
BmsI GCATC 3 cut(s) 685, 829, 894
BpiI GAAGAC 2 cut(s) 5, 1440
BpmI CTGGAG 2 cut(s) 687, 1509
BsaBI GATNNNNATC 1 cut(s) 634
BsaI GGTCTC 2 cut(s) 117, 1487
BsaJI CCNNGG 8 cut(s) 127, 128, 464, 812, 880, 1417, 1486, 1497
BsaWI WCCGGW 1 cut(s) 764
BsaXI ACNNNNNCTCC 4 cut(s) 184, 214, 1094, 1124
Bsc4I CCNNNNNNNGG 9 cut(s) 209, 223, 533, 581, 771, 860, 1022, 1365, 1503
Bse118I RCCGGY 1 cut(s) 1395
Bse1I ACTGG 5 cut(s) 63, 228, 670, 1091, 1144
Bse3DI GCAATG 1 cut(s) 187
Bse8I GATNNNNATC 1 cut(s) 634
BseBI CCWGG 5 cut(s) 129, 1209, 1412, 1419, 1488
BseDI CCNNGG 8 cut(s) 127, 128, 464, 812, 880, 1417, 1486, 1497
BseGI GGATG 3 cut(s) 138, 483, 1349
BseJI GATNNNNATC 1 cut(s) 634
BseLI CCNNNNNNNGG 9 cut(s) 209, 223, 533, 581, 771, 860, 1022, 1365, 1503
BseMI GCAATG 1 cut(s) 187
BseMII CTCAG 1 cut(s) 111
BseNI ACTGG 5 cut(s) 63, 228, 670, 1091, 1144
BseRI GAGGAG 2 cut(s) 270, 966
BseSI GKGCMC 1 cut(s) 1387
BseXI GCAGC 3 cut(s) 38, 225, 1171
Bsh1236I CGCG 1 cut(s) 1499
BshFI GGCC 2 cut(s) 227, 879
BshNI GGYRCC 1 cut(s) 1089
BsiHKAI GWGCWC 3 cut(s) 280, 764, 1387
BsiSI CCGG 2 cut(s) 765, 1396
BslFI GGGAC 1 cut(s) 659
BslI CCNNNNNNNGG 9 cut(s) 209, 223, 533, 581, 771, 860, 1022, 1365, 1503
BsmAI GTCTC 7 cut(s) 100, 117, 745, 910, 925, 1114, 1487
BsmFI GGGAC 1 cut(s) 659
BsnI GGCC 2 cut(s) 227, 879
Bso31I GGTCTC 2 cut(s) 117, 1487
Bsp1286I GDGCHC 3 cut(s) 280, 764, 1387
Bsp1407I TGTACA 1 cut(s) 1312
Bsp143I GATC 6 cut(s) 262, 460, 480, 688, 956, 1354
BspACI CCGC 3 cut(s) 1438, 1497, 1499
BspANI GGCC 2 cut(s) 227, 879
BspCNI CTCAG 1 cut(s) 110
BspFNI CGCG 1 cut(s) 1499
BspHI TCATGA 1 cut(s) 888
BspLI GGNNCC 4 cut(s) 647, 958, 1091, 1416
BspPI GGATC 5 cut(s) 257, 455, 951, 964, 1349
BspT107I GGYRCC 1 cut(s) 1089
BspTI CTTAAG 2 cut(s) 340, 488
BspTNI GGTCTC 2 cut(s) 117, 1487
BsrDI GCAATG 1 cut(s) 187
BsrFI RCCGGY 1 cut(s) 1395
BsrGI TGTACA 1 cut(s) 1312
BsrI ACTGG 5 cut(s) 63, 228, 670, 1091, 1144
BssAI RCCGGY 1 cut(s) 1395
BssECI CCNNGG 8 cut(s) 127, 128, 464, 812, 880, 1417, 1486, 1497
BssMI GATC 6 cut(s) 262, 460, 480, 688, 956, 1354
BssT1I CCWWGG 1 cut(s) 812
Bst2UI CCWGG 5 cut(s) 129, 1209, 1412, 1419, 1488
Bst4CI ACNGT 5 cut(s) 965, 1025, 1055, 1202, 1510
BstAFI CTTAAG 2 cut(s) 340, 488
