Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0003723

Physical Location & Seq

Genomic Coordinates Reverse (-)

7284285 .. 7286482

Gene Structure 2198 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g10850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1188 bp

ATGAGATTCAAGAAGGGAAGCAAAGTGGAGGTACTTAGCCAAAAGGAGGTGCCTGGGGGAGCATGGCGCTGTGCTGTGATTGTCTCTGGTAATGGGCACACATATAGTGTTAGCTATGATTGGTCTGGCAAGGATAGTCAGGCAGTTGTGCATGGAGTCTCAAGGAAGGATATTAGGCCTTGCCCTCCGCCTGTTCAAAGAGTGGAGAGTTGGGCAGTTGGTGATGTTGCGGAGGTGTTTGATGTTGGTTTCTGGAAAATGGCCACGGTGATAAGGGTCTTGGATGAAAATTATTACTTGGCTAGGATACTTGGATCTTTTGAGGAGTTAAGAGTCCAGAAATATAGGATCAGGGCACGCCAATTATGGAAGGATGACAAATGGTTTGTGATCGGAAAGGGTCCAGACAATCGGATGAGCTCACAAGACCCCCAAATGAAAGCAAAAATAAAGCTACCCGCCAGGAATGATTGTTTACCTCCTCTGTACAACATCAGCTGTCAGGATTCCCATAGTGTTTCATCTGGATCTTTGAAGAAGGCTTATCCATATAGCTCTTCTATTGAGGGATATTCTCGAAAGATGAGGGCAATTGAGAAGGGGTGTGAGCGTCAACGCGTTTTTTCTGGGTCCCCATCTTACTTGCTCAAAAAGGTGGATGCTGTTGCTAACCCGCGAGAAAATCTGGTGGAAGAATACATGCATACATCCTTTATTAATCGCACAACTGGATGTGTTGAAAAGGAGAGGGAAAAGTTAAATGGTGTTATTTCTTGTTTTGTTGAAAGAAGCTCAGAACTTAATGATAGCGATAGTGATGCATGCTCTGTTGGTAGTTGTAGTGTTATCAGTAGCAGTTCAAATAAGTTGTCCGGTCACAATTTAGCAGGTACTAGTCAAGATGTAGATACCCTTTCTAGTGATGCAGAGTCCTTTTGTTGCTGTGAAGATGCGCAAGAAAAATTTTCCCTTCCTCTAAAAGAGGATGTAGCAGCAGGAATCCATAGGTTAGAGTTGAATGCTTATCGCAGTACTCTGGTGGCAATGCATGCTTGTGGGTCCTTAAGCTGGGAACAAGAAGCGTTGTTGACAAATCTCCGTATTTCACTTCACATTTCAAATGATGAACATTTGATGGAAGGCCAAGGTTGGAGCCTTGCTTGGCTTGCCTTGCTTCCAAAGGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Agenet ENT

Protein Analysis

396

Amino Acids

44.01

Weight (kDa)

7.51

Isoelectric Point (pI)

