Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0003723

Physical Location & Seq

Genomic Coordinates Reverse (-)

21619814 .. 21625253

Gene Structure 5440 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0235700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2121 bp

ATGGGTTGCACTGTGAGAGAGAAGCACGTCCGAACGAATCGGAGGATCCGATCCGTGAAAACCGATTTCGAGCATTGCTGCTACGTCGAGAGAGCCTCAATCGCGAAATCGGTGCTCGAATCGGGCCTCAAACCCTTCAATACTCAAAACCCTAATTCGGCCCAGAGGCCCAATTCCGACGAGACCGGCTGGGGCTACTGCACTGAGGACCAATTGGAGGAGCTTCTGTTGAAGAATCTGGAGTTTCTCTACAATGAGGCGATTTCCAAGCTAGTTGCCTTGGGTTACGACGAGGACCTTGCCCTCAAAGCCATTTTGAGAAATGGGCACTGCTACGGCGGCATGGATGTCTTGACTAACATCATGCACAACTCGTTGGCTTATTTGAATACTAGTTCCGGGAATTCCGAGGATTCGGAGCCGGTTTTCGCTGATTTGAGGCAGTTGGAGGAGTATTCGCTGGCCGGGATGGTGTGTATGTTGCAGCAGGTTAGGCCGAGGTTGAGTAAAGGTGATGCCATGTGGTGTTTGCTAATGAGTGATCTTCATGTGGGGAGGGCCAGTACTATGGAGATTCCGGTGCTTCCTAGCGCAGGGAATGAGGGTAGTGCTGCGGCCGCTAGTAATGTGGAGACTGGGGGTAATGGGAGCCATTCTGTTGGTGTCATGGCCCCCGCGCTTTGTAGGTTTCATGGCGGGTGGGGTTTTGGCAATGGGGGGAGTTCGGAGTTTCCTGTTCATGGGTTTTTGTCCTATGGCGCTGAGCTGACTTTACAGAGGGATATTGAGTGTCCCAAGAGGTTTAATCTTTCTCCTTCAATGAAGTCGTTGTTGAAGAGGAATGTAGCCATGTTTGCAGCCGGTTTTCGAGCAAACTCCAAACAGTTGCATTCGCAACCGCAGGCTTCCCTCAGCAGTTTGACGAGTGGGGATGTGCTGGTTGGATTGGGGGCTGAAGTTGCAGTCCAGCAATCTGAAGAGTCACAGAAGTCAAAGAACCAGGAGGTGGTTAACTCGGTGTTGAGTAAATTTCGTGATTTGAATCTTGATGAGAATTTGGAACTTGTAGGGGAAGATCAAAAGAATGAGGTGATAGTAACTTTACTTCATCAGGTTAAAGAGCTTGAGAAGCAAGTGAAGGAGCGCAAGGAGTGGGCCCACCAGAAGGCTATGCAAGCTGCAAAAAAGCTTAGTCATGATCTAACAGAGCTTAAAATGCTGAGGATGGAAAGAGAGGAGACTCAAAGGTTGAAGAAAGGGAAGCAAACTCTTGAGGACACAACCATGAAGAGGCTCTCCGAGATGGAAAACGCTCTAAGAAAGGCTAGTGGTCAAGTGGACCGGGCAAATGCAGCTGTTAGAAGACTTGAAAATGAGAATGCAGAAATCAGAGCAGAGATGGAGGCTTCTAAACTGAGTGCGTCAGAGTCAGTCAACACCTGTTTAGAGGTTGCAAAGAGGGAGAAAAAGTGCCTGAAGAGGCTTTTGGCTTGGGAGAAGCAAAAAGGTAAGTTGCAGGAAGAGATTGGAGAGGAGAAACAGAGGATTTCAGAATTGCAACAACAGTTAGCTCGTATCAAGCAGGATCAGAAAGAAGCTGAGGTGAAATGGAAGCAGGAGGTGAAGGCTAAGGAGGCAGCCTTGGCACAAGTGGACGAGGAAAGAGTTGCCAAGGAAACAGCTGAGGCTGGTAATAAACGAAAGCTTGAGGCTTTGCGCCTAAAGATAGAAATAGATTTCCAACGTCACAAGGATGATCTCCAAAGACTTGAGCAAGAACTCTCACGTCTAAAATCATCTGCGCAGTCTACTGAATTGCCTCTTCCATCAAATGCTTTGCCAAGAGGAGTCTCTGGTGGTGCAAAACCTCAAGGAGAAACAATTGCCAAGCTGCTTCGTGAATTAGATAACCTGGAGAATTCTGCAGAGAAAGAAGTCAGCTGCGATAGAGAATGCATGATATGCATGAAAGATGAAGTGTCTGTTGTTTTCCTACCCTGTGCTCATCAAGTTCTCTGCGCTAATTGCAATGATGATTATGGCAAGAAAGGTAGAGCTACTTGCCCATGTTGCCGAGCTCCAATTGAACATAGAATTCGTGTTTTTGGTGCAAGTTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ

