RLG00000001495

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0007514
Physical Location & Seq
Forward (+)
16369405 .. 16371999
2595 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001495

Sequence Viewer

Length: 1584 bp
ATGAAGATAAAGATGAAAATGGGTCTTCTCAATTCAGCAGTCTGTGTTGTTTTGGTTGTTGTTAGTCAACTGGTTGTGGTGAGTTTAGGTGATTATATAAGCAGAGTCTCAGAGGCTTACTTATCAGCTCTAGGAGACCCAGGGATGAAGAACCCGAATGTTAGAGTTGCATTGGAAGCTTGGAACTTCTGCAATGAAGTTGGTACTGAAGCTCCCAACATGGGCAGCCCCAGACTGGCCGATTGTGCCGATATCTCTTGCTCACTAATCACTGATCCTATTGATCGCGCTCCTCTAGGAGTCAAGAGTGATTGTGTGATTCATCACAGAGTAAATGAATCAGACAACAACTTAAGGGCTGGTGATAAGTTTCCTGTAAGCGATTTTAAGCCATACACAAACCCTGACTTGTATGCAACCGAAAAGGAGCTGTATCTTGCTTCTCTATGTGAGGTTAATGATTCTTCATCAGATCCGTGGCAGTTTTGGATGATCATGCTTAAGAATGGGAATTTCGACAAGAACACTACTCTTTGTCCTGAAAATGGCAAGCCTGTAAGCAGAATTGTAACGGATAGGAATTTTCCATGTTTTGGTGAAGGTTGTATGAATCAGCCACTTGTTTACCATAACTACTCGAGATTAGTATCTTATGGGGACCAGAATTTGTCAATAACTGGAGGATTTTACGGAAGTTATGATCTTGATGCCGACTTGGGAAAAGGTATAGGGAACAACTCCTATTTTTCAGCCTCATGGCAGAAAAATTTGAGCACCGGAAGTTGGATCTTCTCGCACAGATTGACAACATCTGCCAAGTATCCTTGGCTAATGTTGTATCTACGTTCAGATGCAACAGAAGGACCTAATGGTGGTTATCACTATGATGGCCGTGGCATCATGAGAAAGTTGCCTGTCTCCCCAAAATTTAAAGTCAGATTGAGACTTGATGTTAAGCAAGGAGGAGGATCCAACAGTCAATTTTATCTCCTTGATATAGGAAGCTGTTGGAAGAACAATGGAAAACCATGCAACGGTAATGTTTTGACAGATGTGACTAGATACAGTGAAATGATTATAAACCCAGCAACTACAAACTGGTGCCGACCAGATAACCTTGTCTCCTGCCCACCTTACCATGTCACTCAAACTGGTAATAGGATATATAGAAATGAAACATCTCGGTTTCCATATGCTGCTTATCATCTCTACTGTGCTCCTGGAAATGCAAAATATTTGGAGAAACCATATGATATATGTGACCCATATAGCAACCCACAAGCACAAGAATTGGTGCAAATTCTTCCCCACCCTGAATGGTCTGTACATGGCTATCCTGAAAAGAAAGGAGATGGATGGATTGGAGATACCAGGACATGGGAGCTTGATGTTGGTGCACTCTCTAGCCGGTTGTATTTCTACCAGGACCCGGGAACAGAACCAGCAAAGCGGGTATGGTCTTCACTTAATGTGGGTACAGAAATATATGTCAGTCAACCAGGAGAGACTGCGGAATGGACTGTAAGTGAATTTGATGTATTAGTTCCTGAAGGTGTTGGAGATAATGGTACCATGCCTTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

528

Amino Acids

58.83

Weight (kDa)

5.58

Isoelectric Point (pI)

32.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7705 PF24804 42 - 515 1.2e-251 Domain of unknown function (DUF7705)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1079
Acc65I GGTACC 1 cut(s) 1568