BstAUI TGTACA 1 cut(s) 1312
BstC8I GCNNGC 2 cut(s) 367, 539
BstDEI CTNAG 2 cut(s) 97, 1528
BstDSI CCRYGG 3 cut(s) 464, 880, 1497
BstF5I GGATG 3 cut(s) 138, 483, 1349
BstFNI CGCG 1 cut(s) 1499
BstKTI GATC 6 cut(s) 265, 463, 483, 691, 959, 1357
BstMAI GTCTC 7 cut(s) 100, 117, 745, 910, 925, 1114, 1487
BstMBI GATC 6 cut(s) 262, 460, 480, 688, 956, 1354
BstMWI GCNNNNNNNGC 2 cut(s) 164, 233
BstNI CCWGG 5 cut(s) 129, 1209, 1412, 1419, 1488
BstSCI CCNGG 5 cut(s) 127, 1207, 1410, 1417, 1486
BstSLI GKGCMC 1 cut(s) 1387
BstUI CGCG 1 cut(s) 1499
BstV1I GCAGC 3 cut(s) 38, 225, 1171
BstV2I GAAGAC 2 cut(s) 5, 1440
BstX2I RGATCY 3 cut(s) 460, 956, 1354
BstYI RGATCY 3 cut(s) 460, 956, 1354
BsuI GTATCC 1 cut(s) 819
BsuRI GGCC 2 cut(s) 227, 879
BtgI CCRYGG 3 cut(s) 464, 880, 1497
BtsCI GGATG 3 cut(s) 138, 483, 1349
BtsIMutI CAGTG 2 cut(s) 258, 1060
Cac8I GCNNGC 2 cut(s) 367, 539
CciI TCATGA 1 cut(s) 888
Cfr10I RCCGGY 1 cut(s) 1395
Cfr13I GGNCC 3 cut(s) 646, 851, 1414
Cfr42I CCGCGG 1 cut(s) 1500
Csp6I GTAC 4 cut(s) 192, 1313, 1464, 1557
CspCI CAANNNNNGTGG 2 cut(s) 862, 897
CviAII CATG 9 cut(s) 208, 484, 576, 744, 889, 1017, 1127, 1316, 1365
CviQI GTAC 4 cut(s) 192, 1313, 1464, 1557
DdeI CTNAG 2 cut(s) 97, 1528
DpnI GATC 6 cut(s) 264, 462, 482, 690, 958, 1356
DpnII GATC 6 cut(s) 262, 460, 480, 688, 956, 1354
DraI TTTAAA 1 cut(s) 919
EaeI YGGCCR 2 cut(s) 225, 877
Eco130I CCWWGG 1 cut(s) 812
Eco31I GGTCTC 2 cut(s) 117, 1487
Eco47I GGWCC 3 cut(s) 646, 851, 1414
Eco57I CTGAAG 2 cut(s) 216, 1557
EcoO109I RGGNCCY 2 cut(s) 851, 1414
EcoRII CCWGG 5 cut(s) 127, 1207, 1410, 1417, 1486
EcoT14I CCWWGG 1 cut(s) 812
ErhI CCWWGG 1 cut(s) 812
FaeI CATG 9 cut(s) 211, 487, 579, 747, 892, 1020, 1130, 1319, 1368
FaqI GGGAC 1 cut(s) 659
FatI CATG 9 cut(s) 207, 483, 575, 743, 888, 1016, 1126, 1315, 1364
FauI CCCGC 1 cut(s) 1431
FauNDI CATATG 2 cut(s) 1180, 1237
FbaI TGATCA 1 cut(s) 480
Fnu4HI GCNGC 3 cut(s) 27, 214, 1185
FokI GGATG 3 cut(s) 145, 490, 1356
Fsp4HI GCNGC 3 cut(s) 27, 214, 1185
FspBI CTAG 5 cut(s) 119, 284, 627, 1047, 1392
GluI GCNGC 3 cut(s) 27, 214, 1185
GsuI CTGGAG 2 cut(s) 687, 1509
HaeIII GGCC 2 cut(s) 227, 879
HapII CCGG 2 cut(s) 765, 1396
