Rmu_co8115666.1_g000001

ENT domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8115666.1
OG0003723
Physical Location & Seq
Reverse (-)
1 .. 609
609 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8115666.1_g000001.1.cds

Sequence Viewer

Length: 357 bp
atgagattcaagaagggggacaaagtggaagtgctaagccaaaaggaggtgccttcaggagcatggcagtgcggtgtgatcgtctcaggcaatggccacacttacggtgttagatatgattggtctcctaacgtggaaggtgaggcaatagtggagagagtcccaagaaaggctattaggccttaccctccgccagttcaaagtgcagatagttggggggtcggcgatgttgttgaggtctttgatgtcggtttctggaagatggctaagttagtgatggtttttgatgaaaactattacctggctaggctacttggatcatccgaggagtttagaatgcacaaatctaggatcagg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Agenet ENT

Protein Analysis

119

Amino Acids

13.55

Weight (kDa)

8.73

Isoelectric Point (pI)

40.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 49
AciI CCGC 2 cut(s) 72, 191
AclWI GGATC 1 cut(s) 325
AcoI YGGCCR 1 cut(s) 94
AcuI CTGAAG 1 cut(s) 39
AfiI CCNNNNNNNGG 2 cut(s) 46, 169
AgsI TTSAA 2 cut(s) 10, 200
AjnI CCWGG 1 cut(s) 300
Alw26I GTCTC 2 cut(s) 88, 129
AlwI GGATC 1 cut(s) 325
AoxI GGCC 2 cut(s) 94, 179
AsuHPI GGTGA 1 cut(s) 152
BalI TGGCCA 1 cut(s) 96
BanI GGYRCC 1 cut(s) 49
BccI CCATC 2 cut(s) 256, 271
BciT130I CCWGG 1 cut(s) 302
BcoDI GTCTC 2 cut(s) 88, 129
BfaI CTAG 2 cut(s) 306, 348
BlpI GCTNAGC 1 cut(s) 35
Bme1390I CCNGG 1 cut(s) 302
BmiI GGNNCC 1 cut(s) 51
BmrFI CCNGG 1 cut(s) 302
Bpu1102I GCTNAGC 1 cut(s) 35
BsaI GGTCTC 1 cut(s) 129
BsaJI CCNNGG 1 cut(s) 324
Bsc4I CCNNNNNNNGG 2 cut(s) 46, 169
Bse1I ACTGG 1 cut(s) 194
Bse3DI GCAATG 1 cut(s) 97
BseBI CCWGG 1 cut(s) 302
BseDI CCNNGG 1 cut(s) 324
BseGI GGATG 1 cut(s) 320
BseLI CCNNNNNNNGG 2 cut(s) 46, 169
BseMI GCAATG 1 cut(s) 97
BseMII CTCAG 1 cut(s) 99
BseNI ACTGG 1 cut(s) 194
BseRI GAGGAG 1 cut(s) 341
BsgI GTGCAG 1 cut(s) 225
BshFI GGCC 2 cut(s) 96, 181
BshNI GGYRCC 1 cut(s) 49
BslFI GGGAC 2 cut(s) 32, 146
BslI CCNNNNNNNGG 2 cut(s) 46, 169
BsmAI GTCTC 2 cut(s) 88, 129
BsmBI CGTCTC 1 cut(s) 88
BsmFI GGGAC 2 cut(s) 32, 146
BsmI GAATGC 1 cut(s) 342
BsnI GGCC 2 cut(s) 96, 181
Bso31I GGTCTC 1 cut(s) 129
Bsp143I GATC 3 cut(s) 78, 317, 351
Bsp1720I GCTNAGC 1 cut(s) 35
BspACI CCGC 2 cut(s) 72, 191
BspANI GGCC 2 cut(s) 96, 181
BspCNI CTCAG 1 cut(s) 98
BspLI GGNNCC 1 cut(s) 51
BspPI GGATC 1 cut(s) 325
BspT107I GGYRCC 1 cut(s) 49
BspTNI GGTCTC 1 cut(s) 129
BsrDI GCAATG 1 cut(s) 97
BsrI ACTGG 1 cut(s) 194
BssECI CCNNGG 1 cut(s) 324
BssMI GATC 3 cut(s) 78, 317, 351
Bst2UI CCWGG 1 cut(s) 302
Bst4CI ACNGT 1 cut(s) 107
BstDEI CTNAG 3 cut(s) 35, 85, 267
BstF5I GGATG 1 cut(s) 320
BstKTI GATC 3 cut(s) 81, 320, 354
