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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G25590 AT4G32440 AT4G32440 AT4G32440 |
| fragaria_vesca | FvH4_2g29660 FvH4_2g29660 FvH4_2g29660 |
| malus_domestica | MD08G1144800.v1.1 MD15G1119500.v1.1 |
| prunus_persica | Prupe.1G473100_v2.0.a1 Prupe.1G473100_v2.0.a1 Prupe.1G473100_v2.0.a1 Prupe.1G473100_v2.0.a1 |
| pyrus_communis | pycom08g12210 pycom15g10850 |
| rosa_chinensis | RchiOBHm_Chr6g0298631 RchiOBHm_Chr7g0226201 |
| rosa_laevigata | RLG00000001759 |
| rosa_multiflora | Rmu_co8115666.1_g000001 Rmu_sc0001350.1_g000005 Rmu_sc0034903.1_g000002 |
| rosa_roxburghii | Rroxscaffold_3G00233130 Rroxscaffold_7G00169470 |
| rosa_rugosa | Rorug07G0235600 Rorug07G0235700 |
| rosa_samantha | Rh6AG393200 Rh6BG401000 Rh6DG393600 Rh7AG382500 Rh7BG369600 Rh7CG402000 Rh7DG380800 |
| rosa_wichuraiana | Rw6G034380 Rw7G032050 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 92 |
| AccB1I | GGYRCC | 2 cut(s) | 241, 1253 |
| AccII | CGCG | 2 cut(s) | 358, 637 |
| AccIII | TCCGGA | 1 cut(s) | 970 |
| AciI | CCGC | 7 cut(s) | 356, 358, 383, 635, 637, 662, 1099 |
| AclWI | GGATC | 6 cut(s) | 184, 517, 551, 796, 830, 889 |
| AcoI | YGGCCR | 1 cut(s) | 495 |
| AcsI | RAATTY | 3 cut(s) | 925, 1242, 1451 |
| AcuI | CTGAAG | 2 cut(s) | 231, 1530 |
| AcyI | GRCGYC | 1 cut(s) | 89 |
| AfaI | GTAC | 2 cut(s) | 225, 1525 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 361, 392, 640, 671, 1472, 1642 |
| AgsI | TTSAA | 6 cut(s) | 202, 565, 844, 1271, 1316, 1353 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1498 |
| AjnI | CCWGG | 1 cut(s) | 497 |
| AleI | CACNNNNGTG | 1 cut(s) | 17 |
| AluBI | AGCT | 4 cut(s) | 887, 940, 1079, 1278 |
| AluI | AGCT | 4 cut(s) | 887, 940, 1079, 1278 |
| Alw21I | GWGCWC | 1 cut(s) | 1194 |
| Alw26I | GTCTC | 6 cut(s) | 175, 321, 919, 1009, 1018, 1485 |
| Alw44I | GTGCAC | 1 cut(s) | 1190 |
| AlwI | GGATC | 6 cut(s) | 184, 517, 551, 796, 830, 889 |
| Aor13HI | TCCGGA | 1 cut(s) | 970 |
| AoxI | GGCC | 5 cut(s) | 3, 371, 495, 650, 1633 |
| ApaLI | GTGCAC | 1 cut(s) | 1190 |
| ApeKI | GCWGC | 2 cut(s) | 781, 940 |
| ApoI | RAATTY | 3 cut(s) | 925, 1242, 1451 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1346, 1378 |
| AspLEI | GCGC | 2 cut(s) | 266, 1439 |
| AspS9I | GGNCC | 1 cut(s) | 1119 |
| AsuC2I | CCSGG | 1 cut(s) | 1366 |
| AsuHPI | GGTGA | 2 cut(s) | 428, 707 |
| AvaII | GGWCC | 1 cut(s) | 1119 |
| BaeGI | GKGCMC | 1 cut(s) | 1194 |
| BalI | TGGCCA | 1 cut(s) | 497 |
| BanI | GGYRCC | 2 cut(s) | 241, 1253 |
| Bbv12I | GWGCWC | 1 cut(s) | 1194 |
| BbvCI | CCTCAGC | 1 cut(s) | 1009 |
| BbvI | GCAGC | 2 cut(s) | 768, 927 |
