Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0003723

Physical Location & Seq

Genomic Coordinates Forward (+)

62815790 .. 62820781

Gene Structure 4992 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG401000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1152 bp

ATGAGATTCAAGAAGGGGGACAAAGTGGAAGTGCTAAGCCGCCAAAAGGAGGTGCCTTCAGGAGCATGGCAGTGCGGTGTGATCGTCTCAGGCAATGGCCACACTTACGGTGTTAGATATGATTGGTCTCCTAACGTGGAAGGTGAGGCAATAGTGGAGAGAGTCCCAAGAAAGGCTATTAGGCCTTGCCCTCCGCCAGTTCAAAGTGCAGATAGTTGGGGGGTTGGCAATGTTGTTGAGGTCTTTGATGTCGGTTTCTGGAAGATGGCTAAGGTAGTGAAGGTTTTTGATGAAAACTATTACCTGGCTAGGCTACTTGGATCATCCAAGGAGTTTCGAATGCACAAATCTAGGATCAGGGTGCGTCAATTGTTGAAAGATGACAAATGGATTGTGATTGGAAAGGTAAATTTAAGAATAAAGCTGCCTTACAGAAATGAATATTCACCATCTCTAGAAAACAGCAGTTGTCAGGAATCCTATATTGTCTCATCTACATCATTAAAGAGAGCTTGTCCGTACACTGAAGCATATCCCCGGAAGATGAGAGCTATGGAGAAAGAGTGTGAGCACCAACAAGTTTTTTCTAGGTCCCCATCTTCACTGCTCAAAAAGGTAGATGTTGTTGCTTACCCGGGGGAAAAGCTGGGTGAAAAATACATGCACGCTTCCTTTCTTTGTCCTACAACTCGATATTTTGAAAAGGAGAACAGACATTTGAATGGTGCTAATTCATGTTTTGAAAGAAGCTCGGAAGTTAGTGATTTTGATAGTGATGCATGCTCTATTGAGTCTGTTGGTAGTTGCAGTGTTAATGGTAACAATTCAAGTAAGACATCTGGTTATGATTTAGCAGGTAATAGTGAAGAAGCAGATACCCTTTGTAGCGATGAAGACTCTTTTTCTAGTGGTGCAGATCTGCAAGAAAATGTTTCCCTTCCTCTGAAACATGATATAGCCGCAACAATTCATAGGTTAGAGTTGCATGCTTACCGCCGGACTCTGATGGTAATGCATGCTTTGGGGTCCTTAAGTTGGGAACAAGAAGATTTATTGACAACACTCCGTATGTCTTTACACATTTCGAATGATGAACATTTGATGGAAGTAAGGAACTTAATTTCTGCTGGAACAAATCTTTATGTTAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Agenet ENT

Protein Analysis

383

Amino Acids

43.29

Weight (kDa)

7.15

Isoelectric Point (pI)

