BEST Arabidopsis thaliana protein match is
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_5g32760 |
| malus_domestica | MD15G1400500.v1.1 |
| prunus_persica | Prupe.1G548100_v2.0.a1 |
| pyrus_communis | pycom15g35910 |
| rosa_chinensis | RchiOBHm_Chr7g0230431 RchiOBHm_Chr7g0230451 |
| rosa_laevigata | RLG00000001493 RLG00000001495 |
| rosa_multiflora | Rmu_sc0002541.1_g000025 Rmu_sc0002541.1_g000027 Rmu_sc0007103.1_g000011 Rmu_sc0007103.1_g000013 |
| rosa_roxburghii | Rroxscaffold_3G00230150 Rroxscaffold_3G00230160 |
| rosa_rugosa | Rorug07G0260500 |
| rosa_samantha | Rh7AG411100 Rh7AG411600 Rh7AG411800 Rh7BG389700 Rh7CG429200 Rh7CG429300 Rh7DG407700 Rh7DG407900 |
| rosa_wichuraiana | Rw7G034120 Rw7G034140 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1073 |
| AccB1I | GGYRCC | 1 cut(s) | 1095 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 587, 1371 |
| AccII | CGCG | 2 cut(s) | 282, 1505 |
| AciI | CCGC | 4 cut(s) | 30, 1444, 1503, 1505 |
| AclWI | GGATC | 4 cut(s) | 263, 957, 970, 1355 |
| AcoI | YGGCCR | 2 cut(s) | 231, 883 |
| AcsI | RAATTY | 7 cut(s) | 505, 574, 658, 760, 920, 1293, 1523 |
| AcuI | CTGAAG | 2 cut(s) | 222, 1563 |
| AfaI | GTAC | 4 cut(s) | 199, 1320, 1471, 1558 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 215, 229, 539, 587, 777, 866, 1028, 1371, 1509 |
| AflII | CTTAAG | 2 cut(s) | 346, 494 |
| AgsI | TTSAA | 1 cut(s) | 666 |
| AjnI | CCWGG | 6 cut(s) | 133, 1213, 1364, 1416, 1423, 1492 |
| AluBI | AGCT | 6 cut(s) | 122, 173, 206, 424, 999, 1378 |
| AluI | AGCT | 6 cut(s) | 122, 173, 206, 424, 999, 1378 |
| Alw21I | GWGCWC | 2 cut(s) | 770, 1393 |
| Alw26I | GTCTC | 7 cut(s) | 106, 123, 751, 916, 931, 1120, 1493 |
| Alw44I | GTGCAC | 1 cut(s) | 1389 |
| AlwI | GGATC | 4 cut(s) | 263, 957, 970, 1355 |
| Ama87I | CYCGRG | 1 cut(s) | 631 |
| AoxI | GGCC | 2 cut(s) | 231, 883 |
| ApaLI | GTGCAC | 1 cut(s) | 1389 |
| ApeKI | GCWGC | 3 cut(s) | 32, 219, 1190 |
| ApoI | RAATTY | 7 cut(s) | 505, 574, 658, 760, 920, 1293, 1523 |
| AspLEI | GCGC | 1 cut(s) | 284 |
| AspS9I | GGNCC | 3 cut(s) | 652, 857, 1420 |
| AsuHPI | GGTGA | 5 cut(s) | 85, 95, 368, 602, 1481 |
| AvaI | CYCGRG | 1 cut(s) | 631 |
| AvaII | GGWCC | 3 cut(s) | 652, 857, 1420 |
| BaeGI | GKGCMC | 1 cut(s) | 1393 |