| BccI | CCATC | 5 cut(s) | 101, 448, 727, 1277, 1621 |
| BceAI | ACGGC | 1 cut(s) | 1506 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1499, 1533 |
| BciT130I | CCWGG | 1 cut(s) | 499 |
| BcnI | CCSGG | 1 cut(s) | 1366 |
| BcoDI | GTCTC | 6 cut(s) | 175, 321, 919, 1009, 1018, 1485 |
| BfaI | CTAG | 6 cut(s) | 540, 777, 819, 1116, 1376, 1497 |
| BfoI | RGCGCY | 1 cut(s) | 1440 |
| BisI | GCNGC | 3 cut(s) | 782, 941, 1100 |
| BlsI | GCNGC | 3 cut(s) | 783, 942, 1101 |
| BmcAI | AGTACT | 1 cut(s) | 225 |
| Bme1390I | CCNGG | 2 cut(s) | 499, 1366 |
| Bme18I | GGWCC | 1 cut(s) | 1119 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1498 |
| BmgT120I | GGNCC | 1 cut(s) | 1119 |
| BmiI | GGNNCC | 3 cut(s) | 243, 1121, 1255 |
| BmrFI | CCNGG | 2 cut(s) | 499, 1366 |
| BmrI | ACTGGG | 1 cut(s) | 334 |
| BmsI | GCATC | 4 cut(s) | 1022, 1138, 1291, 1405 |
| BmuI | ACTGGG | 1 cut(s) | 334 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 9, 41, 1015, 1047 |
| BpmI | CTGGAG | 1 cut(s) | 894 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1009 |
| BpuEI | CTTGAG | 1 cut(s) | 1157 |
| BpuMI | CCSGG | 1 cut(s) | 1366 |
| BsaAI | YACGTR | 1 cut(s) | 1189 |
| BsaHI | GRCGYC | 1 cut(s) | 89 |
| BsaI | GGTCTC | 3 cut(s) | 175, 321, 1018 |
| BsaJI | CCNNGG | 3 cut(s) | 356, 635, 1636 |
| BsaWI | WCCGGW | 1 cut(s) | 970 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 892, 922 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 361, 392, 640, 671, 1472, 1642 |
| Bse118I | RCCGGY | 1 cut(s) | 1379 |
| Bse1I | ACTGG | 2 cut(s) | 329, 911 |
| Bse3DI | GCAATG | 2 cut(s) | 50, 289 |
| BseAI | TCCGGA | 1 cut(s) | 970 |
| BseBI | CCWGG | 1 cut(s) | 499 |
| BseDI | CCNNGG | 3 cut(s) | 356, 635, 1636 |
| BseGI | GGATG | 4 cut(s) | 93, 456, 1288, 1483 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 361, 392, 640, 671, 1472, 1642 |
| BseMI | GCAATG | 2 cut(s) | 50, 289 |
| BseMII | CTCAG | 2 cut(s) | 186, 1023 |
| BseNI | ACTGG | 2 cut(s) | 329, 911 |
| BseRI | GAGGAG | 4 cut(s) | 533, 812, 957, 997 |
| BseSI | GKGCMC | 1 cut(s) | 1194 |
| BseXI | GCAGC | 2 cut(s) | 768, 927 |
| BsgI | GTGCAG | 2 cut(s) | 417, 696 |
| Bsh1236I | CGCG | 2 cut(s) | 358, 637 |
| BshFI | GGCC | 5 cut(s) | 5, 373, 497, 652, 1635 |
| BshNI | GGYRCC | 2 cut(s) | 241, 1253 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1194 |
| BsiSI | CCGG | 3 cut(s) | 971, 1365, 1380 |
| BslFI | GGGAC | 3 cut(s) | 338, 617, 1105 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 361, 392, 640, 671, 1472, 1642 |
| BsmAI | GTCTC | 6 cut(s) | 175, 321, 919, 1009, 1018, 1485 |
| BsmFI | GGGAC | 3 cut(s) | 338, 617, 1105 |
| BsnI | GGCC | 5 cut(s) | 5, 373, 497, 652, 1635 |