Protein Analysis

706

Amino Acids

78.73

Weight (kDa)

6.77

Isoelectric Point (pI)

45.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PIR2-like_helical	PF20235	79 - 190	3.4e-26	PIR2-like, helical domain
zf-C3HC4_3	PF13920	649 - 697	8.8e-12	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003723)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25590 AT4G32440 AT4G32440 AT4G32440
fragaria_vesca	FvH4_2g29660 FvH4_2g29660 FvH4_2g29660
malus_domestica	MD08G1144800.v1.1 MD15G1119500.v1.1
prunus_persica	Prupe.1G473100_v2.0.a1 Prupe.1G473100_v2.0.a1 Prupe.1G473100_v2.0.a1 Prupe.1G473100_v2.0.a1
pyrus_communis	pycom08g12210 pycom15g10850
rosa_chinensis	RchiOBHm_Chr6g0298631 RchiOBHm_Chr7g0226201
rosa_laevigata	RLG00000001759
rosa_multiflora	Rmu_co8115666.1_g000001 Rmu_sc0001350.1_g000005 Rmu_sc0034903.1_g000002
rosa_roxburghii	Rroxscaffold_3G00233130 Rroxscaffold_7G00169470
rosa_rugosa	Rorug07G0235600 Rorug07G0235700
rosa_samantha	Rh6AG393200 Rh6BG401000 Rh6DG393600 Rh7AG382500 Rh7BG369600 Rh7CG402000 Rh7DG380800
rosa_wichuraiana	Rw6G034380 Rw7G032050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1803
Acc36I	ACCTGC	1 cut(s)	478
AccB7I	CCANNNNNTGG	1 cut(s)	1006
AccI	GTMKAC	1 cut(s)	1808
AccII	CGCG	2 cut(s)	104, 677
AciI	CCGC	6 cut(s)	339, 614, 618, 675, 696, 899
AclWI	GGATC	4 cut(s)	40, 45, 53, 1593
AcoI	YGGCCR	2 cut(s)	462, 615
AcsI	RAATTY	5 cut(s)	403, 1028, 1054, 1918, 2094
AcuI	CTGAAG	3 cut(s)	975, 996, 1496
AfaI	GTAC	1 cut(s)	565
AfiI	CCNNNNNNNGG	7 cut(s)	157, 217, 593, 740, 1006, 1165, 1290
AgsI	TTSAA	9 cut(s)	139, 232, 388, 819, 835, 1042, 1252, 1370, 2087
AhlI	ACTAGT	1 cut(s)	392
AjiI	CACGTC	2 cut(s)	28, 1787
AjnI	CCWGG	2 cut(s)	999, 1911
AjuI	GAANNNNNNNTTGG	2 cut(s)	1469, 1501
Alw21I	GWGCWC	3 cut(s)	117, 2005, 2080
Alw26I	GTCTC	4 cut(s)	176, 626, 1232, 1855
AlwI	GGATC	4 cut(s)	40, 45, 53, 1593
AoxI	GGCC	9 cut(s)	124, 159, 167, 462, 494, 558, 615, 669, 1155
ApaI	GGGCCC	1 cut(s)	1159
ApeKI	GCWGC	9 cut(s)	78, 484, 611, 857, 1178, 1352, 1637, 1891, 1941
ApoI	RAATTY	5 cut(s)	403, 1028, 1054, 1918, 2094
AspLEI	GCGC	7 cut(s)	593, 679, 761, 1146, 1719, 1804, 2021
AsuC2I	CCSGG	3 cut(s)	400, 466, 1343
AsuHPI	GGTGA	4 cut(s)	524, 1102, 1615, 1633
AvaII	GGWCC	3 cut(s)	208, 295, 1339