| BamHI | GGATCC | 1 cut(s) | 962 |
| BanI | GGYRCC | 1 cut(s) | 1095 |
| BanII | GRGCYC | 1 cut(s) | 149 |
| BbsI | GAAGAC | 2 cut(s) | 11, 1446 |
| Bbv12I | GWGCWC | 2 cut(s) | 770, 1393 |
| BbvI | GCAGC | 3 cut(s) | 44, 231, 1177 |
| BccI | CCATC | 3 cut(s) | 875, 1340, 1344 |
| BceAI | ACGGC | 1 cut(s) | 870 |
| BciT130I | CCWGG | 6 cut(s) | 135, 1215, 1366, 1418, 1425, 1494 |
| BciVI | GTATCC | 1 cut(s) | 825 |
| BclI | TGATCA | 1 cut(s) | 486 |
| BcoDI | GTCTC | 7 cut(s) | 106, 123, 751, 916, 931, 1120, 1493 |
| BfaI | CTAG | 2 cut(s) | 125, 1053 |
| BfrI | CTTAAG | 2 cut(s) | 346, 494 |
| BfuI | GTATCC | 1 cut(s) | 825 |
| BglII | AGATCT | 1 cut(s) | 466 |
| BisI | GCNGC | 3 cut(s) | 33, 220, 1191 |
| BlsI | GCNGC | 3 cut(s) | 34, 221, 1192 |
| Bme1390I | CCNGG | 6 cut(s) | 135, 1215, 1366, 1418, 1425, 1494 |
| Bme18I | GGWCC | 3 cut(s) | 652, 857, 1420 |
| BmeT110I | CYCGRG | 1 cut(s) | 631 |
| BmgT120I | GGNCC | 3 cut(s) | 652, 857, 1420 |
| BmiI | GGNNCC | 4 cut(s) | 653, 964, 1097, 1422 |
| BmrFI | CCNGG | 6 cut(s) | 135, 1215, 1366, 1418, 1425, 1494 |
| BmsI | GCATC | 3 cut(s) | 691, 835, 900 |
| BpiI | GAAGAC | 2 cut(s) | 11, 1446 |
| BpmI | CTGGAG | 3 cut(s) | 693, 1381, 1515 |
| Bsa29I | ATCGAT | 1 cut(s) | 276 |
| BsaBI | GATNNNNATC | 1 cut(s) | 640 |
| BsaI | GGTCTC | 2 cut(s) | 123, 1493 |
| BsaJI | CCNNGG | 8 cut(s) | 133, 134, 818, 886, 1364, 1423, 1492, 1503 |
| BsaWI | WCCGGW | 1 cut(s) | 770 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 190, 220, 1100, 1130 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 215, 229, 539, 587, 777, 866, 1028, 1371, 1509 |
| Bse118I | RCCGGY | 1 cut(s) | 1401 |
| Bse1I | ACTGG | 5 cut(s) | 69, 234, 676, 1097, 1150 |
| Bse3DI | GCAATG | 1 cut(s) | 193 |
| Bse8I | GATNNNNATC | 1 cut(s) | 640 |
| BseBI | CCWGG | 6 cut(s) | 135, 1215, 1366, 1418, 1425, 1494 |
| BseCI | ATCGAT | 1 cut(s) | 276 |
| BseDI | CCNNGG | 8 cut(s) | 133, 134, 818, 886, 1364, 1423, 1492, 1503 |
| BseGI | GGATG | 3 cut(s) | 144, 489, 1355 |
| BseJI | GATNNNNATC | 1 cut(s) | 640 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 215, 229, 539, 587, 777, 866, 1028, 1371, 1509 |
| BseMI | GCAATG | 1 cut(s) | 193 |
| BseMII | CTCAG | 1 cut(s) | 117 |