| Bso31I | GGTCTC | 3 cut(s) | 175, 321, 1018 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1194 |
| Bsp13I | TCCGGA | 1 cut(s) | 970 |
| Bsp143I | GATC | 7 cut(s) | 127, 176, 509, 543, 788, 822, 881 |
| Bsp19I | CCATGG | 1 cut(s) | 1636 |
| BspACI | CCGC | 7 cut(s) | 356, 358, 383, 635, 637, 662, 1099 |
| BspANI | GGCC | 5 cut(s) | 5, 373, 497, 652, 1635 |
| BspCNI | CTCAG | 2 cut(s) | 185, 1022 |
| BspEI | TCCGGA | 1 cut(s) | 970 |
| BspFNI | CGCG | 2 cut(s) | 358, 637 |
| BspHI | TCATGA | 1 cut(s) | 192 |
| BspLI | GGNNCC | 3 cut(s) | 243, 1121, 1255 |
| BspPI | GGATC | 6 cut(s) | 184, 517, 551, 796, 830, 889 |
| BspT107I | GGYRCC | 2 cut(s) | 241, 1253 |
| BspTNI | GGTCTC | 3 cut(s) | 175, 321, 1018 |
| BsrDI | GCAATG | 2 cut(s) | 50, 289 |
| BsrFI | RCCGGY | 1 cut(s) | 1379 |
| BsrI | ACTGG | 2 cut(s) | 329, 911 |
| BssAI | RCCGGY | 1 cut(s) | 1379 |
| BssECI | CCNNGG | 3 cut(s) | 356, 635, 1636 |
| BssMI | GATC | 7 cut(s) | 127, 176, 509, 543, 788, 822, 881 |
| BssNI | GRCGYC | 1 cut(s) | 89 |
| BssT1I | CCWWGG | 1 cut(s) | 1636 |
| Bst2UI | CCWGG | 1 cut(s) | 499 |
| Bst4CI | ACNGT | 4 cut(s) | 299, 983, 1349, 1388 |
| BstACI | GRCGYC | 1 cut(s) | 89 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1660 |
| BstBAI | YACGTR | 1 cut(s) | 1189 |
| BstC8I | GCNNGC | 6 cut(s) | 103, 1194, 1306, 1512, 1542, 1656 |
| BstDEI | CTNAG | 4 cut(s) | 172, 463, 742, 1009 |
| BstDSI | CCRYGG | 3 cut(s) | 356, 635, 1636 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1470 |
| BstF5I | GGATG | 4 cut(s) | 93, 456, 1288, 1483 |
| BstFNI | CGCG | 2 cut(s) | 358, 637 |
| BstH2I | RGCGCY | 1 cut(s) | 1440 |
| BstHHI | GCGC | 2 cut(s) | 266, 1439 |
| BstKTI | GATC | 7 cut(s) | 130, 179, 512, 546, 791, 825, 884 |
| BstMAI | GTCTC | 6 cut(s) | 175, 321, 919, 1009, 1018, 1485 |
| BstMBI | GATC | 7 cut(s) | 127, 176, 509, 543, 788, 822, 881 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 1655, 1660 |
| BstNI | CCWGG | 1 cut(s) | 499 |
| BstNSI | RCATGY | 5 cut(s) | 109, 1308, 1514, 1544, 1658 |
| BstSCI | CCNGG | 2 cut(s) | 497, 1364 |
| BstSLI | GKGCMC | 1 cut(s) | 1194 |
| BstUI | CGCG | 2 cut(s) | 358, 637 |
| BstV1I | GCAGC | 2 cut(s) | 768, 927 |
| BstX2I | RGATCY | 1 cut(s) | 176 |
| BstYI | RGATCY | 1 cut(s) | 176 |
| BsuRI | GGCC | 5 cut(s) | 5, 373, 497, 652, 1635 |
| BtgI | CCRYGG | 3 cut(s) | 356, 635, 1636 |
| BtsCI | GGATG | 4 cut(s) | 93, 456, 1288, 1483 |
| BtsI | GCAGTG | 1 cut(s) | 266 |
| BtsIMutI | CAGTG | 3 cut(s) | 266, 304, 1393 |
| Cac8I | GCNNGC | 6 cut(s) | 103, 1194, 1306, 1512, 1542, 1656 |
| CciI | TCATGA | 1 cut(s) | 192 |
| CfoI | GCGC | 2 cut(s) | 266, 1439 |