AccB1I GGYRCC 2 cut(s) 1101, 1568
AccB7I CCANNNNNTGG 2 cut(s) 593, 1377
AccII CGCG 1 cut(s) 288
AciI CCGC 2 cut(s) 1450, 1511
AclWI GGATC 5 cut(s) 269, 467, 794, 963, 976
AcoI YGGCCR 2 cut(s) 237, 889
AcsI RAATTY 7 cut(s) 511, 580, 664, 766, 926, 1299, 1529
AcuI CTGAAG 2 cut(s) 228, 1569
AfaI GTAC 4 cut(s) 205, 1326, 1477, 1570
AfiI CCNNNNNNNGG 9 cut(s) 221, 235, 545, 593, 783, 872, 1034, 1377, 1429
AflII CTTAAG 2 cut(s) 352, 500
AjnI CCWGG 5 cut(s) 139, 1219, 1370, 1422, 1498
AluBI AGCT 6 cut(s) 128, 179, 212, 430, 1005, 1384
AluI AGCT 6 cut(s) 128, 179, 212, 430, 1005, 1384
Alw21I GWGCWC 3 cut(s) 776, 1219, 1399
Alw26I GTCTC 6 cut(s) 112, 129, 922, 937, 1126, 1499
Alw44I GTGCAC 1 cut(s) 1395
AlwI GGATC 5 cut(s) 269, 467, 794, 963, 976
Ama87I CYCGRG 2 cut(s) 637, 1429
AoxI GGCC 2 cut(s) 237, 889
ApaLI GTGCAC 1 cut(s) 1395
ApeKI GCWGC 2 cut(s) 225, 1196
ApoI RAATTY 7 cut(s) 511, 580, 664, 766, 926, 1299, 1529
Asp718I GGTACC 1 cut(s) 1568
AspLEI GCGC 1 cut(s) 290
AspS9I GGNCC 3 cut(s) 658, 863, 1426
AsuC2I CCSGG 2 cut(s) 1430, 1431
AsuHPI GGTGA 4 cut(s) 91, 101, 374, 608
AvaI CYCGRG 2 cut(s) 637, 1429
AvaII GGWCC 3 cut(s) 658, 863, 1426
BaeGI GKGCMC 1 cut(s) 1399
BamHI GGATCC 1 cut(s) 968
BanI GGYRCC 2 cut(s) 1101, 1568
BbsI GAAGAC 2 cut(s) 17, 1452
Bbv12I GWGCWC 3 cut(s) 776, 1219, 1399
BbvI GCAGC 2 cut(s) 237, 1183
BccI CCATC 3 cut(s) 881, 1346, 1350
BceAI ACGGC 1 cut(s) 876
BciT130I CCWGG 5 cut(s) 141, 1221, 1372, 1424, 1500
BciVI GTATCC 1 cut(s) 831
BclI TGATCA 1 cut(s) 492
BcnI CCSGG 2 cut(s) 1430, 1431
BcoDI GTCTC 6 cut(s) 112, 129, 922, 937, 1126, 1499
BfaI CTAG 4 cut(s) 131, 296, 1059, 1404
BfrI CTTAAG 2 cut(s) 352, 500
BfuI GTATCC 1 cut(s) 831
BisI GCNGC 2 cut(s) 226, 1197
BlsI GCNGC 2 cut(s) 227, 1198
Bme1390I CCNGG 7 cut(s) 141, 1221, 1372, 1424, 1430, 1431, 1500
Bme18I GGWCC 3 cut(s) 658, 863, 1426
BmeT110I CYCGRG 2 cut(s) 637, 1429
BmgT120I GGNCC 3 cut(s) 658, 863, 1426
BmiI GGNNCC 5 cut(s) 659, 970, 1103, 1428, 1570
BmrFI CCNGG 7 cut(s) 141, 1221, 1372, 1424, 1430, 1431, 1500
BmsI GCATC 3 cut(s) 697, 841, 906
BpiI GAAGAC 2 cut(s) 17, 1452
BpmI CTGGAG 1 cut(s) 699
BpuMI CCSGG 2 cut(s) 1430, 1431
BsaBI GATNNNNATC 1 cut(s) 646