| BseNI | ACTGG | 5 cut(s) | 69, 234, 676, 1097, 1150 |
| BseRI | GAGGAG | 1 cut(s) | 972 |
| BseSI | GKGCMC | 1 cut(s) | 1393 |
| BseXI | GCAGC | 3 cut(s) | 44, 231, 1177 |
| Bsh1236I | CGCG | 2 cut(s) | 282, 1505 |
| Bsh1285I | CGRYCG | 1 cut(s) | 280 |
| BshFI | GGCC | 2 cut(s) | 233, 885 |
| BshNI | GGYRCC | 1 cut(s) | 1095 |
| BshVI | ATCGAT | 1 cut(s) | 276 |
| BsiEI | CGRYCG | 1 cut(s) | 280 |
| BsiHKAI | GWGCWC | 2 cut(s) | 770, 1393 |
| BsiHKCI | CYCGRG | 1 cut(s) | 631 |
| BsiSI | CCGG | 2 cut(s) | 771, 1402 |
| BslFI | GGGAC | 1 cut(s) | 665 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 215, 229, 539, 587, 777, 866, 1028, 1371, 1509 |
| BsmAI | GTCTC | 7 cut(s) | 106, 123, 751, 916, 931, 1120, 1493 |
| BsmFI | GGGAC | 1 cut(s) | 665 |
| BsnI | GGCC | 2 cut(s) | 233, 885 |
| Bso31I | GGTCTC | 2 cut(s) | 123, 1493 |
| BsoBI | CYCGRG | 1 cut(s) | 631 |
| Bsp1286I | GDGCHC | 3 cut(s) | 149, 770, 1393 |
| Bsp1407I | TGTACA | 1 cut(s) | 1318 |
| Bsp143I | GATC | 7 cut(s) | 268, 277, 466, 486, 694, 962, 1360 |
| BspACI | CCGC | 4 cut(s) | 30, 1444, 1503, 1505 |
| BspANI | GGCC | 2 cut(s) | 233, 885 |
| BspCNI | CTCAG | 1 cut(s) | 116 |
| BspDI | ATCGAT | 1 cut(s) | 276 |
| BspFNI | CGCG | 2 cut(s) | 282, 1505 |
| BspHI | TCATGA | 1 cut(s) | 894 |
| BspLI | GGNNCC | 4 cut(s) | 653, 964, 1097, 1422 |
| BspPI | GGATC | 4 cut(s) | 263, 957, 970, 1355 |
| BspQI | GCTCTTC | 1 cut(s) | 137 |
| BspT107I | GGYRCC | 1 cut(s) | 1095 |
| BspTI | CTTAAG | 2 cut(s) | 346, 494 |
| BspTNI | GGTCTC | 2 cut(s) | 123, 1493 |
| BsrDI | GCAATG | 1 cut(s) | 193 |
| BsrFI | RCCGGY | 1 cut(s) | 1401 |
| BsrGI | TGTACA | 1 cut(s) | 1318 |
| BsrI | ACTGG | 5 cut(s) | 69, 234, 676, 1097, 1150 |
| BssAI | RCCGGY | 1 cut(s) | 1401 |
| BssECI | CCNNGG | 8 cut(s) | 133, 134, 818, 886, 1364, 1423, 1492, 1503 |
| BssMI | GATC | 7 cut(s) | 268, 277, 466, 486, 694, 962, 1360 |
| BssT1I | CCWWGG | 1 cut(s) | 818 |
| Bst2UI | CCWGG | 6 cut(s) | 135, 1215, 1366, 1418, 1425, 1494 |
| Bst4CI | ACNGT | 5 cut(s) | 971, 1031, 1061, 1208, 1516 |
| Bst6I | CTCTTC | 1 cut(s) | 137 |
| BstAFI | CTTAAG | 2 cut(s) | 346, 494 |
| BstAUI | TGTACA | 1 cut(s) | 1318 |
| BstC8I | GCNNGC | 1 cut(s) | 545 |
| BstDEI | CTNAG | 2 cut(s) | 103, 1534 |
| BstDSI | CCRYGG | 2 cut(s) | 886, 1503 |
