Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0003723

Physical Location & Seq

Genomic Coordinates Reverse (-)

18988892 .. 18993917

Gene Structure 5026 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00233130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1389 bp

ATGAGATTCAAGAAAGGGAGCAAGGTGGAAGTACTAAACGAAAAGGAGGTGCCTTCAGGAGCATGGCAGTGCGCTGTGATTATATCAGGCAATGGACACACTTACAGTGTTAGGTATGATTGGTCTCCTAACTGGGAAGGTCAAGCAGTTATTGAGAGAGTCCCACGGAAGGCTATTAGGCCTTGTCCTCCGCCTGTTCAAGGTGCAGATTGTTGGGCAGTCGGTGATGTTGTTGAGGTCTTTGATGTTGGTTTCTGGAAGATGGCTAACATAGCGAAGGTTTTTGATGAAAACTACTACTTGGCTAGGCTACTTGGATCATTTGAGGAGTTTAGAATCCACAAATCTAGGATCAGGGTGCGTCAAGTTTTGAAAGATGAGGAATGGATTGTGATGGGAAAGGGTCTGGGATCAGCTTACCACAATCATACGAGTTCTCCAGTCTCACAAATGAATCTAAGAATGAAGCTGCCCAGTGGAAATGATTGTTTACCTCCTCCGGAAAACAACAGTTGTGAGGATTCCCATATTGTCTACTCGGCATCATTAAAGAGACCTTCTCAATGTTGCTCTCTTTATACCGAAGCATATCCCCGAAAGATAAGAGCTATTGAGAAAGAATCCGGGCGGCAACAAGTTTTCTCTAGGTCGCCATCTTCCTTGCTTGAGAAGGTAGATGCTGTTGCTTACCCAAGAGAAAATCTGGCTGAAAAATATGTGCACGCTTCCTTTATTTGCCCTTCCACTCAATATTATGAAAAGGAGAAGGGAATTTTATATGGTGGCAATTCATGTTTTGAAAGAAGCTCGGATGGTGTTTTTGATAGTGATGCATGCTCTATTGAATCTGTTGGTAGTTGTAGTATTATTAGTAACAGTTCAGATAAGTTGTCCGGGTATAATCTAGCAGGTCACAGTGAAGATGAAGATACCCATGCAGACTCTTTTTCTGGTGGCGCTGATGTGCAAGAATTTAATTCCTTTCCTCTGAAAGGGGATGTAACAGCAAGAGACTCTAGGTCGGATTTGCATGCTTATCGCCGTACTCTGATGTTAATGCATGCTTCAGGTTCTTTAAGTTGGGAACAAGAAGATTTATTGACAAACCTCCGTATGTCCTTACACATTTCCAATGATGAACATTTGATGGAAGTAAGGAACTTAATTTCTGCTGGAACAAATTTTTATGTTCACTATGGCCTTTCTTTTCTTGTTATGCTTATCTTAGTTCCGGGTCTGCCATGGGCCATGGTTGGGAGGCTTGCCATGCCTTGCTTCCAAAGTTCTAAAGATGGTGGTGGGGTTTTCCATCCTAGTTCTTACATGTGGTTCAGTTTGGGTCTGCTGGGAATTGTTGACACATCTTGTGCCAAAGCAGAAGAGAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Agenet ENT

Protein Analysis

462

Amino Acids

51.53

Weight (kDa)

5.9

Isoelectric Point (pI)

