Prupe.1G558200_v2.0.a1

Chaperone protein dnaJ 20, chloroplastic-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0016939
Physical Location & Seq
Forward (+)
45566440 .. 45567256
817 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G558200.1

Sequence Viewer

Length: 600 bp
ATGAACTTTTCGCTGACTTCAAGCCTAAACAGTGTAGCTCTACCTAAACCTTTTCTTTCTCACAGCCATAGACACGACCACCACCATGAACGCAAACCCACTATTAAGCTGTCTTTAATTACATGCAGATCAGCCACTAATTACGAGTCATCATTTACTTATAAGGTGAAGGATGGAGAAAATGAGAGCACCAATTTCTACAAGCTGCTTAGTCTAAATCCCAATATTAATACAAGCAAAGATGAGATAAAGAAAGCTTATAGAAGCATGGCTCTTCGATATCATCCAGACGTTTGCCATGATCCTTCCATTTCTTCCACCAAGGAATTTGTTCGACTGAATCAGGCTTACAAGACGCTATCGGATCCGGTGTTGCGCGAAGAATACGATTACGAATTGGGTTTGAAAATTTGTGTTGGTACTACTAGGGTTGGTTTCAAGATGGATAATATAAGAAACCATGGCGTTGGTGCAGCACAAAATAGATGGCGACAACAAGTTCTTGAGTTGAAGAGGAAGTCCAACTGCCGTATGGCACAGAAGGAAGGGTCGTGGGCAAGCAGAATGAGGAGGGCTCATAATATTTCTACCATGGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ

Protein Analysis

200

Amino Acids

23.03

Weight (kDa)

9.67

Isoelectric Point (pI)

38.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016939)