49.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Agenet	PF05641	6 - 65	3.5e-15	Agenet domain
ENT	PF03735	321 - 372	1.6e-11	ENT domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003723)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25590 AT4G32440 AT4G32440 AT4G32440
fragaria_vesca	FvH4_2g29660 FvH4_2g29660 FvH4_2g29660
malus_domestica	MD08G1144800.v1.1 MD15G1119500.v1.1
prunus_persica	Prupe.1G473100_v2.0.a1 Prupe.1G473100_v2.0.a1 Prupe.1G473100_v2.0.a1 Prupe.1G473100_v2.0.a1
pyrus_communis	pycom08g12210 pycom15g10850
rosa_chinensis	RchiOBHm_Chr6g0298631 RchiOBHm_Chr7g0226201
rosa_laevigata	RLG00000001759
rosa_multiflora	Rmu_co8115666.1_g000001 Rmu_sc0001350.1_g000005 Rmu_sc0034903.1_g000002
rosa_roxburghii	Rroxscaffold_3G00233130 Rroxscaffold_7G00169470
rosa_rugosa	Rorug07G0235600 Rorug07G0235700
rosa_samantha	Rh6AG393200 Rh6BG401000 Rh6DG393600 Rh7AG382500 Rh7BG369600 Rh7CG402000 Rh7DG380800
rosa_wichuraiana	Rw6G034380 Rw7G032050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	845
AccB1I	GGYRCC	1 cut(s)	52
AciI	CCGC	5 cut(s)	40, 75, 194, 960, 994
AclWI	GGATC	2 cut(s)	328, 362
AcoI	YGGCCR	1 cut(s)	97
AcsI	RAATTY	1 cut(s)	409
AcuI	CTGAAG	2 cut(s)	42, 546
AfaI	GTAC	1 cut(s)	521
AfiI	CCNNNNNNNGG	4 cut(s)	46, 49, 172, 1035
AflII	CTTAAG	1 cut(s)	1030
AgsI	TTSAA	7 cut(s)	10, 203, 376, 701, 721, 743, 828
AjnI	CCWGG	1 cut(s)	303
AluBI	AGCT	5 cut(s)	424, 512, 551, 646, 750
AluI	AGCT	5 cut(s)	424, 512, 551, 646, 750
Alw21I	GWGCWC	1 cut(s)	573
Alw26I	GTCTC	3 cut(s)	91, 132, 493
AlwI	GGATC	2 cut(s)	328, 362
Ama87I	CYCGRG	1 cut(s)	634
AoxI	GGCC	2 cut(s)	97, 182
ApeKI	GCWGC	1 cut(s)	424
ApoI	RAATTY	1 cut(s)	409
AspS9I	GGNCC	2 cut(s)	591, 1026
AsuC2I	CCSGG	3 cut(s)	538, 635, 636
AsuHPI	GGTGA	3 cut(s)	155, 438, 662
AsuII	TTCGAA	2 cut(s)	337, 1085
AvaI	CYCGRG	1 cut(s)	634
AvaII	GGWCC	2 cut(s)	591, 1026
BalI	TGGCCA	1 cut(s)	99
BanI	GGYRCC	1 cut(s)	52
BbsI	GAAGAC	1 cut(s)	900
Bbv12I	GWGCWC	1 cut(s)	573
BbvI	GCAGC	1 cut(s)	411
BccI	CCATC	5 cut(s)	259, 457, 604, 1000, 1096
BciT130I	CCWGG	1 cut(s)	305
BcnI	CCSGG	3 cut(s)	538, 635, 636
BcoDI	GTCTC	3 cut(s)	91, 132, 493
BfaI	CTAG	5 cut(s)	309, 351, 455, 588, 906
BfrI	CTTAAG	1 cut(s)	1030
BfuAI	ACCTGC	1 cut(s)	845
BglII	AGATCT	1 cut(s)	916
BisI	GCNGC	3 cut(s)	40, 425, 960
BlpI	GCTNAGC	1 cut(s)	35
BlsI	GCNGC	3 cut(s)	41, 426, 961
Bme1390I	CCNGG	4 cut(s)	305, 538, 635, 636
Bme18I	GGWCC	2 cut(s)	591, 1026
BmeT110I	CYCGRG	1 cut(s)	634
BmgT120I	GGNCC	2 cut(s)	591, 1026
BmiI	GGNNCC	3 cut(s)	54, 593, 1027
BmrFI	CCNGG	4 cut(s)	305, 538, 635, 636