52.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Agenet	PF05641	6 - 64	1.9e-16	Agenet domain
ENT	PF03735	343 - 387	9.2e-08	ENT domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003723)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25590 AT4G32440 AT4G32440 AT4G32440
fragaria_vesca	FvH4_2g29660 FvH4_2g29660 FvH4_2g29660
malus_domestica	MD08G1144800.v1.1 MD15G1119500.v1.1
prunus_persica	Prupe.1G473100_v2.0.a1 Prupe.1G473100_v2.0.a1 Prupe.1G473100_v2.0.a1 Prupe.1G473100_v2.0.a1
pyrus_communis	pycom08g12210 pycom15g10850
rosa_chinensis	RchiOBHm_Chr6g0298631 RchiOBHm_Chr7g0226201
rosa_laevigata	RLG00000001759
rosa_multiflora	Rmu_co8115666.1_g000001 Rmu_sc0001350.1_g000005 Rmu_sc0034903.1_g000002
rosa_roxburghii	Rroxscaffold_3G00233130 Rroxscaffold_7G00169470
rosa_rugosa	Rorug07G0235600 Rorug07G0235700
rosa_samantha	Rh6AG393200 Rh6BG401000 Rh6DG393600 Rh7AG382500 Rh7BG369600 Rh7CG402000 Rh7DG380800
rosa_wichuraiana	Rw6G034380 Rw7G032050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	899
AccB1I	GGYRCC	1 cut(s)	49
AccI	GTMKAC	1 cut(s)	534
AccIII	TCCGGA	1 cut(s)	499
AciI	CCGC	2 cut(s)	191, 628
AclWI	GGATC	3 cut(s)	325, 359, 418
AcsI	RAATTY	3 cut(s)	771, 971, 1180
AcuI	CTGAAG	2 cut(s)	39, 1050
AfaI	GTAC	2 cut(s)	33, 1045
AfiI	CCNNNNNNNGG	4 cut(s)	169, 200, 992, 1254
AflIII	ACRYGT	1 cut(s)	1323
AgsI	TTSAA	5 cut(s)	10, 200, 373, 800, 845
AhdI	GACNNNNNGTC	1 cut(s)	1018
AluBI	AGCT	4 cut(s)	416, 469, 608, 807
AluI	AGCT	4 cut(s)	416, 469, 608, 807
Alw21I	GWGCWC	1 cut(s)	723
Alw26I	GTCTC	4 cut(s)	129, 448, 547, 1005
Alw44I	GTGCAC	1 cut(s)	719
AlwI	GGATC	3 cut(s)	325, 359, 418
Aor13HI	TCCGGA	1 cut(s)	499
AoxI	GGCC	3 cut(s)	179, 1198, 1245
ApaLI	GTGCAC	1 cut(s)	719
ApeKI	GCWGC	1 cut(s)	469
ApoI	RAATTY	3 cut(s)	771, 971, 1180
AspLEI	GCGC	2 cut(s)	74, 959
AspS9I	GGNCC	1 cut(s)	1245
AsuC2I	CCSGG	3 cut(s)	625, 895, 1233
AsuHPI	GGTGA	1 cut(s)	236
BaeGI	GKGCMC	1 cut(s)	723
BanI	GGYRCC	1 cut(s)	49
Bbv12I	GWGCWC	1 cut(s)	723
BbvI	GCAGC	1 cut(s)	456
BccI	CCATC	7 cut(s)	256, 388, 661, 806, 1141, 1286, 1317
BceAI	ACGGC	1 cut(s)	1026
BcgI	CGANNNNNNTGC	2 cut(s)	1019, 1053
BcnI	CCSGG	3 cut(s)	625, 895, 1233
BcoDI	GTCTC	4 cut(s)	129, 448, 547, 1005
BfaI	CTAG	6 cut(s)	306, 348, 645, 905, 1017, 1314
BfoI	RGCGCY	1 cut(s)	960
BfuAI	ACCTGC	1 cut(s)	899
BisI	GCNGC	2 cut(s)	470, 629
BlsI	GCNGC	2 cut(s)	471, 630
BmcAI	AGTACT	1 cut(s)	33
Bme1390I	CCNGG	3 cut(s)	625, 895, 1233
BmeRI	GACNNNNNGTC	1 cut(s)	1018