Species Orthologous Gene IDs
malus_domestica MD08G1221200.v1.1
prunus_persica Prupe.1G558200_v2.0.a1
pyrus_communis pycom15g36670
rosa_chinensis RchiOBHm_Chr7g0226211
rosa_laevigata RLG00000001758
rosa_multiflora Rmu_sc0001350.1_g000004 Rmu_sc0013267.1_g000006
rosa_roxburghii Rroxscaffold_3G00233120
rosa_rugosa Rorug07G0235700
rosa_samantha Rh7AG382600 Rh7BG369800 Rh7CG402100 Rh7DG381000
rosa_wichuraiana Rw7G032060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 162
AccII CGCG 1 cut(s) 378
AclWI GGATC 3 cut(s) 296, 359, 372
AcsI RAATTY 2 cut(s) 326, 408
AfaI GTAC 1 cut(s) 421
AgsI TTSAA 4 cut(s) 21, 406, 439, 511
AluBI AGCT 4 cut(s) 38, 109, 205, 257
AluI AGCT 4 cut(s) 38, 109, 205, 257
Alw21I GWGCWC 1 cut(s) 191
AlwI GGATC 3 cut(s) 296, 359, 372
ApeKI GCWGC 2 cut(s) 205, 473
ApoI RAATTY 2 cut(s) 326, 408
AseI ATTAAT 1 cut(s) 228
Asp700I GAANNNNTTC 1 cut(s) 330
AspLEI GCGC 1 cut(s) 378
AsuHPI GGTGA 1 cut(s) 178
BamHI GGATCC 1 cut(s) 364
BanII GRGCYC 1 cut(s) 577
Bbv12I GWGCWC 1 cut(s) 191
BbvI GCAGC 2 cut(s) 192, 485
BccI CCATC 3 cut(s) 167, 436, 480
BceAI ACGGC 1 cut(s) 513
BfaI CTAG 2 cut(s) 426, 598
BisI GCNGC 2 cut(s) 206, 474
BlsI GCNGC 2 cut(s) 207, 475
BmiI GGNNCC 1 cut(s) 366
BplI GAGNNNNNCTC 2 cut(s) 559, 591
BpuEI CTTGAG 1 cut(s) 524
BsaJI CCNNGG 3 cut(s) 321, 460, 591
BsaWI WCCGGW 1 cut(s) 367
BseDI CCNNGG 3 cut(s) 321, 460, 591
BseGI GGATG 2 cut(s) 178, 283
BseRI GAGGAG 1 cut(s) 583
BseXI GCAGC 2 cut(s) 192, 485
BsgI GTGCAG 1 cut(s) 492
Bsh1236I CGCG 1 cut(s) 378
BsiHKAI GWGCWC 1 cut(s) 191
BsiSI CCGG 1 cut(s) 368
Bsp1286I GDGCHC 2 cut(s) 191, 577
Bsp143I GATC 3 cut(s) 128, 301, 364
Bsp19I CCATGG 2 cut(s) 460, 591
BspFNI CGCG 1 cut(s) 378
BspLI GGNNCC 1 cut(s) 366
BspPI GGATC 3 cut(s) 296, 359, 372
BspQI GCTCTTC 1 cut(s) 279
BssECI CCNNGG 3 cut(s) 321, 460, 591
BssMI GATC 3 cut(s) 128, 301, 364
BssT1I CCWWGG 3 cut(s) 321, 460, 591
Bst4CI ACNGT 1 cut(s) 32
Bst6I CTCTTC 2 cut(s) 279, 506
BstC8I GCNNGC 1 cut(s) 559
BstDEI CTNAG 1 cut(s) 209
BstDSI CCRYGG 2 cut(s) 460, 591
BstF5I GGATG 2 cut(s) 178, 283
BstFNI CGCG 1 cut(s) 378
BstHHI GCGC 1 cut(s) 378
BstKTI GATC 3 cut(s) 131, 304, 367
BstMBI GATC 3 cut(s) 128, 301, 364
BstNSI RCATGY 1 cut(s) 126
BstUI CGCG 1 cut(s) 378
BstV1I GCAGC 2 cut(s) 192, 485
BstX2I RGATCY 1 cut(s) 364
BstXI CCANNNNNNTGG 1 cut(s) 467
BstYI RGATCY 1 cut(s) 364
BtgI CCRYGG 2 cut(s) 460, 591
BtsCI GGATG 2 cut(s) 178, 283
BtsIMutI CAGTG 1 cut(s) 37
Cac8I GCNNGC 1 cut(s) 559
CfoI GCGC 1 cut(s) 378
CseI GACGC 1 cut(s) 364
Csp6I GTAC 1 cut(s) 420
CviAII CATG 6 cut(s) 86, 123, 268, 299, 461, 592
CviQI GTAC 1 cut(s) 420
DdeI CTNAG 1 cut(s) 209
DpnI GATC 3 cut(s) 130, 303, 366
DpnII GATC 3 cut(s) 128, 301, 364
Eam1104I CTCTTC 2 cut(s) 279, 506
EarI CTCTTC 2 cut(s) 279, 506
Eco130I CCWWGG 3 cut(s) 321, 460, 591
Eco24I GRGCYC 1 cut(s) 577
Eco32I GATATC 1 cut(s) 281
EcoRV GATATC 1 cut(s) 281
EcoT14I CCWWGG 3 cut(s) 321, 460, 591
EcoT38I GRGCYC 1 cut(s) 577
ErhI CCWWGG 3 cut(s) 321, 460, 591