BmsI	GCATC	1 cut(s)	766
BpiI	GAAGAC	1 cut(s)	900
Bpu10I	CCTNAGC	1 cut(s)	270
Bpu1102I	GCTNAGC	1 cut(s)	35
Bpu14I	TTCGAA	2 cut(s)	337, 1085
BpuMI	CCSGG	3 cut(s)	538, 635, 636
BsaI	GGTCTC	1 cut(s)	132
BsaJI	CCNNGG	4 cut(s)	327, 536, 634, 635
BsaXI	ACNNNNNCTCC	2 cut(s)	548, 578
Bsc4I	CCNNNNNNNGG	4 cut(s)	46, 49, 172, 1035
Bse1I	ACTGG	1 cut(s)	197
Bse3DI	GCAATG	2 cut(s)	100, 235
BseBI	CCWGG	1 cut(s)	305
BseDI	CCNNGG	4 cut(s)	327, 536, 634, 635
BseGI	GGATG	1 cut(s)	323
BseLI	CCNNNNNNNGG	4 cut(s)	46, 49, 172, 1035
BseMI	GCAATG	2 cut(s)	100, 235
BseMII	CTCAG	1 cut(s)	102
BseNI	ACTGG	1 cut(s)	197
BseXI	GCAGC	1 cut(s)	411
BseYI	CCCAGC	1 cut(s)	646
BsgI	GTGCAG	2 cut(s)	228, 933
BshFI	GGCC	2 cut(s)	99, 184
BshNI	GGYRCC	1 cut(s)	52
BsiHKAI	GWGCWC	1 cut(s)	573
BsiHKCI	CYCGRG	1 cut(s)	634
BsiSI	CCGG	3 cut(s)	538, 635, 997
BslFI	GGGAC	3 cut(s)	32, 149, 577
BslI	CCNNNNNNNGG	4 cut(s)	46, 49, 172, 1035
BsmAI	GTCTC	3 cut(s)	91, 132, 493
BsmBI	CGTCTC	1 cut(s)	91
BsmFI	GGGAC	3 cut(s)	32, 149, 577
BsmI	GAATGC	1 cut(s)	345
BsnI	GGCC	2 cut(s)	99, 184
Bso31I	GGTCTC	1 cut(s)	132
BsoBI	CYCGRG	1 cut(s)	634
Bsp119I	TTCGAA	2 cut(s)	337, 1085
Bsp1286I	GDGCHC	1 cut(s)	573
Bsp143I	GATC	4 cut(s)	81, 320, 354, 916
Bsp1720I	GCTNAGC	1 cut(s)	35
BspACI	CCGC	5 cut(s)	40, 75, 194, 960, 994
BspANI	GGCC	2 cut(s)	99, 184
BspCNI	CTCAG	1 cut(s)	101
BspLI	GGNNCC	3 cut(s)	54, 593, 1027
BspMI	ACCTGC	1 cut(s)	845
BspPI	GGATC	2 cut(s)	328, 362
BspT104I	TTCGAA	2 cut(s)	337, 1085
BspT107I	GGYRCC	1 cut(s)	52
BspTI	CTTAAG	1 cut(s)	1030
BspTNI	GGTCTC	1 cut(s)	132
BsrDI	GCAATG	2 cut(s)	100, 235
BsrI	ACTGG	1 cut(s)	197
BssECI	CCNNGG	4 cut(s)	327, 536, 634, 635
BssMI	GATC	4 cut(s)	81, 320, 354, 916
BssT1I	CCWWGG	1 cut(s)	327
Bst2UI	CCWGG	1 cut(s)	305
Bst4CI	ACNGT	1 cut(s)	110
BstAFI	CTTAAG	1 cut(s)	1030
BstBI	TTCGAA	2 cut(s)	337, 1085
BstC8I	GCNNGC	4 cut(s)	666, 781, 987, 1017
BstDEI	CTNAG	3 cut(s)	35, 88, 270
BstF5I	GGATG	1 cut(s)	323
BstKTI	GATC	4 cut(s)	84, 323, 357, 919
BstMAI	GTCTC	3 cut(s)	91, 132, 493
BstMBI	GATC	4 cut(s)	81, 320, 354, 916
BstNI	CCWGG	1 cut(s)	305
BstNSI	RCATGY	4 cut(s)	664, 783, 989, 1019
BstSCI	CCNGG	4 cut(s)	303, 536, 633, 634
BstV1I	GCAGC	1 cut(s)	411
BstV2I	GAAGAC	1 cut(s)	900
BstX2I	RGATCY	1 cut(s)	916
BstYI	RGATCY	1 cut(s)	916
BsuRI	GGCC	2 cut(s)	99, 184
BtgZI	GCGATG	1 cut(s)	903
BtsCI	GGATG	1 cut(s)	323
BtsI	GCAGTG	3 cut(s)	77, 602, 814
BtsIMutI	CAGTG	4 cut(s)	77, 522, 602, 814
BveI	ACCTGC	1 cut(s)	845
Cac8I	GCNNGC	4 cut(s)	666, 781, 987, 1017
Cfr13I	GGNCC	2 cut(s)	591, 1026