BsaI GGTCTC 1 cut(s) 129
BsaJI CCNNGG 6 cut(s) 139, 140, 476, 824, 892, 1429
BsaWI WCCGGW 1 cut(s) 776
BsaXI ACNNNNNCTCC 4 cut(s) 196, 226, 1106, 1136
Bsc4I CCNNNNNNNGG 9 cut(s) 221, 235, 545, 593, 783, 872, 1034, 1377, 1429
Bse118I RCCGGY 1 cut(s) 1407
Bse1I ACTGG 5 cut(s) 75, 240, 682, 1103, 1156
Bse3DI GCAATG 1 cut(s) 199
Bse8I GATNNNNATC 1 cut(s) 646
BseBI CCWGG 5 cut(s) 141, 1221, 1372, 1424, 1500
BseDI CCNNGG 6 cut(s) 139, 140, 476, 824, 892, 1429
BseGI GGATG 3 cut(s) 150, 495, 1361
BseJI GATNNNNATC 1 cut(s) 646
BseLI CCNNNNNNNGG 9 cut(s) 221, 235, 545, 593, 783, 872, 1034, 1377, 1429
BseMI GCAATG 1 cut(s) 199
BseMII CTCAG 1 cut(s) 123
BseNI ACTGG 5 cut(s) 75, 240, 682, 1103, 1156
BseRI GAGGAG 2 cut(s) 282, 978
BseSI GKGCMC 1 cut(s) 1399
BseXI GCAGC 2 cut(s) 237, 1183
BseYI CCCAGC 1 cut(s) 1084
Bsh1236I CGCG 1 cut(s) 288
BshFI GGCC 2 cut(s) 239, 891
BshNI GGYRCC 2 cut(s) 1101, 1568
BsiHKAI GWGCWC 3 cut(s) 776, 1219, 1399
BsiHKCI CYCGRG 2 cut(s) 637, 1429
BsiSI CCGG 3 cut(s) 777, 1408, 1430
BslFI GGGAC 1 cut(s) 671
BslI CCNNNNNNNGG 9 cut(s) 221, 235, 545, 593, 783, 872, 1034, 1377, 1429
BsmAI GTCTC 6 cut(s) 112, 129, 922, 937, 1126, 1499
BsmFI GGGAC 1 cut(s) 671
BsnI GGCC 2 cut(s) 239, 891
Bso31I GGTCTC 1 cut(s) 129
BsoBI CYCGRG 2 cut(s) 637, 1429
Bsp1286I GDGCHC 3 cut(s) 776, 1219, 1399
Bsp1407I TGTACA 1 cut(s) 1324
Bsp143I GATC 7 cut(s) 274, 283, 472, 492, 700, 786, 968
BspACI CCGC 2 cut(s) 1450, 1511
BspANI GGCC 2 cut(s) 239, 891
BspCNI CTCAG 1 cut(s) 122
BspFNI CGCG 1 cut(s) 288
BspHI TCATGA 1 cut(s) 900
BspLI GGNNCC 5 cut(s) 659, 970, 1103, 1428, 1570
BspPI GGATC 5 cut(s) 269, 467, 794, 963, 976
BspT107I GGYRCC 2 cut(s) 1101, 1568
BspTI CTTAAG 2 cut(s) 352, 500
BspTNI GGTCTC 1 cut(s) 129
BsrDI GCAATG 1 cut(s) 199
BsrFI RCCGGY 1 cut(s) 1407
BsrGI TGTACA 1 cut(s) 1324
BsrI ACTGG 5 cut(s) 75, 240, 682, 1103, 1156
BssAI RCCGGY 1 cut(s) 1407
BssECI CCNNGG 6 cut(s) 139, 140, 476, 824, 892, 1429
BssMI GATC 7 cut(s) 274, 283, 472, 492, 700, 786, 968
BssT1I CCWWGG 1 cut(s) 824
Bst2UI CCWGG 5 cut(s) 141, 1221, 1372, 1424, 1500
Bst4CI ACNGT 5 cut(s) 977, 1037, 1067, 1214, 1522
BstAFI CTTAAG 2 cut(s) 352, 500
