Rw7G034140

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0007514
Physical Location & Seq
Forward (+)
50589530 .. 50592489
2960 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G034140.1

Sequence Viewer

Length: 1578 bp
ATGAAGATGAAAATGGGTCTTCTCAATTCCGCAGCCTGTGTTGTTTTGGTTGTTGTTAGTCAACTGGTTGTGGTGAGTTTAGGTGATTATATAAGCAGAGTCTCAGAGGCTTACTTATCAGCTCTAGGAGACCCTGGGATGAAGAACCCGAACGTCAGAGTTGCATTGGAAGCTTGGAACTTCTGCAATGAAGTTGGTACTGAAGCTCCCAACATGGGCAGCCCCAGACTGGCCGATTGTGCCGACCTCTCTTGCCCACTGATCACTGATCCTATTGTTCGTGCTCCTCTAGGAGGCAAGAGTGATTGTGTGATTCATCACAGAGTAAATGAATCAGACAACAACTTAAGGGCTGGTGATAAGTTTCCTGCAAGCGATTTTAAGCCATACACAAACCCTGACTTGTATGCAACAGAAAAGGAGCTGTATCTTGCTTCTCTATGTGAGGTTAATGATTCTTCGTCAGATCCGTGGCAGTTTTGGATGATCATGCTTAAGAATGGGAATTTCGACAAGAACACTACTCTTTGTCCTGAAAATGGCAAGCCTGTAAGCAGAATTGTGACGGATAGGAATTTTCCATGTTTTGGTGAAGGTTGTATGAATCAGCCACTTGTTTACCATAACTACTCGAGATTAGTATCTTATGGGGACCAGAATTTGTCAATAACTGGAGGATTTTATGGAAGTTATGATCTTGATGCCGACTTGGGAAAAGGTATAGGGAACAACTCCTACTTTTCAGTCTCATGGCAGAAAAATTTGAGCACCGGAAGTTGGATTTTCTCGCACAGATTGACAACATCTACCAAGTATCCTTGGCTAATGCTGTATCTACGTTCAGATGCAACAGAAGGACCTAATGGTGGTTATCACTACGACGGCCGTGGCATCATGAGAAAGTTGCCTGTCTCCCCAAAATTTAAAGTAAGATTGAGACTTGATGTTAAGCAAGGAGGAGGATCCAACAGTCAATTTTATCTCCTTGATATAGGAAGCTGTTGGAAGAACAATGGAAAACCATGCGACGGTAATGTTTTGACAGATGTGACTAGATACAGTGAAATGATTATAAATCCAGCAACTACAAACTGGTGCCGACCAGATAACCTTGTCTCCTGCCCACCTTACCATGTCACTCAAACTGGTAATAGGATATATAGAAATGAAACATCTCGGTTTCCATATGCTGCTTATCATCTCTACTGTGTTCCTGGAAATGCAAAATATTTGGAGAAACCATATGATATATGTGACCCATATAGCAACCCACAAGCACAAGAATTGGTGCAAATTCTTCCCCACCCTGAATGGTCTGTACATGGCTATCCTGAAAAGAAAGGAGATGGATGGATTGGAGATCCCAGGACATGGGAGCTTGATGTTGGTGCACTCTCTAGCCGGTTGTATTTCTACCAGGACCCAGGAACAGAACCAGCAAAGCGGGTATGGTCTTCACTTAATGTGGGTACAGAAATATATGTCAGTCACCCTGGAGAGACCGCGGAATGGACTGTAAGTGAATTTGATGTCTTAGTTCCTGAAGGTGTTGGAGATAATGGTACTATGCCTTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

525

Amino Acids

58.58

Weight (kDa)

5.55

Isoelectric Point (pI)

33.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7705 PF24804 40 - 513 1.2e-252 Domain of unknown function (DUF7705)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1073
AccB1I GGYRCC 1 cut(s) 1095
AccB7I CCANNNNNTGG 2 cut(s) 587, 1371