| BstF5I | GGATG | 3 cut(s) | 144, 489, 1355 |
| BstFNI | CGCG | 2 cut(s) | 282, 1505 |
| BstHHI | GCGC | 1 cut(s) | 284 |
| BstKTI | GATC | 7 cut(s) | 271, 280, 469, 489, 697, 965, 1363 |
| BstMAI | GTCTC | 7 cut(s) | 106, 123, 751, 916, 931, 1120, 1493 |
| BstMBI | GATC | 7 cut(s) | 268, 277, 466, 486, 694, 962, 1360 |
| BstMCI | CGRYCG | 1 cut(s) | 280 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 170, 239 |
| BstNI | CCWGG | 6 cut(s) | 135, 1215, 1366, 1418, 1425, 1494 |
| BstSCI | CCNGG | 6 cut(s) | 133, 1213, 1364, 1416, 1423, 1492 |
| BstSLI | GKGCMC | 1 cut(s) | 1393 |
| BstUI | CGCG | 2 cut(s) | 282, 1505 |
| BstV1I | GCAGC | 3 cut(s) | 44, 231, 1177 |
| BstV2I | GAAGAC | 2 cut(s) | 11, 1446 |
| BstX2I | RGATCY | 3 cut(s) | 466, 962, 1360 |
| BstYI | RGATCY | 3 cut(s) | 466, 962, 1360 |
| Bsu15I | ATCGAT | 1 cut(s) | 276 |
| BsuI | GTATCC | 1 cut(s) | 825 |
| BsuRI | GGCC | 2 cut(s) | 233, 885 |
| BsuTUI | ATCGAT | 1 cut(s) | 276 |
| BtgI | CCRYGG | 2 cut(s) | 886, 1503 |
| BtsCI | GGATG | 3 cut(s) | 144, 489, 1355 |
| BtsIMutI | CAGTG | 2 cut(s) | 264, 1066 |
| Cac8I | GCNNGC | 1 cut(s) | 545 |
| CciI | TCATGA | 1 cut(s) | 894 |
| CfoI | GCGC | 1 cut(s) | 284 |
| Cfr10I | RCCGGY | 1 cut(s) | 1401 |
| Cfr13I | GGNCC | 3 cut(s) | 652, 857, 1420 |
| Cfr42I | CCGCGG | 1 cut(s) | 1506 |
| ClaI | ATCGAT | 1 cut(s) | 276 |
| Csp6I | GTAC | 4 cut(s) | 198, 1319, 1470, 1557 |
| CviAII | CATG | 9 cut(s) | 214, 490, 582, 750, 895, 1023, 1133, 1322, 1371 |
| CviQI | GTAC | 4 cut(s) | 198, 1319, 1470, 1557 |
| DdeI | CTNAG | 2 cut(s) | 103, 1534 |
| DpnI | GATC | 7 cut(s) | 270, 279, 468, 488, 696, 964, 1362 |
| DpnII | GATC | 7 cut(s) | 268, 277, 466, 486, 694, 962, 1360 |
| DraI | TTTAAA | 1 cut(s) | 925 |
| EaeI | YGGCCR | 2 cut(s) | 231, 883 |
| Eam1104I | CTCTTC | 1 cut(s) | 137 |
| EarI | CTCTTC | 1 cut(s) | 137 |
| Eco130I | CCWWGG | 1 cut(s) | 818 |
| Eco24I | GRGCYC | 1 cut(s) | 149 |
| Eco31I | GGTCTC | 2 cut(s) | 123, 1493 |
| Eco47I | GGWCC | 3 cut(s) | 652, 857, 1420 |
| Eco57I | CTGAAG | 2 cut(s) | 222, 1563 |
| Eco88I | CYCGRG | 1 cut(s) | 631 |
| EcoO109I | RGGNCCY | 2 cut(s) | 857, 1420 |
| EcoRII | CCWGG | 6 cut(s) | 133, 1213, 1364, 1416, 1423, 1492 |
| EcoT14I | CCWWGG | 1 cut(s) | 818 |