BstAUI TGTACA 1 cut(s) 1324
BstC8I GCNNGC 1 cut(s) 551
BstDEI CTNAG 1 cut(s) 109
BstDSI CCRYGG 2 cut(s) 476, 892
BstF5I GGATG 3 cut(s) 150, 495, 1361
BstFNI CGCG 1 cut(s) 288
BstHHI GCGC 1 cut(s) 290
BstKTI GATC 7 cut(s) 277, 286, 475, 495, 703, 789, 971
BstMAI GTCTC 6 cut(s) 112, 129, 922, 937, 1126, 1499
BstMBI GATC 7 cut(s) 274, 283, 472, 492, 700, 786, 968
BstMWI GCNNNNNNNGC 2 cut(s) 176, 245
BstNI CCWGG 5 cut(s) 141, 1221, 1372, 1424, 1500
BstSCI CCNGG 7 cut(s) 139, 1219, 1370, 1422, 1428, 1429, 1498
BstSLI GKGCMC 1 cut(s) 1399
BstUI CGCG 1 cut(s) 288
BstV1I GCAGC 2 cut(s) 237, 1183
BstV2I GAAGAC 2 cut(s) 17, 1452
BstX2I RGATCY 3 cut(s) 472, 786, 968
BstYI RGATCY 3 cut(s) 472, 786, 968
BsuI GTATCC 1 cut(s) 831
BsuRI GGCC 2 cut(s) 239, 891
BtgI CCRYGG 2 cut(s) 476, 892
BtsCI GGATG 3 cut(s) 150, 495, 1361
BtsIMutI CAGTG 2 cut(s) 270, 1072
Cac8I GCNNGC 1 cut(s) 551
CciI TCATGA 1 cut(s) 900
CfoI GCGC 1 cut(s) 290
Cfr10I RCCGGY 1 cut(s) 1407
Cfr13I GGNCC 3 cut(s) 658, 863, 1426
Cfr9I CCCGGG 1 cut(s) 1429
Csp6I GTAC 4 cut(s) 204, 1325, 1476, 1569
CviQI GTAC 4 cut(s) 204, 1325, 1476, 1569
DdeI CTNAG 1 cut(s) 109
DpnI GATC 7 cut(s) 276, 285, 474, 494, 702, 788, 970
DpnII GATC 7 cut(s) 274, 283, 472, 492, 700, 786, 968
DraI TTTAAA 1 cut(s) 931
EaeI YGGCCR 2 cut(s) 237, 889
Eco130I CCWWGG 1 cut(s) 824
Eco31I GGTCTC 1 cut(s) 129
Eco32I GATATC 1 cut(s) 253
Eco47I GGWCC 3 cut(s) 658, 863, 1426
Eco57I CTGAAG 2 cut(s) 228, 1569
Eco88I CYCGRG 2 cut(s) 637, 1429
EcoO109I RGGNCCY 2 cut(s) 863, 1426
EcoRII CCWGG 5 cut(s) 139, 1219, 1370, 1422, 1498
EcoRV GATATC 1 cut(s) 253
EcoT14I CCWWGG 1 cut(s) 824
ErhI CCWWGG 1 cut(s) 824
FaqI GGGAC 1 cut(s) 671
FauI CCCGC 1 cut(s) 1443
FauNDI CATATG 2 cut(s) 1192, 1249
FbaI TGATCA 1 cut(s) 492
Fnu4HI GCNGC 2 cut(s) 226, 1197
FokI GGATG 3 cut(s) 157, 502, 1368
Fsp4HI GCNGC 2 cut(s) 226, 1197
FspBI CTAG 4 cut(s) 131, 296, 1059, 1404
GlaI GCGC 1 cut(s) 289
GluI GCNGC 2 cut(s) 226, 1197
GsaI CCCAGC 1 cut(s) 1088
GsuI CTGGAG 1 cut(s) 699
HaeIII GGCC 2 cut(s) 239, 891
HapII CCGG 3 cut(s) 777, 1408, 1430
HhaI GCGC 1 cut(s) 290
Hin6I GCGC 1 cut(s) 288
HinP1I GCGC 1 cut(s) 288
HincII GTYRAC 2 cut(s) 68, 1496