48.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Agenet	PF05641	6 - 63	3.3e-16	Agenet domain
ENT	PF03735	334 - 378	1.6e-11	ENT domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003723)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25590 AT4G32440 AT4G32440 AT4G32440
fragaria_vesca	FvH4_2g29660 FvH4_2g29660 FvH4_2g29660
malus_domestica	MD08G1144800.v1.1 MD15G1119500.v1.1
prunus_persica	Prupe.1G473100_v2.0.a1 Prupe.1G473100_v2.0.a1 Prupe.1G473100_v2.0.a1 Prupe.1G473100_v2.0.a1
pyrus_communis	pycom08g12210 pycom15g10850
rosa_chinensis	RchiOBHm_Chr6g0298631 RchiOBHm_Chr7g0226201
rosa_laevigata	RLG00000001759
rosa_multiflora	Rmu_co8115666.1_g000001 Rmu_sc0001350.1_g000005 Rmu_sc0034903.1_g000002
rosa_roxburghii	Rroxscaffold_3G00233130 Rroxscaffold_7G00169470
rosa_rugosa	Rorug07G0235600 Rorug07G0235700
rosa_samantha	Rh6AG393200 Rh6BG401000 Rh6DG393600 Rh7AG382500 Rh7BG369600 Rh7CG402000 Rh7DG380800
rosa_wichuraiana	Rw6G034380 Rw7G032050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	954
Acc36I	ACCTGC	1 cut(s)	878
AccB1I	GGYRCC	1 cut(s)	49
AccII	CGCG	2 cut(s)	618, 676
AciI	CCGC	4 cut(s)	188, 230, 459, 674
AclWI	GGATC	3 cut(s)	322, 356, 535
AcoI	YGGCCR	1 cut(s)	261
AcsI	RAATTY	1 cut(s)	962
AfaI	GTAC	4 cut(s)	33, 488, 892, 1033
AfiI	CCNNNNNNNGG	2 cut(s)	46, 1068
AflII	CTTAAG	1 cut(s)	1063
AflIII	ACRYGT	1 cut(s)	616
AgsI	TTSAA	8 cut(s)	10, 197, 535, 740, 785, 861, 1018, 1119
AhlI	ACTAGT	1 cut(s)	893
AjnI	CCWGG	2 cut(s)	52, 461
AluBI	AGCT	7 cut(s)	114, 420, 454, 498, 555, 792, 1068
AluI	AGCT	7 cut(s)	114, 420, 454, 498, 555, 792, 1068
Alw21I	GWGCWC	1 cut(s)	422
Alw26I	GTCTC	2 cut(s)	88, 163
AlwI	GGATC	3 cut(s)	322, 356, 535
AoxI	GGCC	4 cut(s)	176, 261, 1141, 1182
ApeKI	GCWGC	1 cut(s)	992
ApoI	RAATTY	1 cut(s)	962
ArsI	GACNNNNNNTTYG	4 cut(s)	368, 400, 854, 886
AseI	ATTAAT	1 cut(s)	717
AspLEI	GCGC	2 cut(s)	69, 955
AspS9I	GGNCC	3 cut(s)	401, 630, 1059
AsuHPI	GGTGA	2 cut(s)	233, 280
AvaII	GGWCC	3 cut(s)	401, 630, 1059
BaeGI	GKGCMC	2 cut(s)	99, 358
BalI	TGGCCA	1 cut(s)	263
BanI	GGYRCC	1 cut(s)	49
BanII	GRGCYC	1 cut(s)	422
Bbv12I	GWGCWC	1 cut(s)	422
BbvI	GCAGC	1 cut(s)	1004
BccI	CCATC	2 cut(s)	643, 1129
BcgI	CGANNNNNNTGC	2 cut(s)	800, 834