BaeGI	GKGCMC	2 cut(s)	330, 1159
BamHI	GGATCC	1 cut(s)	45
BanII	GRGCYC	2 cut(s)	1159, 2080
BarI	GAAGNNNNNNTAC	2 cut(s)	1089, 1121
BbsI	GAAGAC	1 cut(s)	1369
Bbv12I	GWGCWC	3 cut(s)	117, 2005, 2080
BbvCI	CCTCAGC	4 cut(s)	911, 1220, 1599, 1683
BbvI	GCAGC	9 cut(s)	65, 496, 598, 869, 1165, 1364, 1649, 1878, 1928
BccI	CCATC	5 cut(s)	463, 1219, 1297, 1393, 1834
BceAI	ACGGC	1 cut(s)	352
BcgI	CGANNNNNNTGC	4 cut(s)	94, 128, 281, 315
BciT130I	CCWGG	2 cut(s)	1001, 1913
BcnI	CCSGG	3 cut(s)	400, 466, 1343
BcoDI	GTCTC	4 cut(s)	176, 626, 1232, 1855
BcuI	ACTAGT	1 cut(s)	392
BfaI	CTAG	5 cut(s)	272, 393, 588, 621, 1326
BfmI	CTRYAG	1 cut(s)	1923
BfoI	RGCGCY	1 cut(s)	762
BfuAI	ACCTGC	1 cut(s)	478
BlpI	GCTNAGC	1 cut(s)	762
BmcAI	AGTACT	1 cut(s)	565
Bme1390I	CCNGG	5 cut(s)	400, 466, 1001, 1343, 1913
Bme18I	GGWCC	3 cut(s)	208, 295, 1339
BmgBI	CACGTC	2 cut(s)	28, 1787
BmiI	GGNNCC	5 cut(s)	47, 420, 650, 672, 1157
BmrFI	CCNGG	5 cut(s)	400, 466, 1001, 1343, 1913
BmrI	ACTGGG	1 cut(s)	645
BmsI	GCATC	1 cut(s)	505
BmuI	ACTGGG	1 cut(s)	645
BpiI	GAAGAC	1 cut(s)	1369
BplI	GAGNNNNNCTC	2 cut(s)	80, 112
BpmI	CTGGAG	2 cut(s)	260, 1934
Bpu10I	CCTNAGC	5 cut(s)	911, 1220, 1599, 1629, 1683
Bpu1102I	GCTNAGC	1 cut(s)	762
BpuEI	CTTGAG	5 cut(s)	1145, 1292, 1727, 1790, 1854
BpuMI	CCSGG	3 cut(s)	400, 466, 1343
BsaBI	GATNNNNATC	1 cut(s)	1041
BsaI	GGTCTC	1 cut(s)	176
BsaJI	CCNNGG	5 cut(s)	279, 408, 497, 1641, 1671
BsaWI	WCCGGW	1 cut(s)	577
BsaXI	ACNNNNNCTCC	6 cut(s)	212, 242, 547, 577, 1454, 1484
Bsc4I	CCNNNNNNNGG	7 cut(s)	157, 217, 593, 740, 1006, 1165, 1290
Bse118I	RCCGGY	3 cut(s)	185, 421, 860
Bse1I	ACTGG	2 cut(s)	561, 640
Bse3DI	GCAATG	3 cut(s)	73, 718, 2035
Bse8I	GATNNNNATC	1 cut(s)	1041
BseBI	CCWGG	2 cut(s)	1001, 1913
BseDI	CCNNGG	5 cut(s)	279, 408, 497, 1641, 1671
BseGI	GGATG	5 cut(s)	352, 474, 937, 1230, 1759
BseJI	GATNNNNATC	1 cut(s)	1041
BseLI	CCNNNNNNNGG	7 cut(s)	157, 217, 593, 740, 1006, 1165, 1290
BseMI	GCAATG	3 cut(s)	73, 718, 2035
BseMII	CTCAG	7 cut(s)	195, 753, 925, 1211, 1406, 1590, 1674
BseNI	ACTGG	2 cut(s)	561, 640
BseRI	GAGGAG	5 cut(s)	233, 464, 1250, 1547, 1860
BseSI	GKGCMC	2 cut(s)	330, 1159
BseX3I	CGGCCG	1 cut(s)	615
BseXI	GCAGC	9 cut(s)	65, 496, 598, 869, 1165, 1364, 1649, 1878, 1928
BseYI	CCCAGC	1 cut(s)	189