AccII CGCG 1 cut(s) 1505
AciI CCGC 4 cut(s) 30, 1444, 1503, 1505
AclWI GGATC 5 cut(s) 263, 461, 957, 970, 1355
AcoI YGGCCR 2 cut(s) 231, 883
AcsI RAATTY 7 cut(s) 505, 574, 658, 760, 920, 1293, 1523
AcuI CTGAAG 2 cut(s) 222, 1563
AfaI GTAC 4 cut(s) 199, 1320, 1471, 1564
AflII CTTAAG 2 cut(s) 346, 494
AjnI CCWGG 6 cut(s) 133, 1213, 1364, 1416, 1423, 1492
AluBI AGCT 6 cut(s) 122, 173, 206, 424, 999, 1378
AluI AGCT 6 cut(s) 122, 173, 206, 424, 999, 1378
Alw21I GWGCWC 3 cut(s) 286, 770, 1393
Alw26I GTCTC 7 cut(s) 106, 123, 751, 916, 931, 1120, 1493
Alw44I GTGCAC 1 cut(s) 1389
AlwI GGATC 5 cut(s) 263, 461, 957, 970, 1355
Ama87I CYCGRG 1 cut(s) 631
AoxI GGCC 2 cut(s) 231, 883
ApaLI GTGCAC 1 cut(s) 1389
ApeKI GCWGC 3 cut(s) 32, 219, 1190
ApoI RAATTY 7 cut(s) 505, 574, 658, 760, 920, 1293, 1523
AspS9I GGNCC 3 cut(s) 652, 857, 1420
AsuHPI GGTGA 5 cut(s) 85, 95, 368, 602, 1481
AvaI CYCGRG 1 cut(s) 631
AvaII GGWCC 3 cut(s) 652, 857, 1420
BaeGI GKGCMC 1 cut(s) 1393
BamHI GGATCC 1 cut(s) 962
BanI GGYRCC 1 cut(s) 1095
BbsI GAAGAC 2 cut(s) 11, 1446
Bbv12I GWGCWC 3 cut(s) 286, 770, 1393
BbvI GCAGC 3 cut(s) 44, 231, 1177
BccI CCATC 2 cut(s) 1340, 1344
BceAI ACGGC 2 cut(s) 870, 898
BciT130I CCWGG 6 cut(s) 135, 1215, 1366, 1418, 1425, 1494
BciVI GTATCC 1 cut(s) 825
BclI TGATCA 2 cut(s) 261, 486
BcoDI GTCTC 7 cut(s) 106, 123, 751, 916, 931, 1120, 1493
BfaI CTAG 4 cut(s) 125, 290, 1053, 1398
BfrI CTTAAG 2 cut(s) 346, 494
BfuI GTATCC 1 cut(s) 825
BisI GCNGC 3 cut(s) 33, 220, 1191
BlsI GCNGC 3 cut(s) 34, 221, 1192
Bme1390I CCNGG 6 cut(s) 135, 1215, 1366, 1418, 1425, 1494
Bme18I GGWCC 3 cut(s) 652, 857, 1420
BmeT110I CYCGRG 1 cut(s) 631
BmgT120I GGNCC 3 cut(s) 652, 857, 1420
BmiI GGNNCC 4 cut(s) 653, 964, 1097, 1422
BmrFI CCNGG 6 cut(s) 135, 1215, 1366, 1418, 1425, 1494
BmsI GCATC 3 cut(s) 691, 835, 900
BpiI GAAGAC 2 cut(s) 11, 1446
BpmI CTGGAG 2 cut(s) 693, 1515
BsaBI GATNNNNATC 1 cut(s) 640
BsaI GGTCTC 2 cut(s) 123, 1493
BsaJI CCNNGG 9 cut(s) 133, 134, 470, 818, 886, 1364, 1423, 1492, 1503
BsaWI WCCGGW 1 cut(s) 770
BsaXI ACNNNNNCTCC 4 cut(s) 190, 220, 1100, 1130
Bse118I RCCGGY 1 cut(s) 1401
Bse1I ACTGG 5 cut(s) 69, 234, 676, 1097, 1150
Bse3DI GCAATG 1 cut(s) 193