Hin1II CATG 9 cut(s) 211, 487, 579, 747, 892, 1020, 1130, 1319, 1368
HincII GTYRAC 1 cut(s) 56
HindII GTYRAC 1 cut(s) 56
HindIII AAGCTT 1 cut(s) 165
HinfI GANTC 6 cut(s) 93, 288, 307, 326, 449, 598
HpaII CCGG 2 cut(s) 765, 1396
HphI GGTGA 5 cut(s) 79, 89, 362, 596, 1475
Hpy166II GTNNAC 3 cut(s) 56, 613, 1385
Hpy188I TCNGA 4 cut(s) 100, 331, 460, 838
Hpy188III TCNNGA 7 cut(s) 292, 527, 627, 692, 889, 1325, 1535
Hpy8I GTNNAC 3 cut(s) 56, 613, 1385
Hpy99I CGWCG 1 cut(s) 1025
HpyAV CCTTC 3 cut(s) 581, 842, 1532
HpyCH4III ACNGT 5 cut(s) 965, 1025, 1055, 1202, 1510
HpyCH4IV ACGT 1 cut(s) 832
HpyCH4V TGCA 8 cut(s) 158, 180, 365, 404, 842, 1217, 1285, 1385
HpyF10VI GCNNNNNNNGC 2 cut(s) 164, 233
HpyF3I CTNAG 2 cut(s) 97, 1528
HpySE526I ACGT 1 cut(s) 832
Hsp92II CATG 9 cut(s) 211, 487, 579, 747, 892, 1020, 1130, 1319, 1368
Ksp22I TGATCA 1 cut(s) 480
KspI CCGCGG 1 cut(s) 1500
Kzo9I GATC 6 cut(s) 262, 460, 480, 688, 956, 1354
LmnI GCTCC 4 cut(s) 205, 283, 415, 1369
Lsp1109I GCAGC 3 cut(s) 38, 225, 1171
LweI GCATC 3 cut(s) 685, 829, 894
MaeI CTAG 5 cut(s) 119, 284, 627, 1047, 1392
MaeII ACGT 1 cut(s) 832
MaeIII GTNAC 5 cut(s) 556, 1042, 1129, 1247, 1481
MalI GATC 6 cut(s) 264, 462, 482, 690, 958, 1356
MboI GATC 6 cut(s) 262, 460, 480, 688, 956, 1354
MboII GAAGA 7 cut(s) 5, 16, 148, 444, 1012, 1283, 1440
MflI RGATCY 3 cut(s) 460, 956, 1354
MhlI GDGCHC 3 cut(s) 280, 764, 1387
MlyI GAGTC 2 cut(s) 102, 297
MmeI TCCRAC 4 cut(s) 752, 977, 984, 1525
MnlI CCTC 7 cut(s) 94, 251, 291, 433, 662, 944, 947
MseI TTAA 7 cut(s) 341, 375, 444, 489, 918, 942, 1455
MslI CAYNNNNRTG 1 cut(s) 873
MspA1I CMGCKG 1 cut(s) 1499
MspCI CTTAAG 2 cut(s) 340, 488
MspI CCGG 2 cut(s) 765, 1396
MspR9I CCNGG 5 cut(s) 129, 1209, 1412, 1419, 1488
MvaI CCWGG 5 cut(s) 129, 1209, 1412, 1419, 1488
MvnI CGCG 1 cut(s) 1499
MwoI GCNNNNNNNGC 2 cut(s) 164, 233
NdeI CATATG 2 cut(s) 1180, 1237
NdeII GATC 6 cut(s) 262, 460, 480, 688, 956, 1354
NlaIII CATG 9 cut(s) 211, 487, 579, 747, 892, 1020, 1130, 1319, 1368
NlaIV GGNNCC 4 cut(s) 647, 958, 1091, 1416
NmuCI GTSAC 5 cut(s) 556, 1042, 1129, 1247, 1481
PagI TCATGA 1 cut(s) 888
PasI CCCWGGG 1 cut(s) 128
PcsI WCGNNNNNNNCGW 1 cut(s) 461
PfeI GAWTC 4 cut(s) 307, 326, 449, 598
PflMI CCANNNNNTGG 2 cut(s) 581, 1365