HindII GTYRAC 2 cut(s) 68, 1496
HindIII AAGCTT 1 cut(s) 177
HinfI GANTC 6 cut(s) 105, 300, 319, 338, 461, 610
HpaII CCGG 3 cut(s) 777, 1408, 1430
HphI GGTGA 4 cut(s) 91, 101, 374, 608
Hpy166II GTNNAC 4 cut(s) 68, 625, 1397, 1496
Hpy188I TCNGA 5 cut(s) 112, 343, 472, 850, 938
Hpy188III TCNNGA 7 cut(s) 304, 539, 639, 704, 901, 1337, 1547
Hpy8I GTNNAC 4 cut(s) 68, 625, 1397, 1496
HpyAV CCTTC 3 cut(s) 593, 854, 1544
HpyCH4III ACNGT 5 cut(s) 977, 1037, 1067, 1214, 1522
HpyCH4IV ACGT 1 cut(s) 844
HpyCH4V TGCA 8 cut(s) 170, 192, 416, 854, 1032, 1229, 1297, 1397
HpyF10VI GCNNNNNNNGC 2 cut(s) 176, 245
HpyF3I CTNAG 1 cut(s) 109
HpySE526I ACGT 1 cut(s) 844
HspAI GCGC 1 cut(s) 288
KpnI GGTACC 1 cut(s) 1572
Ksp22I TGATCA 1 cut(s) 492
Kzo9I GATC 7 cut(s) 274, 283, 472, 492, 700, 786, 968
LmnI GCTCC 5 cut(s) 217, 295, 427, 1222, 1381
Lsp1109I GCAGC 2 cut(s) 237, 1183
LweI GCATC 3 cut(s) 697, 841, 906
MaeI CTAG 4 cut(s) 131, 296, 1059, 1404
MaeII ACGT 1 cut(s) 844
MaeIII GTNAC 4 cut(s) 568, 1054, 1141, 1259
MalI GATC 7 cut(s) 276, 285, 474, 494, 702, 788, 970
MboI GATC 7 cut(s) 274, 283, 472, 492, 700, 786, 968
MboII GAAGA 8 cut(s) 16, 17, 160, 456, 781, 1024, 1295, 1452
MflI RGATCY 3 cut(s) 472, 786, 968
MhlI GDGCHC 3 cut(s) 776, 1219, 1399
MlyI GAGTC 2 cut(s) 114, 309
MmeI TCCRAC 4 cut(s) 764, 989, 996, 1537
MnlI CCTC 7 cut(s) 106, 303, 445, 674, 763, 956, 959
MseI TTAA 7 cut(s) 353, 387, 456, 501, 930, 954, 1467
MslI CAYNNNNRTG 1 cut(s) 885
MspCI CTTAAG 2 cut(s) 352, 500
MspI CCGG 3 cut(s) 777, 1408, 1430
MspR9I CCNGG 7 cut(s) 141, 1221, 1372, 1424, 1430, 1431, 1500
MvaI CCWGG 5 cut(s) 141, 1221, 1372, 1424, 1500
MvnI CGCG 1 cut(s) 288
MwoI GCNNNNNNNGC 2 cut(s) 176, 245
NciI CCSGG 2 cut(s) 1430, 1431
NdeI CATATG 2 cut(s) 1192, 1249
NdeII GATC 7 cut(s) 274, 283, 472, 492, 700, 786, 968
NlaIV GGNNCC 5 cut(s) 659, 970, 1103, 1428, 1570
NmuCI GTSAC 3 cut(s) 1054, 1141, 1259
PaeR7I CTCGAG 1 cut(s) 637
PagI TCATGA 1 cut(s) 900
PasI CCCWGGG 1 cut(s) 140
PfeI GAWTC 4 cut(s) 319, 338, 461, 610
PflMI CCANNNNNTGG 2 cut(s) 593, 1377
PfoI TCCNGGA 1 cut(s) 1219
PkrI GCNGC 2 cut(s) 227, 1198
PleI GAGTC 2 cut(s) 113, 308