BstMAI GTCTC 2 cut(s) 88, 129
BstMBI GATC 3 cut(s) 78, 317, 351
BstNI CCWGG 1 cut(s) 302
BstSCI CCNGG 1 cut(s) 300
BsuRI GGCC 2 cut(s) 96, 181
BtgZI GCGATG 1 cut(s) 240
BtsCI GGATG 1 cut(s) 320
BtsI GCAGTG 1 cut(s) 74
BtsIMutI CAGTG 1 cut(s) 74
CviAII CATG 1 cut(s) 63
CviJI RGCY 7 cut(s) 39, 96, 173, 181, 266, 305, 310
CviKI_1 RGCY 7 cut(s) 39, 96, 173, 181, 266, 305, 310
DdeI CTNAG 3 cut(s) 35, 85, 267
DpnI GATC 3 cut(s) 80, 319, 353
DpnII GATC 3 cut(s) 78, 317, 351
EaeI YGGCCR 1 cut(s) 94
EciI GGCGGA 1 cut(s) 180
Eco147I AGGCCT 1 cut(s) 181
Eco31I GGTCTC 1 cut(s) 129
Eco57I CTGAAG 1 cut(s) 39
EcoRII CCWGG 1 cut(s) 300
Esp3I CGTCTC 1 cut(s) 88
FaeI CATG 1 cut(s) 66
FaiI YATR 2 cut(s) 64, 117
FaqI GGGAC 2 cut(s) 32, 146
FatI CATG 1 cut(s) 62
FokI GGATG 1 cut(s) 307
FspBI CTAG 2 cut(s) 306, 348
HaeIII GGCC 2 cut(s) 96, 181
Hin1II CATG 1 cut(s) 66
HinfI GANTC 2 cut(s) 6, 159
HphI GGTGA 1 cut(s) 152
Hpy188I TCNGA 1 cut(s) 325
Hpy188III TCNNGA 3 cut(s) 10, 57, 256
HpyAV CCTTC 3 cut(s) 7, 63, 131
HpyCH4III ACNGT 1 cut(s) 107
HpyCH4IV ACGT 1 cut(s) 132
HpyCH4V TGCA 2 cut(s) 206, 340
HpyF3I CTNAG 3 cut(s) 35, 85, 267
HpySE526I ACGT 1 cut(s) 132
Hsp92II CATG 1 cut(s) 66
Kzo9I GATC 3 cut(s) 78, 317, 351
LmnI GCTCC 1 cut(s) 59
LpnPI CCDG 7 cut(s) 42, 72, 207, 241, 287, 314, 340
MaeI CTAG 2 cut(s) 306, 348
MaeII ACGT 1 cut(s) 132
MalI GATC 3 cut(s) 80, 319, 353
MboI GATC 3 cut(s) 78, 317, 351
MboII GAAGA 1 cut(s) 271
MlsI TGGCCA 1 cut(s) 96
MluNI TGGCCA 1 cut(s) 96
MlyI GAGTC 1 cut(s) 168
MnlI CCTC 5 cut(s) 40, 136, 198, 229, 319
Mox20I TGGCCA 1 cut(s) 96
MscI TGGCCA 1 cut(s) 96
MslI CAYNNNNRTG 1 cut(s) 67
Msp20I TGGCCA 1 cut(s) 96
MspR9I CCNGG 1 cut(s) 302
Mva1269I GAATGC 1 cut(s) 342
MvaI CCWGG 1 cut(s) 302
NdeII GATC 3 cut(s) 78, 317, 351
NlaIII CATG 1 cut(s) 66
NlaIV GGNNCC 1 cut(s) 51
PceI AGGCCT 1 cut(s) 181
PctI GAATGC 1 cut(s) 342
PfeI GAWTC 1 cut(s) 6
PleI GAGTC 1 cut(s) 167
PpsI GAGTC 1 cut(s) 167
Psp6I CCWGG 1 cut(s) 300
PspGI CCWGG 1 cut(s) 300
PspN4I GGNNCC 1 cut(s) 51
RseI CAYNNNNRTG 1 cut(s) 67
Sau3AI GATC 3 cut(s) 78, 317, 351
SchI GAGTC 1 cut(s) 168
ScrFI CCNGG 1 cut(s) 302
SetI ASST 5 cut(s) 51, 135, 142, 240, 303
SmiMI CAYNNNNRTG 1 cut(s) 67
SseBI AGGCCT 1 cut(s) 181
SsiI CCGC 2 cut(s) 72, 191
SspMI CTAG 2 cut(s) 306, 348
StuI AGGCCT 1 cut(s) 181
StyD4I CCNGG 1 cut(s) 300
TaaI ACNGT 1 cut(s) 107
TaiI ACGT 1 cut(s) 135
TfiI GAWTC 1 cut(s) 6
TscAI CASTG 1 cut(s) 74
TspDTI ATGAA 1 cut(s) 303
TspRI CASTG 1 cut(s) 74
XspI CTAG 2 cut(s) 306, 348
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.