BciT130I	CCWGG	2 cut(s)	54, 463
BciVI	GTATCC	1 cut(s)	300
BcoDI	GTCTC	2 cut(s)	88, 163
BcuI	ACTAGT	1 cut(s)	893
BfaI	CTAG	4 cut(s)	303, 894, 918, 1186
BfoI	RGCGCY	1 cut(s)	70
BfrI	CTTAAG	1 cut(s)	1063
BfuAI	ACCTGC	1 cut(s)	878
BfuI	GTATCC	1 cut(s)	300
BisI	GCNGC	1 cut(s)	993
BlsI	GCNGC	1 cut(s)	994
BmcAI	AGTACT	1 cut(s)	1033
Bme1390I	CCNGG	2 cut(s)	54, 463
Bme18I	GGWCC	3 cut(s)	401, 630, 1059
BmgT120I	GGNCC	3 cut(s)	401, 630, 1059
BmiI	GGNNCC	6 cut(s)	51, 402, 631, 632, 1060, 1154
BmrFI	CCNGG	2 cut(s)	54, 463
BmsI	GCATC	4 cut(s)	649, 808, 913, 940
BpuEI	CTTGAG	1 cut(s)	145
BsaJI	CCNNGG	3 cut(s)	53, 264, 1144
BsaWI	WCCGGW	1 cut(s)	872
Bsc4I	CCNNNNNNNGG	2 cut(s)	46, 1068
Bse1I	ACTGG	1 cut(s)	733
Bse3DI	GCAATG	1 cut(s)	1050
BseBI	CCWGG	2 cut(s)	54, 463
BseDI	CCNNGG	3 cut(s)	53, 264, 1144
BseGI	GGATG	7 cut(s)	289, 379, 420, 664, 707, 737, 991
BseLI	CCNNNNNNNGG	2 cut(s)	46, 1068
BseMI	GCAATG	1 cut(s)	1050
BseMII	CTCAG	1 cut(s)	807
BseNI	ACTGG	1 cut(s)	733
BseRI	GAGGAG	2 cut(s)	338, 471
BseSI	GKGCMC	2 cut(s)	99, 358
BseXI	GCAGC	1 cut(s)	1004
BseYI	CCCAGC	1 cut(s)	1068
Bsh1236I	CGCG	2 cut(s)	618, 676
BshFI	GGCC	4 cut(s)	178, 263, 1143, 1184
BshNI	GGYRCC	1 cut(s)	49
BsiHKAI	GWGCWC	1 cut(s)	422
BsiSI	CCGG	1 cut(s)	873
BslFI	GGGAC	1 cut(s)	616
BslI	CCNNNNNNNGG	2 cut(s)	46, 1068
BsmAI	GTCTC	2 cut(s)	88, 163
BsmFI	GGGAC	1 cut(s)	616
BsmI	GAATGC	1 cut(s)	1024
BsnI	GGCC	4 cut(s)	178, 263, 1143, 1184
Bsp1286I	GDGCHC	3 cut(s)	99, 358, 422
Bsp1407I	TGTACA	1 cut(s)	486
Bsp143I	GATC	4 cut(s)	314, 348, 390, 527
BspACI	CCGC	4 cut(s)	188, 230, 459, 674
BspANI	GGCC	4 cut(s)	178, 263, 1143, 1184
BspCNI	CTCAG	1 cut(s)	806
BspFNI	CGCG	2 cut(s)	618, 676
BspLI	GGNNCC	6 cut(s)	51, 402, 631, 632, 1060, 1154
BspMI	ACCTGC	1 cut(s)	878
BspPI	GGATC	3 cut(s)	322, 356, 535
BspQI	GCTCTTC	1 cut(s)	562
BspT107I	GGYRCC	1 cut(s)	49
BspTI	CTTAAG	1 cut(s)	1063
BsrDI	GCAATG	1 cut(s)	1050
BsrGI	TGTACA	1 cut(s)	486
BsrI	ACTGG	1 cut(s)	733
BssECI	CCNNGG	3 cut(s)	53, 264, 1144
BssMI	GATC	4 cut(s)	314, 348, 390, 527
BssT1I	CCWWGG	1 cut(s)	1144
Bst2UI	CCWGG	2 cut(s)	54, 463
Bst4CI	ACNGT	1 cut(s)	268
Bst6I	CTCTTC	1 cut(s)	562
BstAFI	CTTAAG	1 cut(s)	1063
BstAPI	GCANNNNNTGC	1 cut(s)	1049
BstAUI	TGTACA	1 cut(s)	486