BsgI	GTGCAG	1 cut(s)	184
Bsh1236I	CGCG	2 cut(s)	104, 677
Bsh1285I	CGRYCG	1 cut(s)	618
BshFI	GGCC	9 cut(s)	126, 161, 169, 464, 496, 560, 617, 671, 1157
BsiEI	CGRYCG	1 cut(s)	618
BsiHKAI	GWGCWC	3 cut(s)	117, 2005, 2080
BsiSI	CCGG	7 cut(s)	186, 399, 422, 465, 578, 861, 1342
BslFI	GGGAC	1 cut(s)	777
BslI	CCNNNNNNNGG	7 cut(s)	157, 217, 593, 740, 1006, 1165, 1290
BsmAI	GTCTC	4 cut(s)	176, 626, 1232, 1855
BsmFI	GGGAC	1 cut(s)	777
BsmI	GAATGC	3 cut(s)	889, 1384, 1958
BsnI	GGCC	9 cut(s)	126, 161, 169, 464, 496, 560, 617, 671, 1157
Bso31I	GGTCTC	1 cut(s)	176
Bsp120I	GGGCCC	1 cut(s)	1155
Bsp1286I	GDGCHC	5 cut(s)	117, 330, 1159, 2005, 2080
Bsp143I	GATC	7 cut(s)	45, 50, 541, 1075, 1198, 1585, 1756
Bsp1720I	GCTNAGC	1 cut(s)	762
Bsp68I	TCGCGA	1 cut(s)	104
BspACI	CCGC	6 cut(s)	339, 614, 618, 675, 696, 899
BspANI	GGCC	9 cut(s)	126, 161, 169, 464, 496, 560, 617, 671, 1157
BspCNI	CTCAG	7 cut(s)	196, 754, 924, 1212, 1407, 1591, 1675
BspFNI	CGCG	2 cut(s)	104, 677
BspHI	TCATGA	1 cut(s)	1195
BspLI	GGNNCC	5 cut(s)	47, 420, 650, 672, 1157
BspMAI	CTGCAG	1 cut(s)	1927
BspMI	ACCTGC	1 cut(s)	478
BspPI	GGATC	4 cut(s)	40, 45, 53, 1593
BspTNI	GGTCTC	1 cut(s)	176
BsrDI	GCAATG	3 cut(s)	73, 718, 2035
BsrFI	RCCGGY	3 cut(s)	185, 421, 860
BsrI	ACTGG	2 cut(s)	561, 640
BssAI	RCCGGY	3 cut(s)	185, 421, 860
BssECI	CCNNGG	5 cut(s)	279, 408, 497, 1641, 1671
BssMI	GATC	7 cut(s)	45, 50, 541, 1075, 1198, 1585, 1756
BssT1I	CCWWGG	3 cut(s)	279, 1641, 1671
Bst2UI	CCWGG	2 cut(s)	1001, 1913
Bst4CI	ACNGT	3 cut(s)	13, 885, 1566
Bst6I	CTCTTC	6 cut(s)	830, 972, 1283, 1472, 1515, 1827
BstAPI	GCANNNNNTGC	1 cut(s)	1962
BstC8I	GCNNGC	3 cut(s)	462, 903, 1176
BstENI	CCTNNNNNAGG	1 cut(s)	591
BstF5I	GGATG	5 cut(s)	352, 474, 937, 1230, 1759
BstFNI	CGCG	2 cut(s)	104, 677
BstH2I	RGCGCY	1 cut(s)	762
BstHHI	GCGC	7 cut(s)	593, 679, 761, 1146, 1719, 1804, 2021
BstKTI	GATC	7 cut(s)	48, 53, 544, 1078, 1201, 1588, 1759
BstMAI	GTCTC	4 cut(s)	176, 626, 1232, 1855
BstMBI	GATC	7 cut(s)	45, 50, 541, 1075, 1198, 1585, 1756
BstMCI	CGRYCG	1 cut(s)	618
BstNI	CCWGG	2 cut(s)	1001, 1913
BstSCI	CCNGG	5 cut(s)	398, 464, 999, 1341, 1911
BstSFI	CTRYAG	1 cut(s)	1923
BstSLI	GKGCMC	2 cut(s)	330, 1159
BstUI	CGCG	2 cut(s)	104, 677
BstV1I	GCAGC	9 cut(s)	65, 496, 598, 869, 1165, 1364, 1649, 1878, 1928