| EcoT38I | GRGCYC | 1 cut(s) | 149 |
| ErhI | CCWWGG | 1 cut(s) | 818 |
| FaeI | CATG | 9 cut(s) | 217, 493, 585, 753, 898, 1026, 1136, 1325, 1374 |
| FaqI | GGGAC | 1 cut(s) | 665 |
| FatI | CATG | 9 cut(s) | 213, 489, 581, 749, 894, 1022, 1132, 1321, 1370 |
| FauI | CCCGC | 1 cut(s) | 1437 |
| FauNDI | CATATG | 1 cut(s) | 1186 |
| FbaI | TGATCA | 1 cut(s) | 486 |
| Fnu4HI | GCNGC | 3 cut(s) | 33, 220, 1191 |
| FokI | GGATG | 3 cut(s) | 151, 496, 1362 |
| FriOI | GRGCYC | 1 cut(s) | 149 |
| Fsp4HI | GCNGC | 3 cut(s) | 33, 220, 1191 |
| FspBI | CTAG | 2 cut(s) | 125, 1053 |
| GlaI | GCGC | 1 cut(s) | 283 |
| GluI | GCNGC | 3 cut(s) | 33, 220, 1191 |
| GsuI | CTGGAG | 3 cut(s) | 693, 1381, 1515 |
| HaeIII | GGCC | 2 cut(s) | 233, 885 |
| HapII | CCGG | 2 cut(s) | 771, 1402 |
| HhaI | GCGC | 1 cut(s) | 284 |
| Hin1II | CATG | 9 cut(s) | 217, 493, 585, 753, 898, 1026, 1136, 1325, 1374 |
| Hin6I | GCGC | 1 cut(s) | 282 |
| HinP1I | GCGC | 1 cut(s) | 282 |
| HincII | GTYRAC | 1 cut(s) | 62 |
| HindII | GTYRAC | 1 cut(s) | 62 |
| HindIII | AAGCTT | 1 cut(s) | 171 |
| HinfI | GANTC | 6 cut(s) | 99, 294, 313, 332, 455, 604 |
| HpaII | CCGG | 2 cut(s) | 771, 1402 |
| HphI | GGTGA | 5 cut(s) | 85, 95, 368, 602, 1481 |
| Hpy166II | GTNNAC | 3 cut(s) | 62, 619, 1391 |
| Hpy188I | TCNGA | 5 cut(s) | 106, 158, 337, 466, 844 |
| Hpy188III | TCNNGA | 7 cut(s) | 298, 533, 633, 698, 895, 1331, 1541 |
| Hpy8I | GTNNAC | 3 cut(s) | 62, 619, 1391 |
| Hpy99I | CGWCG | 1 cut(s) | 1031 |
| HpyAV | CCTTC | 3 cut(s) | 587, 848, 1538 |
| HpyCH4III | ACNGT | 5 cut(s) | 971, 1031, 1061, 1208, 1516 |
| HpyCH4IV | ACGT | 2 cut(s) | 153, 838 |
| HpyCH4V | TGCA | 8 cut(s) | 164, 186, 371, 410, 848, 1223, 1291, 1391 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 170, 239 |
| HpyF3I | CTNAG | 2 cut(s) | 103, 1534 |
| HpySE526I | ACGT | 2 cut(s) | 153, 838 |
| Hsp92II | CATG | 9 cut(s) | 217, 493, 585, 753, 898, 1026, 1136, 1325, 1374 |
| HspAI | GCGC | 1 cut(s) | 282 |
| Ksp22I | TGATCA | 1 cut(s) | 486 |
| KspI | CCGCGG | 1 cut(s) | 1506 |
| Kzo9I | GATC | 7 cut(s) | 268, 277, 466, 486, 694, 962, 1360 |
| LguI | GCTCTTC | 1 cut(s) | 137 |
| LmnI | GCTCC | 3 cut(s) | 211, 421, 1375 |
| Lsp1109I | GCAGC | 3 cut(s) | 44, 231, 1177 |