BmgT120I	GGNCC	1 cut(s)	1245
BmiI	GGNNCC	1 cut(s)	51
BmrFI	CCNGG	3 cut(s)	625, 895, 1233
BmrI	ACTGGG	2 cut(s)	142, 468
BmsI	GCATC	3 cut(s)	551, 667, 820
BmuI	ACTGGG	2 cut(s)	142, 468
BplI	GAGNNNNNCTC	2 cut(s)	544, 576
BpmI	CTGGAG	1 cut(s)	423
BpuEI	CTTGAG	1 cut(s)	686
BpuMI	CCSGG	3 cut(s)	625, 895, 1233
BsaI	GGTCTC	2 cut(s)	129, 547
BsaJI	CCNNGG	3 cut(s)	164, 1241, 1248
BsaWI	WCCGGW	1 cut(s)	499
BsaXI	ACNNNNNCTCC	2 cut(s)	421, 451
Bsc4I	CCNNNNNNNGG	4 cut(s)	169, 200, 992, 1254
Bse1I	ACTGG	3 cut(s)	137, 440, 474
Bse3DI	GCAATG	1 cut(s)	97
BseAI	TCCGGA	1 cut(s)	499
BseDI	CCNNGG	3 cut(s)	164, 1241, 1248
BseGI	GGATG	3 cut(s)	817, 1003, 1309
BseLI	CCNNNNNNNGG	4 cut(s)	169, 200, 992, 1254
BseMI	GCAATG	1 cut(s)	97
BseNI	ACTGG	3 cut(s)	137, 440, 474
BseRI	GAGGAG	2 cut(s)	341, 486
BseSI	GKGCMC	1 cut(s)	723
BseXI	GCAGC	1 cut(s)	456
BseYI	CCCAGC	1 cut(s)	1345
BsgI	GTGCAG	1 cut(s)	225
BshFI	GGCC	3 cut(s)	181, 1200, 1247
BshNI	GGYRCC	1 cut(s)	49
BsiHKAI	GWGCWC	1 cut(s)	723
BsiSI	CCGG	4 cut(s)	500, 624, 894, 1232
BslFI	GGGAC	1 cut(s)	146
BslI	CCNNNNNNNGG	4 cut(s)	169, 200, 992, 1254
BsmAI	GTCTC	4 cut(s)	129, 448, 547, 1005
BsmFI	GGGAC	1 cut(s)	146
BsnI	GGCC	3 cut(s)	181, 1200, 1247
Bso31I	GGTCTC	2 cut(s)	129, 547
Bsp1286I	GDGCHC	1 cut(s)	723
Bsp13I	TCCGGA	1 cut(s)	499
Bsp143I	GATC	3 cut(s)	317, 351, 410
Bsp19I	CCATGG	2 cut(s)	1241, 1248
BspACI	CCGC	2 cut(s)	191, 628
BspANI	GGCC	3 cut(s)	181, 1200, 1247
BspEI	TCCGGA	1 cut(s)	499
BspLI	GGNNCC	1 cut(s)	51
BspMI	ACCTGC	1 cut(s)	899
BspPI	GGATC	3 cut(s)	325, 359, 418
BspT107I	GGYRCC	1 cut(s)	49
BspTNI	GGTCTC	2 cut(s)	129, 547
BsrDI	GCAATG	1 cut(s)	97
BsrI	ACTGG	3 cut(s)	137, 440, 474
BssECI	CCNNGG	3 cut(s)	164, 1241, 1248
BssMI	GATC	3 cut(s)	317, 351, 410
BssT1I	CCWWGG	2 cut(s)	1241, 1248
Bst4CI	ACNGT	4 cut(s)	107, 512, 878, 917
Bst6I	CTCTTC	1 cut(s)	1374
BstC8I	GCNNGC	5 cut(s)	723, 835, 1032, 1062, 1263
BstDEI	CTNAG	2 cut(s)	458, 1225
BstDSI	CCRYGG	3 cut(s)	164, 1241, 1248
BstENI	CCTNNNNNAGG	2 cut(s)	198, 990
BstF5I	GGATG	3 cut(s)	817, 1003, 1309
BstH2I	RGCGCY	1 cut(s)	960
BstHHI	GCGC	2 cut(s)	74, 959
BstKTI	GATC	3 cut(s)	320, 354, 413
BstMAI	GTCTC	4 cut(s)	129, 448, 547, 1005
BstMBI	GATC	3 cut(s)	317, 351, 410
BstMWI	GCNNNNNNNGC	2 cut(s)	272, 1267
BstNSI	RCATGY	4 cut(s)	837, 1034, 1064, 1327
BstSCI	CCNGG	3 cut(s)	623, 893, 1231
BstSLI	GKGCMC	1 cut(s)	723
BstV1I	GCAGC	1 cut(s)	456
BsuRI	GGCC	3 cut(s)	181, 1200, 1247
BtgI	CCRYGG	3 cut(s)	164, 1241, 1248
BtsCI	GGATG	3 cut(s)	817, 1003, 1309