BstV2I	GAAGAC	1 cut(s)	1369
BstX2I	RGATCY	1 cut(s)	45
BstXI	CCANNNNNNTGG	2 cut(s)	568, 659
BstYI	RGATCY	1 cut(s)	45
BstZI	CGGCCG	1 cut(s)	615
BsuRI	GGCC	9 cut(s)	126, 161, 169, 464, 496, 560, 617, 671, 1157
BtrI	CACGTC	2 cut(s)	28, 1787
BtsCI	GGATG	5 cut(s)	352, 474, 937, 1230, 1759
BtsI	GCAGTG	1 cut(s)	328
BtsIMutI	CAGTG	3 cut(s)	9, 201, 328
BtuMI	TCGCGA	1 cut(s)	104
BveI	ACCTGC	1 cut(s)	478
Cac8I	GCNNGC	3 cut(s)	462, 903, 1176
CciI	TCATGA	1 cut(s)	1195
CciNI	GCGGCCGC	1 cut(s)	615
CfoI	GCGC	7 cut(s)	593, 679, 761, 1146, 1719, 1804, 2021
Cfr10I	RCCGGY	3 cut(s)	185, 421, 860
CseI	GACGC	1 cut(s)	1410
Csp6I	GTAC	1 cut(s)	564
CviQI	GTAC	1 cut(s)	564
DpnI	GATC	7 cut(s)	47, 52, 543, 1077, 1200, 1587, 1758
DpnII	GATC	7 cut(s)	45, 50, 541, 1075, 1198, 1585, 1756
EaeI	YGGCCR	2 cut(s)	462, 615
EagI	CGGCCG	1 cut(s)	615
Eam1104I	CTCTTC	6 cut(s)	830, 972, 1283, 1472, 1515, 1827
EarI	CTCTTC	6 cut(s)	830, 972, 1283, 1472, 1515, 1827
Ecl136II	GAGCTC	1 cut(s)	2078
EclXI	CGGCCG	1 cut(s)	615
Eco130I	CCWWGG	3 cut(s)	279, 1641, 1671
Eco24I	GRGCYC	2 cut(s)	1159, 2080
Eco31I	GGTCTC	1 cut(s)	176
Eco47I	GGWCC	3 cut(s)	208, 295, 1339
Eco52I	CGGCCG	1 cut(s)	615
Eco53kI	GAGCTC	1 cut(s)	2078
Eco57I	CTGAAG	3 cut(s)	975, 996, 1496
EcoICRI	GAGCTC	1 cut(s)	2078
EcoNI	CCTNNNNNAGG	1 cut(s)	591
EcoO109I	RGGNCCY	1 cut(s)	295
EcoRI	GAATTC	3 cut(s)	403, 1918, 2094
EcoRII	CCWGG	2 cut(s)	999, 1911
EcoT14I	CCWWGG	3 cut(s)	279, 1641, 1671
EcoT22I	ATGCAT	2 cut(s)	1958, 1967
EcoT38I	GRGCYC	2 cut(s)	1159, 2080
ErhI	CCWWGG	3 cut(s)	279, 1641, 1671
FaqI	GGGAC	1 cut(s)	777
FauI	CCCGC	2 cut(s)	682, 689
FblI	GTMKAC	1 cut(s)	1808
FokI	GGATG	5 cut(s)	359, 481, 944, 1237, 1766
FriOI	GRGCYC	2 cut(s)	1159, 2080
FspBI	CTAG	5 cut(s)	272, 393, 588, 621, 1326
FspI	TGCGCA	1 cut(s)	1803
GlaI	GCGC	7 cut(s)	592, 678, 760, 1145, 1718, 1803, 2020
GsaI	CCCAGC	1 cut(s)	193
GsuI	CTGGAG	2 cut(s)	260, 1934
HaeII	RGCGCY	1 cut(s)	762
HaeIII	GGCC	9 cut(s)	126, 161, 169, 464, 496, 560, 617, 671, 1157
HapII	CCGG	7 cut(s)	186, 399, 422, 465, 578, 861, 1342
HgaI	GACGC	1 cut(s)	1410
HhaI	GCGC	7 cut(s)	593, 679, 761, 1146, 1719, 1804, 2021
Hin6I	GCGC	7 cut(s)	591, 677, 759, 1144, 1717, 1802, 2019
HinP1I	GCGC	7 cut(s)	591, 677, 759, 1144, 1717, 1802, 2019