Cfr9I	CCCGGG	1 cut(s)	634
CseI	GACGC	1 cut(s)	353
Csp6I	GTAC	1 cut(s)	520
CviAII	CATG	7 cut(s)	66, 661, 735, 780, 950, 986, 1016
CviQI	GTAC	1 cut(s)	520
DdeI	CTNAG	3 cut(s)	35, 88, 270
DpnI	GATC	4 cut(s)	83, 322, 356, 918
DpnII	GATC	4 cut(s)	81, 320, 354, 916
EaeI	YGGCCR	1 cut(s)	97
EciI	GGCGGA	1 cut(s)	183
Eco130I	CCWWGG	1 cut(s)	327
Eco147I	AGGCCT	1 cut(s)	184
Eco31I	GGTCTC	1 cut(s)	132
Eco47I	GGWCC	2 cut(s)	591, 1026
Eco57I	CTGAAG	2 cut(s)	42, 546
Eco88I	CYCGRG	1 cut(s)	634
EcoO109I	RGGNCCY	2 cut(s)	591, 1026
EcoRII	CCWGG	1 cut(s)	303
EcoT14I	CCWWGG	1 cut(s)	327
EcoT22I	ATGCAT	2 cut(s)	781, 1017
ErhI	CCWWGG	1 cut(s)	327
Esp3I	CGTCTC	1 cut(s)	91
FaeI	CATG	7 cut(s)	69, 664, 738, 783, 953, 989, 1019
FaqI	GGGAC	3 cut(s)	32, 149, 577
FatI	CATG	7 cut(s)	65, 660, 734, 779, 949, 985, 1015
Fnu4HI	GCNGC	3 cut(s)	40, 425, 960
FokI	GGATG	1 cut(s)	310
Fsp4HI	GCNGC	3 cut(s)	40, 425, 960
FspBI	CTAG	5 cut(s)	309, 351, 455, 588, 906
GluI	GCNGC	3 cut(s)	40, 425, 960
GsaI	CCCAGC	1 cut(s)	650
HaeIII	GGCC	2 cut(s)	99, 184
HapII	CCGG	3 cut(s)	538, 635, 997
HgaI	GACGC	1 cut(s)	353
Hin1II	CATG	7 cut(s)	69, 664, 738, 783, 953, 989, 1019
HinfI	GANTC	6 cut(s)	6, 162, 476, 791, 896, 1000
HpaII	CCGG	3 cut(s)	538, 635, 997
HphI	GGTGA	3 cut(s)	155, 438, 662
Hpy166II	GTNNAC	1 cut(s)	522
Hpy188I	TCNGA	3 cut(s)	754, 945, 1005
Hpy188III	TCNNGA	5 cut(s)	10, 60, 259, 455, 473
Hpy8I	GTNNAC	1 cut(s)	522
HpyAV	CCTTC	5 cut(s)	7, 66, 134, 274, 947
HpyCH4III	ACNGT	1 cut(s)	110
HpyCH4IV	ACGT	1 cut(s)	135
HpyCH4V	TGCA	9 cut(s)	209, 343, 664, 779, 807, 914, 922, 985, 1015
HpyF3I	CTNAG	3 cut(s)	35, 88, 270
HpySE526I	ACGT	1 cut(s)	135
Hsp92II	CATG	7 cut(s)	69, 664, 738, 783, 953, 989, 1019
Kzo9I	GATC	4 cut(s)	81, 320, 354, 916
LmnI	GCTCC	1 cut(s)	62
Lsp1109I	GCAGC	1 cut(s)	411
LweI	GCATC	1 cut(s)	766
MaeI	CTAG	5 cut(s)	309, 351, 455, 588, 906
MaeII	ACGT	1 cut(s)	135
MaeIII	GTNAC	1 cut(s)	818
MalI	GATC	4 cut(s)	83, 322, 356, 918
MboI	GATC	4 cut(s)	81, 320, 354, 916
MboII	GAAGA	6 cut(s)	274, 553, 591, 878, 905, 1058
MfeI	CAATTG	1 cut(s)	368
MflI	RGATCY	1 cut(s)	916
MhlI	GDGCHC	1 cut(s)	573
MlsI	TGGCCA	1 cut(s)	99
MluCI	AATT	6 cut(s)	368, 409, 730, 823, 966, 1119
MluNI	TGGCCA	1 cut(s)	99
MlyI	GAGTC	4 cut(s)	171, 800, 890, 994
MnlI	CCTC	5 cut(s)	43, 139, 201, 232, 951
Mox20I	TGGCCA	1 cut(s)	99
Mph1103I	ATGCAT	2 cut(s)	781, 1017
MscI	TGGCCA	1 cut(s)	99
MseI	TTAA	5 cut(s)	413, 503, 813, 1031, 1118
MslI	CAYNNNNRTG	2 cut(s)	70, 720
Msp20I	TGGCCA	1 cut(s)	99
MspCI	CTTAAG	1 cut(s)	1030
MspI	CCGG	3 cut(s)	538, 635, 997
