AT2G25590

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0003723
Physical Location & Seq
Forward (+)
10890903 .. 10893772
2870 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G25590.1

Sequence Viewer

Length: 1146 bp
ATGAGATTCAGAAGAGGAAGTAGAGTTGAGGTGTTTAGCATCAAAGAAGCCTCTTATGGTGTGTGGCGATCAGCGGAGATTATATCTGGTAATGGTCACACTTACAATGTTAGATATTACTCTTTTGAAATTGCTAACAATGAGGTTGTTGAGGATAGAGTTCCAAGGAAGATAATTAGGCCGTGTCCTCCGCAAGTAGATGTTGATAGATGGGAAGCTGGTGAATTGGTTGAGGTTCTTGATAATAATATTTCATGGAAAACTGCTACTGTCTTGGAGGTGTTATCTGGAAGATATTATGTTGTTCGGTTACTTGGTGCTAAAGCAGAACTCACGGTTCACAAAGTTTACCTCAGGGCTAGACAATCTTGGCAAGATGAAAGATGGGTTATGATTGGAAAGGAGACTAGTGTTGCTTCTTTAAGAGTGTTGAAGAGACCTTCACCATGTGATTGGGCGGAGTCTGCTGAATCATGCACTAGAAGTCCTAAGAAGATACGATCATTGGAGGAAGAAGGACACCAGCACCGGTTTGCTTCTTCTTCAGCACAGAAGGTATATAATGATAGTTCTGAACGTAGGGGTGTTGAATTGTACGTGAAAGCTTCGTGTAACGAGAATAAAAGTGGTTTCCGTCAAATGGTCAGGATGGTGCCGACTCTTGTAGTAGTGATGCTGAATCTTCAAAAGAAGCATCTGGATGCAGAGATGAAGCTAGGCGAAAACATTCATTATCAGCCGAAGGATAATCATTTACAGTCTGCAGGTTGGATAAGTTTGCCGACGATTGCAAATGTGACCAGTAGATTGTGGAACTGTCCATGCTTGTTTGTTGGTGGTATATGTACAGTTGGCCTGGTCATCAAAATCTACAGAAAAGTACTCAATTTTTATGAAATCAAGGCTATGACATTTCAAGCTGAATTACCGAGCTTAAAGAAATTGAAAAGACTCAGAGAGGAAGAAGAAGCCTTGCGAATTGCGATGTTCTTATGCCATCACTATCGGTTTTATATTCGCTTATACTCTACACTAAGAAAAATAATCGAATTGAATATTTCTGATTCTTTAGAACTCATGTTAATTCAAAATTTTATGGTTGTTACAAAACTTATGAACAACATTATGATCTGCATTAACTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Agenet ENT

Protein Analysis

381

Amino Acids

44.21

Weight (kDa)

9.38

Isoelectric Point (pI)