| LweI | GCATC | 3 cut(s) | 691, 835, 900 |
| MaeI | CTAG | 2 cut(s) | 125, 1053 |
| MaeII | ACGT | 2 cut(s) | 153, 838 |
| MaeIII | GTNAC | 5 cut(s) | 562, 1048, 1135, 1253, 1487 |
| MalI | GATC | 7 cut(s) | 270, 279, 468, 488, 696, 964, 1362 |
| MboI | GATC | 7 cut(s) | 268, 277, 466, 486, 694, 962, 1360 |
| MboII | GAAGA | 7 cut(s) | 11, 16, 154, 450, 1018, 1289, 1446 |
| MflI | RGATCY | 3 cut(s) | 466, 962, 1360 |
| MhlI | GDGCHC | 3 cut(s) | 149, 770, 1393 |
| MlyI | GAGTC | 2 cut(s) | 108, 303 |
| MmeI | TCCRAC | 4 cut(s) | 758, 983, 990, 1531 |
| MnlI | CCTC | 7 cut(s) | 100, 257, 439, 668, 950, 953, 1547 |
| MseI | TTAA | 7 cut(s) | 347, 381, 450, 495, 924, 948, 1461 |
| MslI | CAYNNNNRTG | 1 cut(s) | 879 |
| MspA1I | CMGCKG | 1 cut(s) | 1505 |
| MspCI | CTTAAG | 2 cut(s) | 346, 494 |
| MspI | CCGG | 2 cut(s) | 771, 1402 |
| MspR9I | CCNGG | 6 cut(s) | 135, 1215, 1366, 1418, 1425, 1494 |
| MvaI | CCWGG | 6 cut(s) | 135, 1215, 1366, 1418, 1425, 1494 |
| MvnI | CGCG | 2 cut(s) | 282, 1505 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 170, 239 |
| NdeI | CATATG | 1 cut(s) | 1186 |
| NdeII | GATC | 7 cut(s) | 268, 277, 466, 486, 694, 962, 1360 |
| NlaIII | CATG | 9 cut(s) | 217, 493, 585, 753, 898, 1026, 1136, 1325, 1374 |
| NlaIV | GGNNCC | 4 cut(s) | 653, 964, 1097, 1422 |
| NmuCI | GTSAC | 4 cut(s) | 1048, 1135, 1253, 1487 |
| PaeR7I | CTCGAG | 1 cut(s) | 631 |
| PagI | TCATGA | 1 cut(s) | 894 |
| PasI | CCCWGGG | 1 cut(s) | 134 |
| PciSI | GCTCTTC | 1 cut(s) | 137 |
| PfeI | GAWTC | 4 cut(s) | 313, 332, 455, 604 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 587, 1371 |
| PfoI | TCCNGGA | 1 cut(s) | 1213 |
| PkrI | GCNGC | 3 cut(s) | 34, 221, 1192 |
| Ple19I | CGATCG | 1 cut(s) | 280 |
| PleI | GAGTC | 2 cut(s) | 107, 302 |
| PpsI | GAGTC | 2 cut(s) | 107, 302 |
| PpuMI | RGGWCCY | 2 cut(s) | 857, 1420 |
| PsiI | TTATAA | 1 cut(s) | 1073 |
| Psp5II | RGGWCCY | 2 cut(s) | 857, 1420 |
| Psp6I | CCWGG | 6 cut(s) | 133, 1213, 1364, 1416, 1423, 1492 |
| PspGI | CCWGG | 6 cut(s) | 133, 1213, 1364, 1416, 1423, 1492 |
| PspN4I | GGNNCC | 4 cut(s) | 653, 964, 1097, 1422 |
| PspPI | GGNCC | 3 cut(s) | 652, 857, 1420 |
| PspPPI | RGGWCCY | 2 cut(s) | 857, 1420 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 719, 751 |