FaeI CATG 6 cut(s) 89, 126, 271, 302, 464, 595
FatI CATG 6 cut(s) 85, 122, 267, 298, 460, 591
Fnu4HI GCNGC 2 cut(s) 206, 474
FokI GGATG 2 cut(s) 185, 270
FriOI GRGCYC 1 cut(s) 577
Fsp4HI GCNGC 2 cut(s) 206, 474
FspBI CTAG 2 cut(s) 426, 598
GlaI GCGC 1 cut(s) 377
GluI GCNGC 2 cut(s) 206, 474
HapII CCGG 1 cut(s) 368
HgaI GACGC 1 cut(s) 364
HhaI GCGC 1 cut(s) 378
Hin1II CATG 6 cut(s) 89, 126, 271, 302, 464, 595
Hin6I GCGC 1 cut(s) 376
HinP1I GCGC 1 cut(s) 376
HindIII AAGCTT 1 cut(s) 255
HinfI GANTC 2 cut(s) 146, 340
HpaII CCGG 1 cut(s) 368
HphI GGTGA 1 cut(s) 178
Hpy188I TCNGA 1 cut(s) 364
Hpy188III TCNNGA 3 cut(s) 287, 439, 503
HpyAV CCTTC 4 cut(s) 163, 315, 535, 539
HpyCH4III ACNGT 1 cut(s) 32
HpyCH4IV ACGT 1 cut(s) 291
HpyCH4V TGCA 2 cut(s) 126, 473
HpyF3I CTNAG 1 cut(s) 209
HpySE526I ACGT 1 cut(s) 291
Hsp92II CATG 6 cut(s) 89, 126, 271, 302, 464, 595
HspAI GCGC 1 cut(s) 376
Kzo9I GATC 3 cut(s) 128, 301, 364
LguI GCTCTTC 1 cut(s) 279
LpnPI CCDG 3 cut(s) 300, 329, 381
Lsp1109I GCAGC 2 cut(s) 192, 485
MaeI CTAG 2 cut(s) 426, 598
MaeII ACGT 1 cut(s) 291
MalI GATC 3 cut(s) 130, 303, 366
MboI GATC 3 cut(s) 128, 301, 364
MboII GAAGA 4 cut(s) 266, 306, 392, 523
MflI RGATCY 1 cut(s) 364
MhlI GDGCHC 2 cut(s) 191, 577
MluCI AATT 6 cut(s) 117, 139, 193, 326, 395, 408
MlyI GAGTC 1 cut(s) 155
MmeI TCCRAC 1 cut(s) 546
MnlI CCTC 3 cut(s) 507, 561, 564
MroXI GAANNNNTTC 1 cut(s) 330
MseI TTAA 3 cut(s) 105, 116, 228
MslI CAYNNNNRTG 1 cut(s) 84
MspI CCGG 1 cut(s) 368
MvnI CGCG 1 cut(s) 378
NcoI CCATGG 2 cut(s) 460, 591
NdeII GATC 3 cut(s) 128, 301, 364
NlaIII CATG 6 cut(s) 89, 126, 271, 302, 464, 595
NlaIV GGNNCC 1 cut(s) 366
NspI RCATGY 1 cut(s) 126
PciSI GCTCTTC 1 cut(s) 279
PdmI GAANNNNTTC 1 cut(s) 330
PfeI GAWTC 1 cut(s) 340
PkrI GCNGC 2 cut(s) 207, 475
PleI GAGTC 1 cut(s) 154
PpsI GAGTC 1 cut(s) 154
PshBI ATTAAT 1 cut(s) 228
PsiI TTATAA 1 cut(s) 162
PspN4I GGNNCC 1 cut(s) 366
PsuI RGATCY 1 cut(s) 364
RsaI GTAC 1 cut(s) 421
RsaNI GTAC 1 cut(s) 420
RseI CAYNNNNRTG 1 cut(s) 84
SapI GCTCTTC 1 cut(s) 279
SaqAI TTAA 3 cut(s) 105, 116, 228
SatI GCNGC 2 cut(s) 206, 474
Sau3AI GATC 3 cut(s) 128, 301, 364
SchI GAGTC 1 cut(s) 155
SduI GDGCHC 2 cut(s) 191, 577
SetI ASST 8 cut(s) 40, 46, 52, 111, 168, 207, 259, 294
SmiMI CAYNNNNRTG 1 cut(s) 84
SmlI CTYRAG 1 cut(s) 503
SmoI CTYRAG 1 cut(s) 503
Sse9I AATT 6 cut(s) 117, 139, 193, 326, 395, 408
SspI AATATT 2 cut(s) 226, 583
SspMI CTAG 2 cut(s) 426, 598
StyI CCWWGG 3 cut(s) 321, 460, 591
TaaI ACNGT 1 cut(s) 32
TaiI ACGT 1 cut(s) 294
TaqI TCGA 2 cut(s) 277, 334
TasI AATT 6 cut(s) 117, 139, 193, 326, 395, 408
TfiI GAWTC 1 cut(s) 340
Tru1I TTAA 3 cut(s) 105, 116, 228
Tru9I TTAA 3 cut(s) 105, 116, 228
TscAI CASTG 1 cut(s) 37
TseI GCWGC 2 cut(s) 205, 473
TspDTI ATGAA 2 cut(s) 17, 102
TspRI CASTG 1 cut(s) 37
VspI ATTAAT 1 cut(s) 228
XapI RAATTY 2 cut(s) 326, 408
XceI RCATGY 1 cut(s) 126
XcmI CCANNNNNNNNNTGG 1 cut(s) 529
XmnI GAANNNNTTC 1 cut(s) 330
XspI CTAG 2 cut(s) 426, 598
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.