HincII	GTYRAC	2 cut(s)	1012, 1435
HindII	GTYRAC	2 cut(s)	1012, 1435
HindIII	AAGCTT	2 cut(s)	1187, 1703
HpaI	GTTAAC	1 cut(s)	1012
HpaII	CCGG	7 cut(s)	186, 399, 422, 465, 578, 861, 1342
HphI	GGTGA	4 cut(s)	524, 1102, 1615, 1633
Hpy166II	GTNNAC	5 cut(s)	1012, 1339, 1435, 1654, 1809
Hpy188III	TCNNGA	9 cut(s)	88, 103, 239, 352, 1034, 1046, 1196, 1271, 1898
Hpy8I	GTNNAC	5 cut(s)	1012, 1339, 1435, 1654, 1809
Hpy99I	CGWCG	3 cut(s)	89, 182, 293
HpyAV	CCTTC	5 cut(s)	145, 825, 1132, 1159, 1618
HpyCH4III	ACNGT	3 cut(s)	13, 885, 1566
HpyCH4IV	ACGT	4 cut(s)	27, 84, 1744, 1786
HpySE526I	ACGT	4 cut(s)	27, 84, 1744, 1786
HspAI	GCGC	7 cut(s)	591, 677, 759, 1144, 1717, 1802, 2019
KspAI	GTTAAC	1 cut(s)	1012
Kzo9I	GATC	7 cut(s)	45, 50, 541, 1075, 1198, 1585, 1756
LmnI	GCTCC	5 cut(s)	220, 418, 648, 1141, 2083
Lsp1109I	GCAGC	9 cut(s)	65, 496, 598, 869, 1165, 1364, 1649, 1878, 1928
LweI	GCATC	1 cut(s)	505
MaeI	CTAG	5 cut(s)	272, 393, 588, 621, 1326
MaeII	ACGT	4 cut(s)	27, 84, 1744, 1786
MaeIII	GTNAC	4 cut(s)	284, 981, 1096, 1745
MalI	GATC	7 cut(s)	47, 52, 543, 1077, 1200, 1587, 1758
MboI	GATC	7 cut(s)	45, 50, 541, 1075, 1198, 1585, 1756
MfeI	CAATTG	3 cut(s)	212, 1881, 2082
MflI	RGATCY	1 cut(s)	45
MhlI	GDGCHC	5 cut(s)	117, 330, 1159, 2005, 2080
MlyI	GAGTC	4 cut(s)	989, 1234, 1436, 1857
MmeI	TCCRAC	4 cut(s)	201, 426, 922, 1765
Mph1103I	ATGCAT	2 cut(s)	1958, 1967
MseI	TTAA	4 cut(s)	804, 1011, 1116, 1212
MslI	CAYNNNNRTG	2 cut(s)	1283, 1752
MspA1I	CMGCKG	3 cut(s)	1355, 1682, 1941
MspI	CCGG	7 cut(s)	186, 399, 422, 465, 578, 861, 1342
MspR9I	CCNGG	5 cut(s)	400, 466, 1001, 1343, 1913
MunI	CAATTG	3 cut(s)	212, 1881, 2082
Mva1269I	GAATGC	3 cut(s)	889, 1384, 1958
MvaI	CCWGG	2 cut(s)	1001, 1913
MvnI	CGCG	2 cut(s)	104, 677
NciI	CCSGG	3 cut(s)	400, 466, 1343
NdeII	GATC	7 cut(s)	45, 50, 541, 1075, 1198, 1585, 1756
NlaIV	GGNNCC	5 cut(s)	47, 420, 650, 672, 1157
NmeAIII	GCCGAG	2 cut(s)	522, 2099
NmuCI	GTSAC	2 cut(s)	981, 1745
NotI	GCGGCCGC	1 cut(s)	615
NruI	TCGCGA	1 cut(s)	104
NsbI	TGCGCA	1 cut(s)	1803
NsiI	ATGCAT	2 cut(s)	1958, 1967
PagI	TCATGA	1 cut(s)	1195
PcsI	WCGNNNNNNNCGW	1 cut(s)	46
PctI	GAATGC	3 cut(s)	889, 1384, 1958
PfeI	GAWTC	6 cut(s)	37, 119, 235, 413, 574, 1042
PflMI	CCANNNNNTGG	1 cut(s)	1006
PfoI	TCCNGGA	1 cut(s)	398