| PsuI | RGATCY | 3 cut(s) | 466, 962, 1360 |
| PvuI | CGATCG | 1 cut(s) | 280 |
| RsaI | GTAC | 4 cut(s) | 199, 1320, 1471, 1558 |
| RsaNI | GTAC | 4 cut(s) | 198, 1319, 1470, 1557 |
| RseI | CAYNNNNRTG | 1 cut(s) | 879 |
| SacII | CCGCGG | 1 cut(s) | 1506 |
| SapI | GCTCTTC | 1 cut(s) | 137 |
| SaqAI | TTAA | 7 cut(s) | 347, 381, 450, 495, 924, 948, 1461 |
| SatI | GCNGC | 3 cut(s) | 33, 220, 1191 |
| Sau3AI | GATC | 7 cut(s) | 268, 277, 466, 486, 694, 962, 1360 |
| Sau96I | GGNCC | 3 cut(s) | 652, 857, 1420 |
| SchI | GAGTC | 2 cut(s) | 108, 303 |
| ScrFI | CCNGG | 6 cut(s) | 135, 1215, 1366, 1418, 1425, 1494 |
| SduI | GDGCHC | 3 cut(s) | 149, 770, 1393 |
| SfaNI | GCATC | 3 cut(s) | 691, 835, 900 |
| Sfr274I | CTCGAG | 1 cut(s) | 631 |
| Sfr303I | CCGCGG | 1 cut(s) | 1506 |
| SgrBI | CCGCGG | 1 cut(s) | 1506 |
| SinI | GGWCC | 3 cut(s) | 652, 857, 1420 |
| SlaI | CTCGAG | 1 cut(s) | 631 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 879 |
| SmlI | CTYRAG | 3 cut(s) | 346, 494, 631 |
| SmoI | CTYRAG | 3 cut(s) | 346, 494, 631 |
| SsiI | CCGC | 4 cut(s) | 30, 1444, 1503, 1505 |
| SspI | AATATT | 1 cut(s) | 1229 |
| SspMI | CTAG | 2 cut(s) | 125, 1053 |
| StyD4I | CCNGG | 6 cut(s) | 133, 1213, 1364, 1416, 1423, 1492 |
| StyI | CCWWGG | 1 cut(s) | 818 |
| TaaI | ACNGT | 5 cut(s) | 971, 1031, 1061, 1208, 1516 |
| TaiI | ACGT | 2 cut(s) | 156, 841 |
| TaqI | TCGA | 3 cut(s) | 276, 510, 632 |
| TatI | WGTACW | 1 cut(s) | 1318 |
| TfiI | GAWTC | 4 cut(s) | 313, 332, 455, 604 |
| Tru1I | TTAA | 7 cut(s) | 347, 381, 450, 495, 924, 948, 1461 |
| Tru9I | TTAA | 7 cut(s) | 347, 381, 450, 495, 924, 948, 1461 |
| TscAI | CASTG | 2 cut(s) | 271, 1066 |
| TseFI | GTSAC | 4 cut(s) | 1048, 1135, 1253, 1487 |
| TseI | GCWGC | 3 cut(s) | 32, 219, 1190 |
| Tsp45I | GTSAC | 4 cut(s) | 1048, 1135, 1253, 1487 |
| TspGWI | ACGGA | 2 cut(s) | 581, 699 |
| TspRI | CASTG | 2 cut(s) | 271, 1066 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 587, 1371 |
| Vha464I | CTTAAG | 2 cut(s) | 346, 494 |
| VneI | GTGCAC | 1 cut(s) | 1389 |
| VpaK11BI | GGWCC | 3 cut(s) | 652, 857, 1420 |
| XapI | RAATTY | 7 cut(s) | 505, 574, 658, 760, 920, 1293, 1523 |
| XhoI | CTCGAG | 1 cut(s) | 631 |
| XspI | CTAG | 2 cut(s) | 125, 1053 |