Bse8I GATNNNNATC 1 cut(s) 640
BseBI CCWGG 6 cut(s) 135, 1215, 1366, 1418, 1425, 1494
BseDI CCNNGG 9 cut(s) 133, 134, 470, 818, 886, 1364, 1423, 1492, 1503
BseGI GGATG 3 cut(s) 144, 489, 1355
BseJI GATNNNNATC 1 cut(s) 640
BseMI GCAATG 1 cut(s) 193
BseMII CTCAG 1 cut(s) 117
BseNI ACTGG 5 cut(s) 69, 234, 676, 1097, 1150
BseRI GAGGAG 2 cut(s) 276, 972
BseSI GKGCMC 1 cut(s) 1393
BseX3I CGGCCG 1 cut(s) 883
BseXI GCAGC 3 cut(s) 44, 231, 1177
Bsh1236I CGCG 1 cut(s) 1505
Bsh1285I CGRYCG 1 cut(s) 886
BshFI GGCC 2 cut(s) 233, 885
BshNI GGYRCC 1 cut(s) 1095
BsiEI CGRYCG 1 cut(s) 886
BsiHKAI GWGCWC 3 cut(s) 286, 770, 1393
BsiHKCI CYCGRG 1 cut(s) 631
BsiSI CCGG 2 cut(s) 771, 1402
BslFI GGGAC 1 cut(s) 665
BsmAI GTCTC 7 cut(s) 106, 123, 751, 916, 931, 1120, 1493
BsmFI GGGAC 1 cut(s) 665
BsnI GGCC 2 cut(s) 233, 885
Bso31I GGTCTC 2 cut(s) 123, 1493
BsoBI CYCGRG 1 cut(s) 631
Bsp1286I GDGCHC 3 cut(s) 286, 770, 1393
Bsp1407I TGTACA 1 cut(s) 1318
Bsp143I GATC 7 cut(s) 261, 268, 466, 486, 694, 962, 1360
BspACI CCGC 4 cut(s) 30, 1444, 1503, 1505
BspANI GGCC 2 cut(s) 233, 885
BspCNI CTCAG 1 cut(s) 116
BspFNI CGCG 1 cut(s) 1505
BspHI TCATGA 1 cut(s) 894
BspLI GGNNCC 4 cut(s) 653, 964, 1097, 1422
BspPI GGATC 5 cut(s) 263, 461, 957, 970, 1355
BspT107I GGYRCC 1 cut(s) 1095
BspTI CTTAAG 2 cut(s) 346, 494
BspTNI GGTCTC 2 cut(s) 123, 1493
BsrDI GCAATG 1 cut(s) 193
BsrFI RCCGGY 1 cut(s) 1401
BsrGI TGTACA 1 cut(s) 1318
BsrI ACTGG 5 cut(s) 69, 234, 676, 1097, 1150
BssAI RCCGGY 1 cut(s) 1401
BssECI CCNNGG 9 cut(s) 133, 134, 470, 818, 886, 1364, 1423, 1492, 1503
BssMI GATC 7 cut(s) 261, 268, 466, 486, 694, 962, 1360
BssT1I CCWWGG 1 cut(s) 818
Bst2UI CCWGG 6 cut(s) 135, 1215, 1366, 1418, 1425, 1494
Bst4CI ACNGT 5 cut(s) 971, 1031, 1061, 1208, 1516
BstAFI CTTAAG 2 cut(s) 346, 494
BstAUI TGTACA 1 cut(s) 1318
BstC8I GCNNGC 2 cut(s) 373, 545
BstDEI CTNAG 2 cut(s) 103, 1534
BstDSI CCRYGG 3 cut(s) 470, 886, 1503
BstENI CCTNNNNNAGG 1 cut(s) 291
BstF5I GGATG 3 cut(s) 144, 489, 1355
BstFNI CGCG 1 cut(s) 1505
BstKTI GATC 7 cut(s) 264, 271, 469, 489, 697, 965, 1363
BstMAI GTCTC 7 cut(s) 106, 123, 751, 916, 931, 1120, 1493
BstMBI GATC 7 cut(s) 261, 268, 466, 486, 694, 962, 1360