PfoI TCCNGGA 1 cut(s) 1207
PkrI GCNGC 3 cut(s) 28, 215, 1186
PleI GAGTC 2 cut(s) 101, 296
PpsI GAGTC 2 cut(s) 101, 296
PpuMI RGGWCCY 2 cut(s) 851, 1414
PsiI TTATAA 1 cut(s) 1067
Psp5II RGGWCCY 2 cut(s) 851, 1414
Psp6I CCWGG 5 cut(s) 127, 1207, 1410, 1417, 1486
PspGI CCWGG 5 cut(s) 127, 1207, 1410, 1417, 1486
PspN4I GGNNCC 4 cut(s) 647, 958, 1091, 1416
PspPI GGNCC 3 cut(s) 646, 851, 1414
PspPPI RGGWCCY 2 cut(s) 851, 1414
PsrI GAACNNNNNNTAC 2 cut(s) 713, 745
PsuI RGATCY 3 cut(s) 460, 956, 1354
RsaI GTAC 4 cut(s) 193, 1314, 1465, 1558
RsaNI GTAC 4 cut(s) 192, 1313, 1464, 1557
RseI CAYNNNNRTG 1 cut(s) 873
SacII CCGCGG 1 cut(s) 1500
SaqAI TTAA 7 cut(s) 341, 375, 444, 489, 918, 942, 1455
SatI GCNGC 3 cut(s) 27, 214, 1185
Sau3AI GATC 6 cut(s) 262, 460, 480, 688, 956, 1354
Sau96I GGNCC 3 cut(s) 646, 851, 1414
SchI GAGTC 2 cut(s) 102, 297
ScrFI CCNGG 5 cut(s) 129, 1209, 1412, 1419, 1488
SduI GDGCHC 3 cut(s) 280, 764, 1387
SfaNI GCATC 3 cut(s) 685, 829, 894
Sfr303I CCGCGG 1 cut(s) 1500
SgrBI CCGCGG 1 cut(s) 1500
SinI GGWCC 3 cut(s) 646, 851, 1414
SmiMI CAYNNNNRTG 1 cut(s) 873
SmlI CTYRAG 2 cut(s) 340, 488
SmoI CTYRAG 2 cut(s) 340, 488
SsiI CCGC 3 cut(s) 1438, 1497, 1499
SspI AATATT 1 cut(s) 1223
SspMI CTAG 5 cut(s) 119, 284, 627, 1047, 1392
StyD4I CCNGG 5 cut(s) 127, 1207, 1410, 1417, 1486
StyI CCWWGG 1 cut(s) 812
TaaI ACNGT 5 cut(s) 965, 1025, 1055, 1202, 1510
TaiI ACGT 1 cut(s) 835
TaqI TCGA 1 cut(s) 504
TatI WGTACW 1 cut(s) 1312
TfiI GAWTC 4 cut(s) 307, 326, 449, 598
Tru1I TTAA 7 cut(s) 341, 375, 444, 489, 918, 942, 1455
Tru9I TTAA 7 cut(s) 341, 375, 444, 489, 918, 942, 1455
TscAI CASTG 2 cut(s) 265, 1060
TseFI GTSAC 5 cut(s) 556, 1042, 1129, 1247, 1481
TseI GCWGC 3 cut(s) 26, 213, 1184
Tsp45I GTSAC 5 cut(s) 556, 1042, 1129, 1247, 1481
TspDTI ATGAA 7 cut(s) 17, 149, 198, 299, 339, 611, 1176
TspGWI ACGGA 3 cut(s) 453, 575, 693
TspRI CASTG 2 cut(s) 265, 1060
Van91I CCANNNNNTGG 2 cut(s) 581, 1365
Vha464I CTTAAG 2 cut(s) 340, 488
VneI GTGCAC 1 cut(s) 1383
VpaK11BI GGWCC 3 cut(s) 646, 851, 1414
XapI RAATTY 7 cut(s) 499, 568, 652, 754, 914, 1287, 1517
XbaI TCTAGA 1 cut(s) 626
XspI CTAG 5 cut(s) 119, 284, 627, 1047, 1392
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.