MD15G1119500.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0003723
Physical Location & Seq
Reverse (-)
8596788 .. 8597809
1022 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1119500.v1.1.491

Sequence Viewer

Length: 399 bp
ATGCTTTCTAACTTTGTTTGGTCTATGGATATTTGGTTGGATTTGTTTGCCACTGCTATTTGGTCTGTTGGTCTCCATCATCTGCAATTAGTTTTCTTGAAGACTCCAGTTGAGGGCATATTTTTTGTATGTGGTGGAGTTCGTTGTATGTCCAACTTTGGTATGGTGTGCTTGATCTTTTGTCGAATTTGGCCAAGGTGGAGATTGTTGGATAGTGGCCAAATTAGTGGTCAAGTTTCGGCCGAATGTGGGAGAAGGATGGGGGGAGCTGCAAATGAGAGAAACCAGGGAGAGCATTCGGCTCTCCCATTTGAATATGAGCTGCTCCTTCCCACCATTTGTAATAATCTCATTTTGTTAGTAATCACTCAATCAAATATGTTGGTGCTACTTGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

133

Amino Acids

14.89

Weight (kDa)

6.25

Isoelectric Point (pI)

38.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 3 cut(s) 191, 217, 240
AcsI RAATTY 1 cut(s) 186
AfiI CCNNNNNNNGG 2 cut(s) 113, 249
AgsI TTSAA 2 cut(s) 100, 314
AjnI CCWGG 1 cut(s) 285
AluBI AGCT 2 cut(s) 269, 322
AluI AGCT 2 cut(s) 269, 322
Alw26I GTCTC 1 cut(s) 77
AoxI GGCC 3 cut(s) 191, 217, 240
ApeKI GCWGC 2 cut(s) 269, 322
ApoI RAATTY 1 cut(s) 186
ArsI GACNNNNNNTTYG 2 cut(s) 214, 246
BalI TGGCCA 2 cut(s) 193, 219
BbsI GAAGAC 1 cut(s) 107
BbvI GCAGC 2 cut(s) 256, 309
BccI CCATC 2 cut(s) 84, 253
BciT130I CCWGG 1 cut(s) 287
BcoDI GTCTC 1 cut(s) 77
BisI GCNGC 2 cut(s) 270, 323
BlsI GCNGC 2 cut(s) 271, 324
Bme1390I CCNGG 1 cut(s) 287
BmrFI CCNGG 1 cut(s) 287
BpiI GAAGAC 1 cut(s) 107
BpmI CTGGAG 1 cut(s) 90
BsaI GGTCTC 1 cut(s) 77
BsaJI CCNNGG 2 cut(s) 194, 286
Bsc4I CCNNNNNNNGG 2 cut(s) 113, 249
Bse1I ACTGG 1 cut(s) 107
BseBI CCWGG 1 cut(s) 287
BseDI CCNNGG 2 cut(s) 194, 286
BseGI GGATG 1 cut(s) 264
BseLI CCNNNNNNNGG 2 cut(s) 113, 249
BseNI ACTGG 1 cut(s) 107
BseX3I CGGCCG 1 cut(s) 240
BseXI GCAGC 2 cut(s) 256, 309
Bsh1285I CGRYCG 1 cut(s) 243
BshFI GGCC 3 cut(s) 193, 219, 242
BsiEI CGRYCG 1 cut(s) 243
BslI CCNNNNNNNGG 2 cut(s) 113, 249
BsmAI GTCTC 1 cut(s) 77
BsmI GAATGC 1 cut(s) 295
BsnI GGCC 3 cut(s) 193, 219, 242
Bso31I GGTCTC 1 cut(s) 77
Bsp143I GATC 1 cut(s) 174
BspANI GGCC 3 cut(s) 193, 219, 242
BspTNI GGTCTC 1 cut(s) 77
BsrI ACTGG 1 cut(s) 107
BssECI CCNNGG 2 cut(s) 194, 286
BssMI GATC 1 cut(s) 174
BssT1I CCWWGG 1 cut(s) 194
Bst2UI CCWGG 1 cut(s) 287
BstF5I GGATG 1 cut(s) 264
BstKTI GATC 1 cut(s) 177