BstMCI CGRYCG 1 cut(s) 886
BstMWI GCNNNNNNNGC 2 cut(s) 170, 239
BstNI CCWGG 6 cut(s) 135, 1215, 1366, 1418, 1425, 1494
BstSCI CCNGG 6 cut(s) 133, 1213, 1364, 1416, 1423, 1492
BstSLI GKGCMC 1 cut(s) 1393
BstUI CGCG 1 cut(s) 1505
BstV1I GCAGC 3 cut(s) 44, 231, 1177
BstV2I GAAGAC 2 cut(s) 11, 1446
BstX2I RGATCY 3 cut(s) 466, 962, 1360
BstYI RGATCY 3 cut(s) 466, 962, 1360
BstZI CGGCCG 1 cut(s) 883
BsuI GTATCC 1 cut(s) 825
BsuRI GGCC 2 cut(s) 233, 885
BtgI CCRYGG 3 cut(s) 470, 886, 1503
BtsCI GGATG 3 cut(s) 144, 489, 1355
BtsIMutI CAGTG 3 cut(s) 257, 264, 1066
Cac8I GCNNGC 2 cut(s) 373, 545
CciI TCATGA 1 cut(s) 894
Cfr10I RCCGGY 1 cut(s) 1401
Cfr13I GGNCC 3 cut(s) 652, 857, 1420
Cfr42I CCGCGG 1 cut(s) 1506
Csp6I GTAC 4 cut(s) 198, 1319, 1470, 1563
CviAII CATG 9 cut(s) 214, 490, 582, 750, 895, 1023, 1133, 1322, 1371
CviQI GTAC 4 cut(s) 198, 1319, 1470, 1563
DdeI CTNAG 2 cut(s) 103, 1534
DpnI GATC 7 cut(s) 263, 270, 468, 488, 696, 964, 1362
DpnII GATC 7 cut(s) 261, 268, 466, 486, 694, 962, 1360
DraI TTTAAA 1 cut(s) 925
EaeI YGGCCR 2 cut(s) 231, 883
EagI CGGCCG 1 cut(s) 883
EclXI CGGCCG 1 cut(s) 883
Eco130I CCWWGG 1 cut(s) 818
Eco31I GGTCTC 2 cut(s) 123, 1493
Eco47I GGWCC 3 cut(s) 652, 857, 1420
Eco52I CGGCCG 1 cut(s) 883
Eco57I CTGAAG 2 cut(s) 222, 1563
Eco88I CYCGRG 1 cut(s) 631
EcoNI CCTNNNNNAGG 1 cut(s) 291
EcoO109I RGGNCCY 2 cut(s) 857, 1420
EcoRII CCWGG 6 cut(s) 133, 1213, 1364, 1416, 1423, 1492
EcoT14I CCWWGG 1 cut(s) 818
ErhI CCWWGG 1 cut(s) 818
FaeI CATG 9 cut(s) 217, 493, 585, 753, 898, 1026, 1136, 1325, 1374
FaqI GGGAC 1 cut(s) 665
FatI CATG 9 cut(s) 213, 489, 581, 749, 894, 1022, 1132, 1321, 1370
FauI CCCGC 1 cut(s) 1437
FauNDI CATATG 2 cut(s) 1186, 1243
FbaI TGATCA 2 cut(s) 261, 486
Fnu4HI GCNGC 3 cut(s) 33, 220, 1191
FokI GGATG 3 cut(s) 151, 496, 1362
Fsp4HI GCNGC 3 cut(s) 33, 220, 1191
FspBI CTAG 4 cut(s) 125, 290, 1053, 1398
GluI GCNGC 3 cut(s) 33, 220, 1191
GsuI CTGGAG 2 cut(s) 693, 1515
HaeIII GGCC 2 cut(s) 233, 885
HapII CCGG 2 cut(s) 771, 1402
Hin1II CATG 9 cut(s) 217, 493, 585, 753, 898, 1026, 1136, 1325, 1374
HincII GTYRAC 1 cut(s) 62
HindII GTYRAC 1 cut(s) 62
HindIII AAGCTT 1 cut(s) 171
HinfI GANTC 5 cut(s) 99, 313, 332, 455, 604