| Cfr10I | RCCGGY | 1 cut(s) | 1379 |
| Cfr13I | GGNCC | 1 cut(s) | 1119 |
| Cfr42I | CCGCGG | 2 cut(s) | 359, 638 |
| CseI | GACGC | 2 cut(s) | 542, 821 |
| Csp6I | GTAC | 2 cut(s) | 224, 1524 |
| CviAII | CATG | 9 cut(s) | 106, 193, 255, 1263, 1305, 1511, 1541, 1637, 1655 |
| CviQI | GTAC | 2 cut(s) | 224, 1524 |
| DdeI | CTNAG | 4 cut(s) | 172, 463, 742, 1009 |
| DpnI | GATC | 7 cut(s) | 129, 178, 511, 545, 790, 824, 883 |
| DpnII | GATC | 7 cut(s) | 127, 176, 509, 543, 788, 822, 881 |
| DraI | TTTAAA | 1 cut(s) | 1248 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1498 |
| EaeI | YGGCCR | 1 cut(s) | 495 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1498 |
| EciI | GGCGGA | 2 cut(s) | 372, 651 |
| Eco130I | CCWWGG | 1 cut(s) | 1636 |
| Eco147I | AGGCCT | 2 cut(s) | 373, 652 |
| Eco31I | GGTCTC | 3 cut(s) | 175, 321, 1018 |
| Eco47I | GGWCC | 1 cut(s) | 1119 |
| Eco57I | CTGAAG | 2 cut(s) | 231, 1530 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1470 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1119 |
| EcoRII | CCWGG | 1 cut(s) | 497 |
| EcoT14I | CCWWGG | 1 cut(s) | 1636 |
| EcoT22I | ATGCAT | 2 cut(s) | 1306, 1542 |
| ErhI | CCWWGG | 1 cut(s) | 1636 |
| FaeI | CATG | 9 cut(s) | 109, 196, 258, 1266, 1308, 1514, 1544, 1640, 1658 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1389, 1421 |
| FaqI | GGGAC | 3 cut(s) | 338, 617, 1105 |
| FatI | CATG | 9 cut(s) | 105, 192, 254, 1262, 1304, 1510, 1540, 1636, 1654 |
| FauI | CCCGC | 2 cut(s) | 363, 642 |
| Fnu4HI | GCNGC | 3 cut(s) | 782, 941, 1100 |
| FokI | GGATG | 4 cut(s) | 80, 463, 1295, 1490 |
| Fsp4HI | GCNGC | 3 cut(s) | 782, 941, 1100 |
| FspBI | CTAG | 6 cut(s) | 540, 777, 819, 1116, 1376, 1497 |
| GlaI | GCGC | 2 cut(s) | 265, 1438 |
| GluI | GCNGC | 3 cut(s) | 782, 941, 1100 |
| GsuI | CTGGAG | 1 cut(s) | 894 |
| HaeII | RGCGCY | 1 cut(s) | 1440 |
| HaeIII | GGCC | 5 cut(s) | 5, 373, 497, 652, 1635 |
| HapII | CCGG | 3 cut(s) | 971, 1365, 1380 |
| HgaI | GACGC | 2 cut(s) | 542, 821 |
| HhaI | GCGC | 2 cut(s) | 266, 1439 |
| Hin1I | GRCGYC | 1 cut(s) | 89 |
| Hin1II | CATG | 9 cut(s) | 109, 196, 258, 1266, 1308, 1514, 1544, 1640, 1658 |
| Hin6I | GCGC | 2 cut(s) | 264, 1437 |
| HinP1I | GCGC | 2 cut(s) | 264, 1437 |
| HpaII | CCGG | 3 cut(s) | 971, 1365, 1380 |
| HphI | GGTGA | 2 cut(s) | 428, 707 |
| Hpy166II | GTNNAC | 2 cut(s) | 962, 1192 |
| Hpy188I | TCNGA | 4 cut(s) | 1282, 1470, 1504, 1530 |
| Hpy188III | TCNNGA | 8 cut(s) | 174, 193, 202, 249, 448, 727, 918, 971 |
| Hpy8I | GTNNAC | 2 cut(s) | 962, 1192 |
| HpyCH4III | ACNGT | 4 cut(s) | 299, 983, 1349, 1388 |
| HpyCH4IV | ACGT | 3 cut(s) | 73, 89, 1188 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 1655, 1660 |