55.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Agenet PF05641 6 - 64 1.2e-14 Agenet domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1144
Acc36I ACCTGC 1 cut(s) 755
AccB1I GGYRCC 1 cut(s) 652
AciI CCGC 3 cut(s) 74, 191, 458
AcsI RAATTY 1 cut(s) 1090
AcuI CTGAAG 1 cut(s) 528
AdeI CACNNNGTG 1 cut(s) 449
AfaI GTAC 3 cut(s) 596, 847, 882
AfiI CCNNNNNNNGG 1 cut(s) 640
AgeI ACCGGT 1 cut(s) 528
AgsI TTSAA 8 cut(s) 128, 433, 590, 686, 917, 946, 1054, 1088
AhlI ACTAGT 1 cut(s) 407
AjnI CCWGG 1 cut(s) 855
AluBI AGCT 5 cut(s) 218, 605, 715, 920, 933
AluI AGCT 5 cut(s) 218, 605, 715, 920, 933
Alw26I GTCTC 2 cut(s) 398, 430
AoxI GGCC 2 cut(s) 179, 853
ApoI RAATTY 1 cut(s) 1090
AsiGI ACCGGT 1 cut(s) 528
Asp700I GAANNNNTTC 1 cut(s) 726
AsuHPI GGTGA 2 cut(s) 233, 435
AxyI CCTNAGG 1 cut(s) 353
BanI GGYRCC 1 cut(s) 652
BccI CCATC 4 cut(s) 204, 378, 643, 1005
BceAI ACGGC 1 cut(s) 166
BciT130I CCWGG 1 cut(s) 857
BcoDI GTCTC 2 cut(s) 398, 430
BcuI ACTAGT 1 cut(s) 407
BfaI CTAG 4 cut(s) 360, 408, 480, 716
BfmI CTRYAG 2 cut(s) 762, 871
BfuAI ACCTGC 1 cut(s) 755
BmcAI AGTACT 1 cut(s) 882
Bme1390I CCNGG 1 cut(s) 857
BmiI GGNNCC 1 cut(s) 654
BmrFI CCNGG 1 cut(s) 857
BmsI GCATC 4 cut(s) 48, 663, 691, 703
BsaAI YACGTR 1 cut(s) 598
BsaI GGTCTC 1 cut(s) 430
BsaJI CCNNGG 1 cut(s) 164
BsaWI WCCGGW 1 cut(s) 528
Bsc4I CCNNNNNNNGG 1 cut(s) 640
Bse118I RCCGGY 1 cut(s) 528
Bse1I ACTGG 1 cut(s) 801
Bse21I CCTNAGG 1 cut(s) 353
BseBI CCWGG 1 cut(s) 857
BseDI CCNNGG 1 cut(s) 164
BseGI GGATG 2 cut(s) 654, 706
BseLI CCNNNNNNNGG 1 cut(s) 640
BseMII CTCAG 2 cut(s) 367, 967
BseNI ACTGG 1 cut(s) 801
BshFI GGCC 2 cut(s) 181, 855
BshNI GGYRCC 1 cut(s) 652
BshTI ACCGGT 1 cut(s) 528
BsiSI CCGG 1 cut(s) 529
BslI CCNNNNNNNGG 1 cut(s) 640
BsmAI GTCTC 2 cut(s) 398, 430
BsnI GGCC 2 cut(s) 181, 855
Bso31I GGTCTC 1 cut(s) 430
Bsp1407I TGTACA 1 cut(s) 845
Bsp143I GATC 3 cut(s) 68, 500, 1128
BspACI CCGC 3 cut(s) 74, 191, 458
BspANI GGCC 2 cut(s) 181, 855
BspCNI CTCAG 2 cut(s) 366, 966
BspLI GGNNCC 1 cut(s) 654
BspMAI CTGCAG 1 cut(s) 766
BspMI ACCTGC 1 cut(s) 755
BspT107I GGYRCC 1 cut(s) 652
BspTNI GGTCTC 1 cut(s) 430
BsrFI RCCGGY 1 cut(s) 528
BsrGI TGTACA 1 cut(s) 845
BsrI ACTGG 1 cut(s) 801
BssAI RCCGGY 1 cut(s) 528
BssECI CCNNGG 1 cut(s) 164
BssMI GATC 3 cut(s) 68, 500, 1128
BssT1I CCWWGG 1 cut(s) 164
Bst2UI CCWGG 1 cut(s) 857
Bst4CI ACNGT 5 cut(s) 271, 337, 759, 818, 850
Bst6I CTCTTC 2 cut(s) 7, 428
BstAUI TGTACA 1 cut(s) 845
BstBAI YACGTR 1 cut(s) 598
BstDEI CTNAG 4 cut(s) 353, 489, 953, 1034
BstF5I GGATG 2 cut(s) 654, 706
BstKTI GATC 3 cut(s) 71, 503, 1131
BstMAI GTCTC 2 cut(s) 398, 430
BstMBI GATC 3 cut(s) 68, 500, 1128
BstMWI GCNNNNNNNGC 1 cut(s) 464
BstNI CCWGG 1 cut(s) 857
BstSCI CCNGG 1 cut(s) 855
BstSFI CTRYAG 2 cut(s) 762, 871
BstXI CCANNNNNNTGG 1 cut(s) 453
Bsu36I CCTNAGG 1 cut(s) 353
BsuRI GGCC 2 cut(s) 181, 855
BtgZI GCGATG 1 cut(s) 998
BtsCI GGATG 2 cut(s) 654, 706
BveI ACCTGC 1 cut(s) 755
Cfr10I RCCGGY 1 cut(s) 528
Csp6I GTAC 3 cut(s) 595, 846, 881
CspAI ACCGGT 1 cut(s) 528
CviAII CATG 5 cut(s) 255, 447, 474, 822, 1078
CviQI GTAC 3 cut(s) 595, 846, 881
DdeI CTNAG 4 cut(s) 353, 489, 953, 1034
DpnI GATC 3 cut(s) 70, 502, 1130
DpnII GATC 3 cut(s) 68, 500, 1128
DraIII CACNNNGTG 1 cut(s) 449