HpaII CCGG 2 cut(s) 771, 1402
HphI GGTGA 5 cut(s) 85, 95, 368, 602, 1481
Hpy166II GTNNAC 3 cut(s) 62, 619, 1391
Hpy188I TCNGA 5 cut(s) 106, 158, 337, 466, 844
Hpy188III TCNNGA 6 cut(s) 533, 633, 698, 895, 1331, 1541
Hpy8I GTNNAC 3 cut(s) 62, 619, 1391
Hpy99I CGWCG 2 cut(s) 884, 1031
HpyAV CCTTC 3 cut(s) 587, 848, 1538
HpyCH4III ACNGT 5 cut(s) 971, 1031, 1061, 1208, 1516
HpyCH4IV ACGT 2 cut(s) 153, 838
HpyCH4V TGCA 8 cut(s) 164, 186, 371, 410, 848, 1223, 1291, 1391
HpyF10VI GCNNNNNNNGC 2 cut(s) 170, 239
HpyF3I CTNAG 2 cut(s) 103, 1534
HpySE526I ACGT 2 cut(s) 153, 838
Hsp92II CATG 9 cut(s) 217, 493, 585, 753, 898, 1026, 1136, 1325, 1374
Ksp22I TGATCA 2 cut(s) 261, 486
KspI CCGCGG 1 cut(s) 1506
Kzo9I GATC 7 cut(s) 261, 268, 466, 486, 694, 962, 1360
LmnI GCTCC 4 cut(s) 211, 289, 421, 1375
Lsp1109I GCAGC 3 cut(s) 44, 231, 1177
LweI GCATC 3 cut(s) 691, 835, 900
MaeI CTAG 4 cut(s) 125, 290, 1053, 1398
MaeII ACGT 2 cut(s) 153, 838
MaeIII GTNAC 5 cut(s) 562, 1048, 1135, 1253, 1487
MalI GATC 7 cut(s) 263, 270, 468, 488, 696, 964, 1362
MboI GATC 7 cut(s) 261, 268, 466, 486, 694, 962, 1360
MboII GAAGA 7 cut(s) 11, 16, 154, 450, 1018, 1289, 1446
MflI RGATCY 3 cut(s) 466, 962, 1360
MhlI GDGCHC 3 cut(s) 286, 770, 1393
MlyI GAGTC 1 cut(s) 108
MmeI TCCRAC 4 cut(s) 758, 983, 990, 1531
MnlI CCTC 8 cut(s) 100, 257, 287, 297, 439, 668, 950, 953
MseI TTAA 7 cut(s) 347, 381, 450, 495, 924, 948, 1461
MspA1I CMGCKG 1 cut(s) 1505
MspCI CTTAAG 2 cut(s) 346, 494
MspI CCGG 2 cut(s) 771, 1402
MspR9I CCNGG 6 cut(s) 135, 1215, 1366, 1418, 1425, 1494
MvaI CCWGG 6 cut(s) 135, 1215, 1366, 1418, 1425, 1494
MvnI CGCG 1 cut(s) 1505
MwoI GCNNNNNNNGC 2 cut(s) 170, 239
NdeI CATATG 2 cut(s) 1186, 1243
NdeII GATC 7 cut(s) 261, 268, 466, 486, 694, 962, 1360
NlaIII CATG 9 cut(s) 217, 493, 585, 753, 898, 1026, 1136, 1325, 1374
NlaIV GGNNCC 4 cut(s) 653, 964, 1097, 1422
NmuCI GTSAC 5 cut(s) 562, 1048, 1135, 1253, 1487
PaeR7I CTCGAG 1 cut(s) 631
PagI TCATGA 1 cut(s) 894
PasI CCCWGGG 1 cut(s) 134
PcsI WCGNNNNNNNCGW 1 cut(s) 467
PfeI GAWTC 4 cut(s) 313, 332, 455, 604
PflMI CCANNNNNTGG 2 cut(s) 587, 1371
PfoI TCCNGGA 1 cut(s) 1213
PkrI GCNGC 3 cut(s) 34, 221, 1192
PleI GAGTC 1 cut(s) 107