BstC8I	GCNNGC	4 cut(s)	358, 823, 1050, 1167
BstDEI	CTNAG	2 cut(s)	35, 793
BstDSI	CCRYGG	1 cut(s)	264
BstF5I	GGATG	7 cut(s)	289, 379, 420, 664, 707, 737, 991
BstFNI	CGCG	2 cut(s)	618, 676
BstH2I	RGCGCY	1 cut(s)	70
BstHHI	GCGC	2 cut(s)	69, 955
BstKTI	GATC	4 cut(s)	317, 351, 393, 530
BstMAI	GTCTC	2 cut(s)	88, 163
BstMBI	GATC	4 cut(s)	314, 348, 390, 527
BstMWI	GCNNNNNNNGC	3 cut(s)	1049, 1166, 1171
BstNI	CCWGG	2 cut(s)	54, 463
BstNSI	RCATGY	3 cut(s)	703, 825, 1052
BstSCI	CCNGG	2 cut(s)	52, 461
BstSLI	GKGCMC	2 cut(s)	99, 358
BstUI	CGCG	2 cut(s)	618, 676
BstV1I	GCAGC	1 cut(s)	1004
BstX2I	RGATCY	2 cut(s)	314, 527
BstYI	RGATCY	2 cut(s)	314, 527
BsuI	GTATCC	1 cut(s)	300
BsuRI	GGCC	4 cut(s)	178, 263, 1143, 1184
BtgI	CCRYGG	1 cut(s)	264
BtsCI	GGATG	7 cut(s)	289, 379, 420, 664, 707, 737, 991
BveI	ACCTGC	1 cut(s)	878
Cac8I	GCNNGC	4 cut(s)	358, 823, 1050, 1167
CfoI	GCGC	2 cut(s)	69, 955
Cfr13I	GGNCC	3 cut(s)	401, 630, 1059
CseI	GACGC	1 cut(s)	599
Csp6I	GTAC	4 cut(s)	32, 487, 891, 1032
CviAII	CATG	5 cut(s)	63, 152, 700, 822, 1049
CviQI	GTAC	4 cut(s)	32, 487, 891, 1032
DdeI	CTNAG	2 cut(s)	35, 793
DpnI	GATC	4 cut(s)	316, 350, 392, 529
DpnII	GATC	4 cut(s)	314, 348, 390, 527
EaeI	YGGCCR	1 cut(s)	261
Eam1104I	CTCTTC	1 cut(s)	562
EarI	CTCTTC	1 cut(s)	562
EciI	GGCGGA	1 cut(s)	177
Ecl136II	GAGCTC	1 cut(s)	420
Eco130I	CCWWGG	1 cut(s)	1144
Eco147I	AGGCCT	2 cut(s)	178, 1184
Eco24I	GRGCYC	1 cut(s)	422
Eco47I	GGWCC	3 cut(s)	401, 630, 1059
Eco53kI	GAGCTC	1 cut(s)	420
EcoICRI	GAGCTC	1 cut(s)	420
EcoO109I	RGGNCCY	2 cut(s)	630, 1059
EcoRII	CCWGG	2 cut(s)	52, 461
EcoT14I	CCWWGG	1 cut(s)	1144
EcoT22I	ATGCAT	3 cut(s)	705, 823, 1050
EcoT38I	GRGCYC	1 cut(s)	422
ErhI	CCWWGG	1 cut(s)	1144
FaeI	CATG	5 cut(s)	66, 155, 703, 825, 1052
FaqI	GGGAC	1 cut(s)	616
FatI	CATG	5 cut(s)	62, 151, 699, 821, 1048
FauI	CCCGC	2 cut(s)	466, 681
Fnu4HI	GCNGC	1 cut(s)	993
FokI	GGATG	7 cut(s)	296, 386, 427, 671, 694, 744, 998
FriOI	GRGCYC	1 cut(s)	422
Fsp4HI	GCNGC	1 cut(s)	993
FspBI	CTAG	4 cut(s)	303, 894, 918, 1186
FspI	TGCGCA	1 cut(s)	954
GlaI	GCGC	2 cut(s)	68, 954
GluI	GCNGC	1 cut(s)	993
GsaI	CCCAGC	1 cut(s)	1072
HaeII	RGCGCY	1 cut(s)	70
HaeIII	GGCC	4 cut(s)	178, 263, 1143, 1184
HapII	CCGG	1 cut(s)	873