| HpyF3I | CTNAG | 4 cut(s) | 172, 463, 742, 1009 |
| HpySE526I | ACGT | 3 cut(s) | 73, 89, 1188 |
| Hsp92I | GRCGYC | 1 cut(s) | 89 |
| Hsp92II | CATG | 9 cut(s) | 109, 196, 258, 1266, 1308, 1514, 1544, 1640, 1658 |
| HspAI | GCGC | 2 cut(s) | 264, 1437 |
| Kpn2I | TCCGGA | 1 cut(s) | 970 |
| KspI | CCGCGG | 2 cut(s) | 359, 638 |
| Kzo9I | GATC | 7 cut(s) | 127, 176, 509, 543, 788, 822, 881 |
| LmnI | GCTCC | 2 cut(s) | 210, 251 |
| Lsp1109I | GCAGC | 2 cut(s) | 768, 927 |
| LweI | GCATC | 4 cut(s) | 1022, 1138, 1291, 1405 |
| MaeI | CTAG | 6 cut(s) | 540, 777, 819, 1116, 1376, 1497 |
| MaeII | ACGT | 3 cut(s) | 73, 89, 1188 |
| MaeIII | GTNAC | 6 cut(s) | 8, 69, 133, 1343, 1382, 1480 |
| MalI | GATC | 7 cut(s) | 129, 178, 511, 545, 790, 824, 883 |
| MboI | GATC | 7 cut(s) | 127, 176, 509, 543, 788, 822, 881 |
| MboII | GAAGA | 4 cut(s) | 742, 1403, 1409, 1583 |
| MflI | RGATCY | 1 cut(s) | 176 |
| MhlI | GDGCHC | 1 cut(s) | 1194 |
| MlsI | TGGCCA | 1 cut(s) | 497 |
| MluCI | AATT | 5 cut(s) | 925, 1242, 1258, 1451, 1456 |
| MluNI | TGGCCA | 1 cut(s) | 497 |
| MlyI | GAGTC | 4 cut(s) | 360, 639, 1415, 1487 |
| MmeI | TCCRAC | 1 cut(s) | 1482 |
| Mox20I | TGGCCA | 1 cut(s) | 497 |
| Mph1103I | ATGCAT | 2 cut(s) | 1306, 1542 |
| MroI | TCCGGA | 1 cut(s) | 970 |
| MscI | TGGCCA | 1 cut(s) | 497 |
| MseI | TTAA | 7 cut(s) | 140, 929, 1019, 1247, 1455, 1535, 1556 |
| MslI | CAYNNNNRTG | 3 cut(s) | 17, 140, 259 |
| Msp20I | TGGCCA | 1 cut(s) | 497 |
| MspA1I | CMGCKG | 2 cut(s) | 358, 637 |
| MspI | CCGG | 3 cut(s) | 971, 1365, 1380 |
| MspR9I | CCNGG | 2 cut(s) | 499, 1366 |
| MvaI | CCWGG | 1 cut(s) | 499 |
| MvnI | CGCG | 2 cut(s) | 358, 637 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 1655, 1660 |
| NciI | CCSGG | 1 cut(s) | 1366 |
| NcoI | CCATGG | 1 cut(s) | 1636 |
| NdeII | GATC | 7 cut(s) | 127, 176, 509, 543, 788, 822, 881 |
| NlaIII | CATG | 9 cut(s) | 109, 196, 258, 1266, 1308, 1514, 1544, 1640, 1658 |
| NlaIV | GGNNCC | 3 cut(s) | 243, 1121, 1255 |
| NmuCI | GTSAC | 3 cut(s) | 8, 133, 1382 |
| NsiI | ATGCAT | 2 cut(s) | 1306, 1542 |
| NspI | RCATGY | 5 cut(s) | 109, 1308, 1514, 1544, 1658 |
| OliI | CACNNNNGTG | 1 cut(s) | 17 |
| PaeI | GCATGC | 4 cut(s) | 1308, 1514, 1544, 1658 |
| PagI | TCATGA | 1 cut(s) | 192 |
| PceI | AGGCCT | 2 cut(s) | 373, 652 |
| PfeI | GAWTC | 6 cut(s) | 198, 528, 807, 992, 1091, 1316 |
| PkrI | GCNGC | 3 cut(s) | 783, 942, 1101 |
| PleI | GAGTC | 4 cut(s) | 359, 638, 1415, 1487 |
| PpsI | GAGTC | 4 cut(s) | 359, 638, 1415, 1487 |
| Ppu21I | YACGTR | 1 cut(s) | 1189 |
| PpuMI | RGGWCCY | 1 cut(s) | 1119 |
| Psp5II | RGGWCCY | 1 cut(s) | 1119 |