BtsI	GCAGTG	1 cut(s)	74
BtsIMutI	CAGTG	4 cut(s)	74, 112, 481, 922
BveI	ACCTGC	1 cut(s)	899
Cac8I	GCNNGC	5 cut(s)	723, 835, 1032, 1062, 1263
CfoI	GCGC	2 cut(s)	74, 959
Cfr13I	GGNCC	1 cut(s)	1245
CseI	GACGC	1 cut(s)	350
Csp6I	GTAC	2 cut(s)	32, 1044
CviQI	GTAC	2 cut(s)	32, 1044
DdeI	CTNAG	2 cut(s)	458, 1225
DpnI	GATC	3 cut(s)	319, 353, 412
DpnII	GATC	3 cut(s)	317, 351, 410
DriI	GACNNNNNGTC	1 cut(s)	1018
Eam1104I	CTCTTC	1 cut(s)	1374
Eam1105I	GACNNNNNGTC	1 cut(s)	1018
EarI	CTCTTC	1 cut(s)	1374
EciI	GGCGGA	1 cut(s)	180
Eco130I	CCWWGG	2 cut(s)	1241, 1248
Eco147I	AGGCCT	1 cut(s)	181
Eco31I	GGTCTC	2 cut(s)	129, 547
Eco57I	CTGAAG	2 cut(s)	39, 1050
EcoNI	CCTNNNNNAGG	2 cut(s)	198, 990
EcoT14I	CCWWGG	2 cut(s)	1241, 1248
EcoT22I	ATGCAT	2 cut(s)	835, 1062
ErhI	CCWWGG	2 cut(s)	1241, 1248
FaqI	GGGAC	1 cut(s)	146
FblI	GTMKAC	1 cut(s)	534
Fnu4HI	GCNGC	2 cut(s)	470, 629
FokI	GGATG	3 cut(s)	824, 1010, 1296
Fsp4HI	GCNGC	2 cut(s)	470, 629
FspBI	CTAG	6 cut(s)	306, 348, 645, 905, 1017, 1314
GlaI	GCGC	2 cut(s)	73, 958
GluI	GCNGC	2 cut(s)	470, 629
GsaI	CCCAGC	1 cut(s)	1349
GsuI	CTGGAG	1 cut(s)	423
HaeII	RGCGCY	1 cut(s)	960
HaeIII	GGCC	3 cut(s)	181, 1200, 1247
HapII	CCGG	4 cut(s)	500, 624, 894, 1232
HgaI	GACGC	1 cut(s)	350
HhaI	GCGC	2 cut(s)	74, 959
Hin6I	GCGC	2 cut(s)	72, 957
HinP1I	GCGC	2 cut(s)	72, 957
HincII	GTYRAC	1 cut(s)	1357
HindII	GTYRAC	1 cut(s)	1357
HinfI	GANTC	9 cut(s)	6, 159, 336, 454, 521, 620, 845, 941, 1013
HpaII	CCGG	4 cut(s)	500, 624, 894, 1232
HphI	GGTGA	1 cut(s)	236
Hpy166II	GTNNAC	5 cut(s)	491, 535, 721, 1192, 1357
Hpy188I	TCNGA	5 cut(s)	811, 883, 990, 1024, 1050
Hpy188III	TCNNGA	4 cut(s)	10, 57, 256, 500
Hpy8I	GTNNAC	5 cut(s)	491, 535, 721, 1192, 1357
HpyAV	CCTTC	8 cut(s)	63, 131, 163, 271, 567, 664, 750, 760
HpyCH4III	ACNGT	4 cut(s)	107, 512, 878, 917
HpyCH4V	TGCA	7 cut(s)	206, 721, 833, 938, 967, 1030, 1060
HpyF10VI	GCNNNNNNNGC	2 cut(s)	272, 1267
HpyF3I	CTNAG	2 cut(s)	458, 1225
HspAI	GCGC	2 cut(s)	72, 957
Kpn2I	TCCGGA	1 cut(s)	499
Kzo9I	GATC	3 cut(s)	317, 351, 410
LmnI	GCTCC	2 cut(s)	18, 59
Lsp1109I	GCAGC	1 cut(s)	456
LweI	GCATC	3 cut(s)	551, 667, 820
MaeI	CTAG	6 cut(s)	306, 348, 645, 905, 1017, 1314
MaeIII	GTNAC	3 cut(s)	872, 911, 1000
MalI	GATC	3 cut(s)	319, 353, 412
MboI	GATC	3 cut(s)	317, 351, 410
MboII	GAAGA	5 cut(s)	271, 648, 932, 938, 1103
MhlI	GDGCHC	1 cut(s)	723
MluCI	AATT	7 cut(s)	771, 787, 971, 976, 1164, 1180, 1350
MlyI	GAGTC	3 cut(s)	168, 935, 1007
MmeI	TCCRAC	1 cut(s)	1002