BstMAI GTCTC 1 cut(s) 77
BstMBI GATC 1 cut(s) 174
BstMCI CGRYCG 1 cut(s) 243
BstNI CCWGG 1 cut(s) 287
BstSCI CCNGG 1 cut(s) 285
BstV1I GCAGC 2 cut(s) 256, 309
BstV2I GAAGAC 1 cut(s) 107
BstXI CCANNNNNNTGG 1 cut(s) 227
BstZI CGGCCG 1 cut(s) 240
BsuRI GGCC 3 cut(s) 193, 219, 242
BtsCI GGATG 1 cut(s) 264
BtsI GCAGTG 1 cut(s) 51
BtsIMutI CAGTG 1 cut(s) 51
CviJI RGCY 6 cut(s) 193, 219, 242, 269, 302, 322
CviKI_1 RGCY 6 cut(s) 193, 219, 242, 269, 302, 322
DpnI GATC 1 cut(s) 176
DpnII GATC 1 cut(s) 174
EaeI YGGCCR 3 cut(s) 191, 217, 240
EagI CGGCCG 1 cut(s) 240
EclXI CGGCCG 1 cut(s) 240
Eco130I CCWWGG 1 cut(s) 194
Eco31I GGTCTC 1 cut(s) 77
Eco52I CGGCCG 1 cut(s) 240
EcoRII CCWGG 1 cut(s) 285
EcoT14I CCWWGG 1 cut(s) 194
ErhI CCWWGG 1 cut(s) 194
FaiI YATR 7 cut(s) 26, 119, 130, 149, 164, 318, 380
Fnu4HI GCNGC 2 cut(s) 270, 323
FokI GGATG 1 cut(s) 271
Fsp4HI GCNGC 2 cut(s) 270, 323
GluI GCNGC 2 cut(s) 270, 323
GsuI CTGGAG 1 cut(s) 90
HaeIII GGCC 3 cut(s) 193, 219, 242
HinfI GANTC 1 cut(s) 103
Hpy188III TCNNGA 1 cut(s) 97
HpyAV CCTTC 2 cut(s) 249, 338
HpyCH4V TGCA 2 cut(s) 85, 272
Kzo9I GATC 1 cut(s) 174
LmnI GCTCC 2 cut(s) 266, 330
LpnPI CCDG 3 cut(s) 120, 272, 299
Lsp1109I GCAGC 2 cut(s) 256, 309
MalI GATC 1 cut(s) 176
MboI GATC 1 cut(s) 174
MboII GAAGA 1 cut(s) 112
MlsI TGGCCA 2 cut(s) 193, 219
MluCI AATT 3 cut(s) 86, 186, 222
MluNI TGGCCA 2 cut(s) 193, 219
MlyI GAGTC 1 cut(s) 97
MmeI TCCRAC 3 cut(s) 18, 177, 189
MnlI CCTC 1 cut(s) 106
Mox20I TGGCCA 2 cut(s) 193, 219
MscI TGGCCA 2 cut(s) 193, 219
Msp20I TGGCCA 2 cut(s) 193, 219
MspR9I CCNGG 1 cut(s) 287
Mva1269I GAATGC 1 cut(s) 295
MvaI CCWGG 1 cut(s) 287
NdeII GATC 1 cut(s) 174
PctI GAATGC 1 cut(s) 295
PkrI GCNGC 2 cut(s) 271, 324
PleI GAGTC 1 cut(s) 97
PpsI GAGTC 1 cut(s) 97
Psp6I CCWGG 1 cut(s) 285
PspGI CCWGG 1 cut(s) 285
SatI GCNGC 2 cut(s) 270, 323
Sau3AI GATC 1 cut(s) 174
SchI GAGTC 1 cut(s) 97
ScrFI CCNGG 1 cut(s) 287
SetI ASST 3 cut(s) 200, 271, 324
SgeI CNNG 7 cut(s) 109, 119, 184, 207, 245, 298, 299
Sse9I AATT 3 cut(s) 86, 186, 222
StyD4I CCNGG 1 cut(s) 285
StyI CCWWGG 1 cut(s) 194
TaqI TCGA 1 cut(s) 184
TasI AATT 3 cut(s) 86, 186, 222
TscAI CASTG 1 cut(s) 58
TseI GCWGC 2 cut(s) 269, 322
TspRI CASTG 1 cut(s) 58
XapI RAATTY 1 cut(s) 186
XcmI CCANNNNNNNNNTGG 1 cut(s) 160
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.