MspR9I	CCNGG	4 cut(s)	305, 538, 635, 636
MunI	CAATTG	1 cut(s)	368
Mva1269I	GAATGC	1 cut(s)	345
MvaI	CCWGG	1 cut(s)	305
NciI	CCSGG	3 cut(s)	538, 635, 636
NdeII	GATC	4 cut(s)	81, 320, 354, 916
NlaIII	CATG	7 cut(s)	69, 664, 738, 783, 953, 989, 1019
NlaIV	GGNNCC	3 cut(s)	54, 593, 1027
NsiI	ATGCAT	2 cut(s)	781, 1017
NspI	RCATGY	4 cut(s)	664, 783, 989, 1019
NspV	TTCGAA	2 cut(s)	337, 1085
PaeI	GCATGC	3 cut(s)	783, 989, 1019
PceI	AGGCCT	1 cut(s)	184
PctI	GAATGC	1 cut(s)	345
PfeI	GAWTC	2 cut(s)	6, 476
PkrI	GCNGC	3 cut(s)	41, 426, 961
PleI	GAGTC	4 cut(s)	170, 799, 890, 994
PpsI	GAGTC	4 cut(s)	170, 799, 890, 994
PpuMI	RGGWCCY	2 cut(s)	591, 1026
Psp5II	RGGWCCY	2 cut(s)	591, 1026
Psp6I	CCWGG	1 cut(s)	303
PspFI	CCCAGC	1 cut(s)	646
PspGI	CCWGG	1 cut(s)	303
PspN4I	GGNNCC	3 cut(s)	54, 593, 1027
PspPI	GGNCC	2 cut(s)	591, 1026
PspPPI	RGGWCCY	2 cut(s)	591, 1026
PsuI	RGATCY	1 cut(s)	916
RsaI	GTAC	1 cut(s)	521
RsaNI	GTAC	1 cut(s)	520
RseI	CAYNNNNRTG	2 cut(s)	70, 720
SaqAI	TTAA	5 cut(s)	413, 503, 813, 1031, 1118
SatI	GCNGC	3 cut(s)	40, 425, 960
Sau3AI	GATC	4 cut(s)	81, 320, 354, 916
Sau96I	GGNCC	2 cut(s)	591, 1026
SchI	GAGTC	4 cut(s)	171, 800, 890, 994
ScrFI	CCNGG	4 cut(s)	305, 538, 635, 636
SduI	GDGCHC	1 cut(s)	573
SfaNI	GCATC	1 cut(s)	766
SfuI	TTCGAA	2 cut(s)	337, 1085
SinI	GGWCC	2 cut(s)	591, 1026
SmaI	CCCGGG	1 cut(s)	636
SmiMI	CAYNNNNRTG	2 cut(s)	70, 720
SmlI	CTYRAG	1 cut(s)	1030
SmoI	CTYRAG	1 cut(s)	1030
SphI	GCATGC	3 cut(s)	783, 989, 1019
Sse9I	AATT	6 cut(s)	368, 409, 730, 823, 966, 1119
SseBI	AGGCCT	1 cut(s)	184
SsiI	CCGC	5 cut(s)	40, 75, 194, 960, 994
SspI	AATATT	1 cut(s)	443
SspMI	CTAG	5 cut(s)	309, 351, 455, 588, 906
StuI	AGGCCT	1 cut(s)	184
StyD4I	CCNGG	4 cut(s)	303, 536, 633, 634
StyI	CCWWGG	1 cut(s)	327
TaaI	ACNGT	1 cut(s)	110
TaiI	ACGT	1 cut(s)	138
TaqI	TCGA	3 cut(s)	337, 691, 1085
TasI	AATT	6 cut(s)	368, 409, 730, 823, 966, 1119
TauI	GCSGC	2 cut(s)	42, 962
TfiI	GAWTC	2 cut(s)	6, 476
Tru1I	TTAA	5 cut(s)	413, 503, 813, 1031, 1118
Tru9I	TTAA	5 cut(s)	413, 503, 813, 1031, 1118
TscAI	CASTG	4 cut(s)	77, 529, 609, 814
TseI	GCWGC	1 cut(s)	424
TspDTI	ATGAA	6 cut(s)	306, 453, 723, 906, 959, 1107
TspGWI	ACGGA	2 cut(s)	507, 1055
TspMI	CCCGGG	1 cut(s)	634
TspRI	CASTG	4 cut(s)	77, 529, 609, 814
Vha464I	CTTAAG	1 cut(s)	1030
VpaK11BI	GGWCC	2 cut(s)	591, 1026
XapI	RAATTY	1 cut(s)	409
XbaI	TCTAGA	1 cut(s)	454
XceI	RCATGY	4 cut(s)	664, 783, 989, 1019
XmaI	CCCGGG	1 cut(s)	634
XspI	CTAG	5 cut(s)	309, 351, 455, 588, 906
Zsp2I	ATGCAT	2 cut(s)	781, 1017

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.