Mph1103I	ATGCAT	2 cut(s)	835, 1062
MroI	TCCGGA	1 cut(s)	499
MseI	TTAA	5 cut(s)	548, 975, 1055, 1076, 1163
MslI	CAYNNNNRTG	1 cut(s)	67
MspI	CCGG	4 cut(s)	500, 624, 894, 1232
MspR9I	CCNGG	3 cut(s)	625, 895, 1233
MwoI	GCNNNNNNNGC	2 cut(s)	272, 1267
NciI	CCSGG	3 cut(s)	625, 895, 1233
NcoI	CCATGG	2 cut(s)	1241, 1248
NdeII	GATC	3 cut(s)	317, 351, 410
NlaIV	GGNNCC	1 cut(s)	51
NmeAIII	GCCGAG	1 cut(s)	518
NmuCI	GTSAC	1 cut(s)	911
NsiI	ATGCAT	2 cut(s)	835, 1062
NspI	RCATGY	4 cut(s)	837, 1034, 1064, 1327
PaeI	GCATGC	3 cut(s)	837, 1034, 1064
PceI	AGGCCT	1 cut(s)	181
PciI	ACATGT	1 cut(s)	1323
PfeI	GAWTC	6 cut(s)	6, 336, 454, 521, 620, 845
PkrI	GCNGC	2 cut(s)	471, 630
PleI	GAGTC	3 cut(s)	167, 935, 1007
PpsI	GAGTC	3 cut(s)	167, 935, 1007
PscI	ACATGT	1 cut(s)	1323
PspFI	CCCAGC	1 cut(s)	1345
PspN4I	GGNNCC	1 cut(s)	51
PspPI	GGNCC	1 cut(s)	1245
RsaI	GTAC	2 cut(s)	33, 1045
RsaNI	GTAC	2 cut(s)	32, 1044
RseI	CAYNNNNRTG	1 cut(s)	67
SaqAI	TTAA	5 cut(s)	548, 975, 1055, 1076, 1163
SatI	GCNGC	2 cut(s)	470, 629
Sau3AI	GATC	3 cut(s)	317, 351, 410
Sau96I	GGNCC	1 cut(s)	1245
ScaI	AGTACT	1 cut(s)	33
SchI	GAGTC	3 cut(s)	168, 935, 1007
ScrFI	CCNGG	3 cut(s)	625, 895, 1233
SduI	GDGCHC	1 cut(s)	723
SfaNI	GCATC	3 cut(s)	551, 667, 820
SmiMI	CAYNNNNRTG	1 cut(s)	67
SmlI	CTYRAG	1 cut(s)	665
SmoI	CTYRAG	1 cut(s)	665
SphI	GCATGC	3 cut(s)	837, 1034, 1064
Sse9I	AATT	7 cut(s)	771, 787, 971, 976, 1164, 1180, 1350
SseBI	AGGCCT	1 cut(s)	181
SsiI	CCGC	2 cut(s)	191, 628
SspI	AATATT	1 cut(s)	752
SspMI	CTAG	6 cut(s)	306, 348, 645, 905, 1017, 1314
StuI	AGGCCT	1 cut(s)	181
StyD4I	CCNGG	3 cut(s)	623, 893, 1231
StyI	CCWWGG	2 cut(s)	1241, 1248
TaaI	ACNGT	4 cut(s)	107, 512, 878, 917
TasI	AATT	7 cut(s)	771, 787, 971, 976, 1164, 1180, 1350
TatI	WGTACW	1 cut(s)	31
TauI	GCSGC	1 cut(s)	631
TfiI	GAWTC	6 cut(s)	6, 336, 454, 521, 620, 845
Tru1I	TTAA	5 cut(s)	548, 975, 1055, 1076, 1163
Tru9I	TTAA	5 cut(s)	548, 975, 1055, 1076, 1163
TscAI	CASTG	4 cut(s)	74, 112, 481, 922
TseFI	GTSAC	1 cut(s)	911
TseI	GCWGC	1 cut(s)	469
Tsp45I	GTSAC	1 cut(s)	911
TspDTI	ATGAA	7 cut(s)	303, 467, 479, 771, 780, 939, 1152
TspGWI	ACGGA	2 cut(s)	181, 1100
TspRI	CASTG	4 cut(s)	74, 112, 481, 922
VneI	GTGCAC	1 cut(s)	719
XagI	CCTNNNNNAGG	2 cut(s)	198, 990
XapI	RAATTY	3 cut(s)	771, 971, 1180
XceI	RCATGY	4 cut(s)	837, 1034, 1064, 1327
XmiI	GTMKAC	1 cut(s)	534
XspI	CTAG	6 cut(s)	306, 348, 645, 905, 1017, 1314
ZrmI	AGTACT	1 cut(s)	33
Zsp2I	ATGCAT	2 cut(s)	835, 1062

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.