HgaI	GACGC	1 cut(s)	599
HhaI	GCGC	2 cut(s)	69, 955
Hin1II	CATG	5 cut(s)	66, 155, 703, 825, 1052
Hin6I	GCGC	2 cut(s)	67, 953
HinP1I	GCGC	2 cut(s)	67, 953
HincII	GTYRAC	2 cut(s)	614, 1089
HindII	GTYRAC	2 cut(s)	614, 1089
HinfI	GANTC	6 cut(s)	6, 156, 333, 506, 929, 999
HpaII	CCGG	1 cut(s)	873
HphI	GGTGA	2 cut(s)	233, 280
Hpy166II	GTNNAC	3 cut(s)	476, 614, 1089
Hpy188I	TCNGA	3 cut(s)	395, 414, 796
Hpy188III	TCNNGA	8 cut(s)	10, 253, 337, 404, 503, 525, 576, 899
Hpy8I	GTNNAC	3 cut(s)	476, 614, 1089
HpyAV	CCTTC	7 cut(s)	7, 160, 364, 532, 592, 980, 1133
HpyCH4III	ACNGT	1 cut(s)	268
HpyCH4V	TGCA	5 cut(s)	151, 703, 821, 926, 1048
HpyF10VI	GCNNNNNNNGC	3 cut(s)	1049, 1166, 1171
HpyF3I	CTNAG	2 cut(s)	35, 793
Hsp92II	CATG	5 cut(s)	66, 155, 703, 825, 1052
HspAI	GCGC	2 cut(s)	67, 953
KflI	GGGWCCC	1 cut(s)	630
Kzo9I	GATC	4 cut(s)	314, 348, 390, 527
LguI	GCTCTTC	1 cut(s)	562
LmnI	GCTCC	2 cut(s)	59, 1152
Lsp1109I	GCAGC	1 cut(s)	1004
LweI	GCATC	4 cut(s)	649, 808, 913, 940
MaeI	CTAG	4 cut(s)	303, 894, 918, 1186
MaeIII	GTNAC	1 cut(s)	875
MalI	GATC	4 cut(s)	316, 350, 392, 529
MboI	GATC	4 cut(s)	314, 348, 390, 527
MboII	GAAGA	4 cut(s)	547, 549, 704, 959
MfeI	CAATTG	1 cut(s)	591
MflI	RGATCY	2 cut(s)	314, 527
MhlI	GDGCHC	3 cut(s)	99, 358, 422
MlsI	TGGCCA	1 cut(s)	263
MluCI	AATT	5 cut(s)	289, 362, 591, 880, 962
MluI	ACGCGT	1 cut(s)	616
MluNI	TGGCCA	1 cut(s)	263
MlyI	GAGTC	3 cut(s)	165, 342, 938
MmeI	TCCRAC	1 cut(s)	1130
Mox20I	TGGCCA	1 cut(s)	263
Mph1103I	ATGCAT	3 cut(s)	705, 823, 1050
MscI	TGGCCA	1 cut(s)	263
MseI	TTAA	5 cut(s)	329, 717, 758, 801, 1064
MslI	CAYNNNNRTG	1 cut(s)	1053
Msp20I	TGGCCA	1 cut(s)	263
MspA1I	CMGCKG	1 cut(s)	498
MspCI	CTTAAG	1 cut(s)	1063
MspI	CCGG	1 cut(s)	873
MspR9I	CCNGG	2 cut(s)	54, 463
MunI	CAATTG	1 cut(s)	591
Mva1269I	GAATGC	1 cut(s)	1024
MvaI	CCWGG	2 cut(s)	54, 463
MvnI	CGCG	2 cut(s)	618, 676
MwoI	GCNNNNNNNGC	3 cut(s)	1049, 1166, 1171
NdeII	GATC	4 cut(s)	314, 348, 390, 527
NlaIII	CATG	5 cut(s)	66, 155, 703, 825, 1052
NlaIV	GGNNCC	6 cut(s)	51, 402, 631, 632, 1060, 1154
NmuCI	GTSAC	1 cut(s)	875
NsbI	TGCGCA	1 cut(s)	954
NsiI	ATGCAT	3 cut(s)	705, 823, 1050
NspI	RCATGY	3 cut(s)	703, 825, 1052
PaeI	GCATGC	2 cut(s)	825, 1052
PceI	AGGCCT	2 cut(s)	178, 1184