PleI	GAGTC	4 cut(s)	988, 1234, 1435, 1856
PpsI	GAGTC	4 cut(s)	988, 1234, 1435, 1856
PpuMI	RGGWCCY	1 cut(s)	295
Psp124BI	GAGCTC	1 cut(s)	2080
Psp5II	RGGWCCY	1 cut(s)	295
Psp6I	CCWGG	2 cut(s)	999, 1911
PspFI	CCCAGC	1 cut(s)	189
PspGI	CCWGG	2 cut(s)	999, 1911
PspN4I	GGNNCC	5 cut(s)	47, 420, 650, 672, 1157
PspOMI	GGGCCC	1 cut(s)	1155
PspPPI	RGGWCCY	1 cut(s)	295
PstI	CTGCAG	1 cut(s)	1927
PsuI	RGATCY	1 cut(s)	45
PvuII	CAGCTG	3 cut(s)	1355, 1682, 1941
RruI	TCGCGA	1 cut(s)	104
RsaI	GTAC	1 cut(s)	565
RsaNI	GTAC	1 cut(s)	564
RseI	CAYNNNNRTG	2 cut(s)	1283, 1752
SacI	GAGCTC	1 cut(s)	2080
SaqAI	TTAA	4 cut(s)	804, 1011, 1116, 1212
Sau3AI	GATC	7 cut(s)	45, 50, 541, 1075, 1198, 1585, 1756
ScaI	AGTACT	1 cut(s)	565
SchI	GAGTC	4 cut(s)	989, 1234, 1436, 1857
ScrFI	CCNGG	5 cut(s)	400, 466, 1001, 1343, 1913
SduI	GDGCHC	5 cut(s)	117, 330, 1159, 2005, 2080
SfaNI	GCATC	1 cut(s)	505
SfcI	CTRYAG	1 cut(s)	1923
SinI	GGWCC	3 cut(s)	208, 295, 1339
SmiMI	CAYNNNNRTG	2 cut(s)	1283, 1752
SmlI	CTYRAG	5 cut(s)	1124, 1271, 1706, 1769, 1869
SmoI	CTYRAG	5 cut(s)	1124, 1271, 1706, 1769, 1869
SpeI	ACTAGT	1 cut(s)	392
SsiI	CCGC	6 cut(s)	339, 614, 618, 675, 696, 899
SspMI	CTAG	5 cut(s)	272, 393, 588, 621, 1326
SstI	GAGCTC	1 cut(s)	2080
StyD4I	CCNGG	5 cut(s)	398, 464, 999, 1341, 1911
StyI	CCWWGG	3 cut(s)	279, 1641, 1671
TaaI	ACNGT	3 cut(s)	13, 885, 1566
TaiI	ACGT	4 cut(s)	30, 87, 1747, 1789
TaqI	TCGA	4 cut(s)	69, 87, 117, 868
TatI	WGTACW	1 cut(s)	563
TauI	GCSGC	3 cut(s)	342, 617, 620
TfiI	GAWTC	6 cut(s)	37, 119, 235, 413, 574, 1042
Tru1I	TTAA	4 cut(s)	804, 1011, 1116, 1212
Tru9I	TTAA	4 cut(s)	804, 1011, 1116, 1212
TscAI	CASTG	3 cut(s)	16, 208, 335
TseFI	GTSAC	2 cut(s)	981, 1745
TseI	GCWGC	9 cut(s)	78, 484, 611, 857, 1178, 1352, 1637, 1891, 1941
Tsp45I	GTSAC	2 cut(s)	981, 1745
TspDTI	ATGAA	8 cut(s)	536, 680, 728, 836, 1097, 1301, 1982, 1989
TspGWI	ACGGA	1 cut(s)	43
TspRI	CASTG	3 cut(s)	16, 208, 335
Van91I	CCANNNNNTGG	1 cut(s)	1006
VpaK11BI	GGWCC	3 cut(s)	208, 295, 1339
XagI	CCTNNNNNAGG	1 cut(s)	591
XapI	RAATTY	5 cut(s)	403, 1028, 1054, 1918, 2094
XmiI	GTMKAC	1 cut(s)	1808
XspI	CTAG	5 cut(s)	272, 393, 588, 621, 1326
ZrmI	AGTACT	1 cut(s)	565
Zsp2I	ATGCAT	2 cut(s)	1958, 1967

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.