Eam1104I CTCTTC 2 cut(s) 7, 428
EarI CTCTTC 2 cut(s) 7, 428
EciI GGCGGA 1 cut(s) 473
Eco130I CCWWGG 1 cut(s) 164
Eco31I GGTCTC 1 cut(s) 430
Eco57I CTGAAG 1 cut(s) 528
Eco81I CCTNAGG 1 cut(s) 353
EcoRII CCWGG 1 cut(s) 855
EcoT14I CCWWGG 1 cut(s) 164
ErhI CCWWGG 1 cut(s) 164
FaeI CATG 5 cut(s) 258, 450, 477, 825, 1081
FatI CATG 5 cut(s) 254, 446, 473, 821, 1077
FokI GGATG 2 cut(s) 661, 713
FspBI CTAG 4 cut(s) 360, 408, 480, 716
HaeIII GGCC 2 cut(s) 181, 855
HapII CCGG 1 cut(s) 529
Hin1II CATG 5 cut(s) 258, 450, 477, 825, 1081
HindIII AAGCTT 1 cut(s) 603
HinfI GANTC 7 cut(s) 6, 461, 470, 658, 679, 951, 1064
HpaII CCGG 1 cut(s) 529
HphI GGTGA 2 cut(s) 233, 435
Hpy166II GTNNAC 2 cut(s) 340, 349
Hpy188I TCNGA 4 cut(s) 11, 574, 956, 1063
Hpy188III TCNNGA 4 cut(s) 239, 288, 646, 698
Hpy8I GTNNAC 2 cut(s) 340, 349
Hpy99I CGWCG 1 cut(s) 787
HpyAV CCTTC 4 cut(s) 450, 509, 547, 736
HpyCH4III ACNGT 5 cut(s) 271, 337, 759, 818, 850
HpyCH4IV ACGT 2 cut(s) 577, 597
HpyCH4V TGCA 5 cut(s) 477, 704, 764, 791, 1134
HpyF10VI GCNNNNNNNGC 1 cut(s) 464
HpyF3I CTNAG 4 cut(s) 353, 489, 953, 1034
HpySE526I ACGT 2 cut(s) 577, 597
Hsp92II CATG 5 cut(s) 258, 450, 477, 825, 1081
Kzo9I GATC 3 cut(s) 68, 500, 1128
LweI GCATC 4 cut(s) 48, 663, 691, 703
MaeI CTAG 4 cut(s) 360, 408, 480, 716
MaeII ACGT 2 cut(s) 577, 597
MaeIII GTNAC 5 cut(s) 95, 309, 611, 796, 1102
MalI GATC 3 cut(s) 70, 502, 1130
MboI GATC 3 cut(s) 68, 500, 1128
MlyI GAGTC 3 cut(s) 470, 652, 945
MmeI TCCRAC 1 cut(s) 749
MroXI GAANNNNTTC 1 cut(s) 726
MseI TTAA 4 cut(s) 422, 935, 1082, 1137
MslI CAYNNNNRTG 1 cut(s) 699
MspA1I CMGCKG 1 cut(s) 74
MspI CCGG 1 cut(s) 529
MspR9I CCNGG 1 cut(s) 857
MvaI CCWGG 1 cut(s) 857
MwoI GCNNNNNNNGC 1 cut(s) 464
NdeII GATC 3 cut(s) 68, 500, 1128
NlaIII CATG 5 cut(s) 258, 450, 477, 825, 1081
NlaIV GGNNCC 1 cut(s) 654
NmuCI GTSAC 2 cut(s) 95, 796
PdmI GAANNNNTTC 1 cut(s) 726
PfeI GAWTC 4 cut(s) 6, 470, 679, 1064
PinAI ACCGGT 1 cut(s) 528
PleI GAGTC 3 cut(s) 469, 652, 945
PpsI GAGTC 3 cut(s) 469, 652, 945
Ppu21I YACGTR 1 cut(s) 598
PsiI TTATAA 1 cut(s) 1144
Psp6I CCWGG 1 cut(s) 855
PspGI CCWGG 1 cut(s) 855
PspN4I GGNNCC 1 cut(s) 654
PstI CTGCAG 1 cut(s) 766
RsaI GTAC 3 cut(s) 596, 847, 882
RsaNI GTAC 3 cut(s) 595, 846, 881
RseI CAYNNNNRTG 1 cut(s) 699
SaqAI TTAA 4 cut(s) 422, 935, 1082, 1137
Sau3AI GATC 3 cut(s) 68, 500, 1128
ScaI AGTACT 1 cut(s) 882
SchI GAGTC 3 cut(s) 470, 652, 945
ScrFI CCNGG 1 cut(s) 857
SfaNI GCATC 4 cut(s) 48, 663, 691, 703
SfcI CTRYAG 2 cut(s) 762, 871
SmiMI CAYNNNNRTG 1 cut(s) 699
SpeI ACTAGT 1 cut(s) 407
SsiI CCGC 3 cut(s) 74, 191, 458
SspI AATATT 2 cut(s) 250, 1057
SspMI CTAG 4 cut(s) 360, 408, 480, 716
StyD4I CCNGG 1 cut(s) 855
StyI CCWWGG 1 cut(s) 164
TaaI ACNGT 5 cut(s) 271, 337, 759, 818, 850
TaiI ACGT 2 cut(s) 580, 600
TaqI TCGA 1 cut(s) 1047
TatI WGTACW 2 cut(s) 845, 880
TfiI GAWTC 4 cut(s) 6, 470, 679, 1064
Tru1I TTAA 4 cut(s) 422, 935, 1082, 1137
Tru9I TTAA 4 cut(s) 422, 935, 1082, 1137
TseFI GTSAC 2 cut(s) 95, 796
Tsp45I GTSAC 2 cut(s) 95, 796
TspDTI ATGAA 6 cut(s) 243, 393, 719, 725, 909, 1130
TspGWI ACGGA 1 cut(s) 623
XapI RAATTY 1 cut(s) 1090
XmnI GAANNNNTTC 1 cut(s) 726
XspI CTAG 4 cut(s) 360, 408, 480, 716
ZrmI AGTACT 1 cut(s) 882
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.