PciSI	GCTCTTC	1 cut(s)	562
PctI	GAATGC	1 cut(s)	1024
PfeI	GAWTC	3 cut(s)	6, 506, 999
PkrI	GCNGC	1 cut(s)	994
PleI	GAGTC	3 cut(s)	164, 341, 937
PpsI	GAGTC	3 cut(s)	164, 341, 937
PpuMI	RGGWCCY	2 cut(s)	630, 1059
PshBI	ATTAAT	1 cut(s)	717
Psp124BI	GAGCTC	1 cut(s)	422
Psp5II	RGGWCCY	2 cut(s)	630, 1059
Psp6I	CCWGG	2 cut(s)	52, 461
PspFI	CCCAGC	1 cut(s)	1068
PspGI	CCWGG	2 cut(s)	52, 461
PspN4I	GGNNCC	6 cut(s)	51, 402, 631, 632, 1060, 1154
PspPI	GGNCC	3 cut(s)	401, 630, 1059
PspPPI	RGGWCCY	2 cut(s)	630, 1059
PsuI	RGATCY	2 cut(s)	314, 527
PvuII	CAGCTG	1 cut(s)	498
RsaI	GTAC	4 cut(s)	33, 488, 892, 1033
RsaNI	GTAC	4 cut(s)	32, 487, 891, 1032
RseI	CAYNNNNRTG	1 cut(s)	1053
SacI	GAGCTC	1 cut(s)	422
SapI	GCTCTTC	1 cut(s)	562
SaqAI	TTAA	5 cut(s)	329, 717, 758, 801, 1064
SatI	GCNGC	1 cut(s)	993
Sau3AI	GATC	4 cut(s)	314, 348, 390, 527
Sau96I	GGNCC	3 cut(s)	401, 630, 1059
ScaI	AGTACT	1 cut(s)	1033
SchI	GAGTC	3 cut(s)	165, 342, 938
ScrFI	CCNGG	2 cut(s)	54, 463
SduI	GDGCHC	3 cut(s)	99, 358, 422
SfaNI	GCATC	4 cut(s)	649, 808, 913, 940
SinI	GGWCC	3 cut(s)	401, 630, 1059
SmiMI	CAYNNNNRTG	1 cut(s)	1053
SmlI	CTYRAG	2 cut(s)	160, 1063
SmoI	CTYRAG	2 cut(s)	160, 1063
SpeI	ACTAGT	1 cut(s)	893
SphI	GCATGC	2 cut(s)	825, 1052
Sse9I	AATT	5 cut(s)	289, 362, 591, 880, 962
SseBI	AGGCCT	2 cut(s)	178, 1184
SsiI	CCGC	4 cut(s)	188, 230, 459, 674
SspMI	CTAG	4 cut(s)	303, 894, 918, 1186
SstI	GAGCTC	1 cut(s)	422
StuI	AGGCCT	2 cut(s)	178, 1184
StyD4I	CCNGG	2 cut(s)	52, 461
StyI	CCWWGG	1 cut(s)	1144
TaaI	ACNGT	1 cut(s)	268
TaqI	TCGA	1 cut(s)	577
TasI	AATT	5 cut(s)	289, 362, 591, 880, 962
TatI	WGTACW	2 cut(s)	486, 1031
TfiI	GAWTC	3 cut(s)	6, 506, 999
Tru1I	TTAA	5 cut(s)	329, 717, 758, 801, 1064
Tru9I	TTAA	5 cut(s)	329, 717, 758, 801, 1064
TseFI	GTSAC	1 cut(s)	875
TseI	GCWGC	1 cut(s)	992
Tsp45I	GTSAC	1 cut(s)	875
TspDTI	ATGAA	4 cut(s)	300, 452, 510, 1140
TspGWI	ACGGA	1 cut(s)	1088
Vha464I	CTTAAG	1 cut(s)	1063
VpaK11BI	GGWCC	3 cut(s)	401, 630, 1059
VspI	ATTAAT	1 cut(s)	717
XapI	RAATTY	1 cut(s)	962
XceI	RCATGY	3 cut(s)	703, 825, 1052
XspI	CTAG	4 cut(s)	303, 894, 918, 1186
ZrmI	AGTACT	1 cut(s)	1033
Zsp2I	ATGCAT	3 cut(s)	705, 823, 1050

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.