PpsI GAGTC 1 cut(s) 107
PpuMI RGGWCCY 2 cut(s) 857, 1420
PsiI TTATAA 1 cut(s) 1073
Psp5II RGGWCCY 2 cut(s) 857, 1420
Psp6I CCWGG 6 cut(s) 133, 1213, 1364, 1416, 1423, 1492
PspGI CCWGG 6 cut(s) 133, 1213, 1364, 1416, 1423, 1492
PspN4I GGNNCC 4 cut(s) 653, 964, 1097, 1422
PspPI GGNCC 3 cut(s) 652, 857, 1420
PspPPI RGGWCCY 2 cut(s) 857, 1420
PsrI GAACNNNNNNTAC 2 cut(s) 719, 751
PsuI RGATCY 3 cut(s) 466, 962, 1360
RsaI GTAC 4 cut(s) 199, 1320, 1471, 1564
RsaNI GTAC 4 cut(s) 198, 1319, 1470, 1563
SacII CCGCGG 1 cut(s) 1506
SaqAI TTAA 7 cut(s) 347, 381, 450, 495, 924, 948, 1461
SatI GCNGC 3 cut(s) 33, 220, 1191
Sau3AI GATC 7 cut(s) 261, 268, 466, 486, 694, 962, 1360
Sau96I GGNCC 3 cut(s) 652, 857, 1420
SchI GAGTC 1 cut(s) 108
ScrFI CCNGG 6 cut(s) 135, 1215, 1366, 1418, 1425, 1494
SduI GDGCHC 3 cut(s) 286, 770, 1393
SfaNI GCATC 3 cut(s) 691, 835, 900
Sfr274I CTCGAG 1 cut(s) 631
Sfr303I CCGCGG 1 cut(s) 1506
SgrBI CCGCGG 1 cut(s) 1506
SinI GGWCC 3 cut(s) 652, 857, 1420
SlaI CTCGAG 1 cut(s) 631
SmlI CTYRAG 3 cut(s) 346, 494, 631
SmoI CTYRAG 3 cut(s) 346, 494, 631
SsiI CCGC 4 cut(s) 30, 1444, 1503, 1505
SspI AATATT 1 cut(s) 1229
SspMI CTAG 4 cut(s) 125, 290, 1053, 1398
StyD4I CCNGG 6 cut(s) 133, 1213, 1364, 1416, 1423, 1492
StyI CCWWGG 1 cut(s) 818
TaaI ACNGT 5 cut(s) 971, 1031, 1061, 1208, 1516
TaiI ACGT 2 cut(s) 156, 841
TaqI TCGA 2 cut(s) 510, 632
TatI WGTACW 1 cut(s) 1318
TfiI GAWTC 4 cut(s) 313, 332, 455, 604
Tru1I TTAA 7 cut(s) 347, 381, 450, 495, 924, 948, 1461
Tru9I TTAA 7 cut(s) 347, 381, 450, 495, 924, 948, 1461
TscAI CASTG 3 cut(s) 264, 271, 1066
TseFI GTSAC 5 cut(s) 562, 1048, 1135, 1253, 1487
TseI GCWGC 3 cut(s) 32, 219, 1190
Tsp45I GTSAC 5 cut(s) 562, 1048, 1135, 1253, 1487
TspDTI ATGAA 8 cut(s) 17, 23, 155, 204, 305, 345, 617, 1182
TspGWI ACGGA 2 cut(s) 459, 581
TspRI CASTG 3 cut(s) 264, 271, 1066
Van91I CCANNNNNTGG 2 cut(s) 587, 1371
Vha464I CTTAAG 2 cut(s) 346, 494
VneI GTGCAC 1 cut(s) 1389
VpaK11BI GGWCC 3 cut(s) 652, 857, 1420
XagI CCTNNNNNAGG 1 cut(s) 291
XapI RAATTY 7 cut(s) 505, 574, 658, 760, 920, 1293, 1523
XhoI CTCGAG 1 cut(s) 631
XspI CTAG 4 cut(s) 125, 290, 1053, 1398
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.