PpsI GAGTC 2 cut(s) 113, 308
PpuMI RGGWCCY 2 cut(s) 863, 1426
PsiI TTATAA 1 cut(s) 1079
Psp5II RGGWCCY 2 cut(s) 863, 1426
Psp6I CCWGG 5 cut(s) 139, 1219, 1370, 1422, 1498
PspFI CCCAGC 1 cut(s) 1084
PspGI CCWGG 5 cut(s) 139, 1219, 1370, 1422, 1498
PspN4I GGNNCC 5 cut(s) 659, 970, 1103, 1428, 1570
PspPI GGNCC 3 cut(s) 658, 863, 1426
PspPPI RGGWCCY 2 cut(s) 863, 1426
PsuI RGATCY 3 cut(s) 472, 786, 968
RsaI GTAC 4 cut(s) 205, 1326, 1477, 1570
RsaNI GTAC 4 cut(s) 204, 1325, 1476, 1569
RseI CAYNNNNRTG 1 cut(s) 885
SaqAI TTAA 7 cut(s) 353, 387, 456, 501, 930, 954, 1467
SatI GCNGC 2 cut(s) 226, 1197
Sau3AI GATC 7 cut(s) 274, 283, 472, 492, 700, 786, 968
Sau96I GGNCC 3 cut(s) 658, 863, 1426
SchI GAGTC 2 cut(s) 114, 309
ScrFI CCNGG 7 cut(s) 141, 1221, 1372, 1424, 1430, 1431, 1500
SduI GDGCHC 3 cut(s) 776, 1219, 1399
SfaNI GCATC 3 cut(s) 697, 841, 906
Sfr274I CTCGAG 1 cut(s) 637
SinI GGWCC 3 cut(s) 658, 863, 1426
SlaI CTCGAG 1 cut(s) 637
SmaI CCCGGG 1 cut(s) 1431
SmiMI CAYNNNNRTG 1 cut(s) 885
SmlI CTYRAG 3 cut(s) 352, 500, 637
SmoI CTYRAG 3 cut(s) 352, 500, 637
SsiI CCGC 2 cut(s) 1450, 1511
SspI AATATT 1 cut(s) 1235
SspMI CTAG 4 cut(s) 131, 296, 1059, 1404
StyD4I CCNGG 7 cut(s) 139, 1219, 1370, 1422, 1428, 1429, 1498
StyI CCWWGG 1 cut(s) 824
TaaI ACNGT 5 cut(s) 977, 1037, 1067, 1214, 1522
TaiI ACGT 1 cut(s) 847
TaqI TCGA 2 cut(s) 516, 638
TatI WGTACW 1 cut(s) 1324
TfiI GAWTC 4 cut(s) 319, 338, 461, 610
Tru1I TTAA 7 cut(s) 353, 387, 456, 501, 930, 954, 1467
Tru9I TTAA 7 cut(s) 353, 387, 456, 501, 930, 954, 1467
TscAI CASTG 2 cut(s) 277, 1072
TseFI GTSAC 3 cut(s) 1054, 1141, 1259
TseI GCWGC 2 cut(s) 225, 1196
Tsp45I GTSAC 3 cut(s) 1054, 1141, 1259
TspDTI ATGAA 9 cut(s) 17, 29, 161, 210, 311, 351, 456, 623, 1188
TspGWI ACGGA 3 cut(s) 465, 587, 705
TspMI CCCGGG 1 cut(s) 1429
TspRI CASTG 2 cut(s) 277, 1072
Van91I CCANNNNNTGG 2 cut(s) 593, 1377
Vha464I CTTAAG 2 cut(s) 352, 500
VneI GTGCAC 1 cut(s) 1395
VpaK11BI GGWCC 3 cut(s) 658, 863, 1426
XapI RAATTY 7 cut(s) 511, 580, 664, 766, 926, 1299, 1529
XhoI CTCGAG 1 cut(s) 637
XmaI CCCGGG 1 cut(s) 1429
XspI CTAG 4 cut(s) 131, 296, 1059, 1404
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.