| Psp6I | CCWGG | 1 cut(s) | 497 |
| PspGI | CCWGG | 1 cut(s) | 497 |
| PspN4I | GGNNCC | 3 cut(s) | 243, 1121, 1255 |
| PspPI | GGNCC | 1 cut(s) | 1119 |
| PspPPI | RGGWCCY | 1 cut(s) | 1119 |
| PsuI | RGATCY | 1 cut(s) | 176 |
| RsaI | GTAC | 2 cut(s) | 225, 1525 |
| RsaNI | GTAC | 2 cut(s) | 224, 1524 |
| RseI | CAYNNNNRTG | 3 cut(s) | 17, 140, 259 |
| SacII | CCGCGG | 2 cut(s) | 359, 638 |
| SaqAI | TTAA | 7 cut(s) | 140, 929, 1019, 1247, 1455, 1535, 1556 |
| SatI | GCNGC | 3 cut(s) | 782, 941, 1100 |
| Sau3AI | GATC | 7 cut(s) | 127, 176, 509, 543, 788, 822, 881 |
| Sau96I | GGNCC | 1 cut(s) | 1119 |
| ScaI | AGTACT | 1 cut(s) | 225 |
| SchI | GAGTC | 4 cut(s) | 360, 639, 1415, 1487 |
| ScrFI | CCNGG | 2 cut(s) | 499, 1366 |
| SduI | GDGCHC | 1 cut(s) | 1194 |
| SfaNI | GCATC | 4 cut(s) | 1022, 1138, 1291, 1405 |
| Sfr303I | CCGCGG | 2 cut(s) | 359, 638 |
| SgrBI | CCGCGG | 2 cut(s) | 359, 638 |
| SinI | GGWCC | 1 cut(s) | 1119 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 17, 140, 259 |
| SmlI | CTYRAG | 1 cut(s) | 1136 |
| SmoI | CTYRAG | 1 cut(s) | 1136 |
| SphI | GCATGC | 4 cut(s) | 1308, 1514, 1544, 1658 |
| Sse9I | AATT | 5 cut(s) | 925, 1242, 1258, 1451, 1456 |
| SseBI | AGGCCT | 2 cut(s) | 373, 652 |
| SsiI | CCGC | 7 cut(s) | 356, 358, 383, 635, 637, 662, 1099 |
| SspI | AATATT | 1 cut(s) | 1223 |
| SspMI | CTAG | 6 cut(s) | 540, 777, 819, 1116, 1376, 1497 |
| StuI | AGGCCT | 2 cut(s) | 373, 652 |
| StyD4I | CCNGG | 2 cut(s) | 497, 1364 |
| StyI | CCWWGG | 1 cut(s) | 1636 |
| TaaI | ACNGT | 4 cut(s) | 299, 983, 1349, 1388 |
| TaiI | ACGT | 3 cut(s) | 76, 92, 1191 |
| TasI | AATT | 5 cut(s) | 925, 1242, 1258, 1451, 1456 |
| TatI | WGTACW | 1 cut(s) | 223 |
| TauI | GCSGC | 1 cut(s) | 1102 |
| TfiI | GAWTC | 6 cut(s) | 198, 528, 807, 992, 1091, 1316 |
| Tru1I | TTAA | 7 cut(s) | 140, 929, 1019, 1247, 1455, 1535, 1556 |
| Tru9I | TTAA | 7 cut(s) | 140, 929, 1019, 1247, 1455, 1535, 1556 |
| TscAI | CASTG | 3 cut(s) | 266, 304, 1393 |
| TseFI | GTSAC | 3 cut(s) | 8, 133, 1382 |
| TseI | GCWGC | 2 cut(s) | 781, 940 |
| Tsp45I | GTSAC | 3 cut(s) | 8, 133, 1382 |
| TspDTI | ATGAA | 6 cut(s) | 495, 774, 938, 1251, 1410, 1632 |
| TspGWI | ACGGA | 1 cut(s) | 1580 |
| TspRI | CASTG | 3 cut(s) | 266, 304, 1393 |
| VneI | GTGCAC | 1 cut(s) | 1190 |
| VpaK11BI | GGWCC | 1 cut(s) | 1119 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1470 |
| XapI | RAATTY | 3 cut(s) | 925, 1242, 1451 |
| XceI | RCATGY | 5 cut(s) | 109, 1308, 1514, 1544, 1658 |
| XspI | CTAG | 6 cut(s) | 540, 777, 819, 1116, 1376, 1497 |
| ZraI | GACGTC | 1 cut(s) | 90 |
| ZrmI | AGTACT | 1 cut(s) | 225 |
| Zsp2I | ATGCAT | 2 cut(s) | 1306, 1542 |