Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0003723

Physical Location & Seq

Genomic Coordinates Reverse (-)

10094714 .. 10099436

Gene Structure 4723 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00169470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1146 bp

ATGAGATTCAAGAAGGGGGACAAAGTGGAAGTGCTAAGCCAAAAGGAGGTGCCTTCAGGAGCATGGCAGTGCGGTGTGATCGTCTCAGGCAATGGCCACACTTACGGTGTTAGATATGATTGGTCTCCTAACGTGGAAGGTGAGGCAATAGTGGAGAGAGTCCCAAGAAAGGCTATTAGGCCTTGCCCTCCGCCAGTTCATAGTGCAGATAGTTGGGGGGTTGGCCATGTTGTTGAGGTCTTTGATGTCGGTTTCTGGAAGATGGCTAAGGTAGTGAAGGTTTTTGATGAAAACTATTACCTGGCTAGGCTACTTGGATCATCCGAGGAGTTTAGAATGCACAAATCTAGGATCAGGGTGCGTCAATTGTTGAAAGATGACAAATGGAATGTGATTGGAAAGGTAAATTTAAGAATAAAGCTGCCATCGAGAAATGAATATTCACCTTCTCTTGAAAACAGCAGTTGTCAGGAATCCTATATTGTCTCATCTACATCATTAAAGAGAGCTTGTCCGTACACTGAAGCATATCCCCGGAAGATGAGAGCTATGGAGAAAGAGTGTGAGCACCAACAAGTTTTTTCTAGGTCCCCATCTTCACTGCTCAAAAAGGTAGATGTTGTTGCTTACCCGAGAGAAAAGCTGGGTGAAAAATACATGCACGCTTCCTTTCTTTGTCCTACAACTCGATATTTTGAAAAGGAGAACAGAAATTTGAATGGTGCTAATTCATGTTTTGAAAGAAGCTCGGAAGTTAGTGATTGTGATAGTGATGCAGGCTCTATTGAGTCTGTTGGTAGTTGTAGTGTTAATGGTAACAATTCAAGTAAGACATCTGGTTATGATTTAGCAGGTAATAGTGAAGAAGCAGATACCCTTTGTAGCGATGCAGACTCTTTTTCTAGTGGTGCAGATCTGCAAGAAAATGTTTCCCTTCCTCTGAAACATGATATAGCCGCAACAATCCATAGGTTAGAGTTGCATGCTTACCGCCGGACTCTGATGGTAATGCATGCTTCGGGGTCCTTAAGTTGGGAACAAGAAGATTTATTGACAACACTCCGTATGTCTTTACACATTACGAATGATGAACATTTGATGGAAGGCCAAGGTTGGAGGCTGGTTGCCTTGCTTCCAAAGGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Agenet ENT

Protein Analysis

381

Amino Acids

42.86

Weight (kDa)

6.87

Isoelectric Point (pI)

50.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Agenet	PF05641	6 - 64	5.8e-17	Agenet domain
ENT	PF03735	320 - 366	3.7e-11	ENT domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003723)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25590 AT4G32440 AT4G32440 AT4G32440
fragaria_vesca	FvH4_2g29660 FvH4_2g29660 FvH4_2g29660
malus_domestica	MD08G1144800.v1.1 MD15G1119500.v1.1
prunus_persica	Prupe.1G473100_v2.0.a1 Prupe.1G473100_v2.0.a1 Prupe.1G473100_v2.0.a1 Prupe.1G473100_v2.0.a1
pyrus_communis	pycom08g12210 pycom15g10850
rosa_chinensis	RchiOBHm_Chr6g0298631 RchiOBHm_Chr7g0226201
rosa_laevigata	RLG00000001759
rosa_multiflora	Rmu_co8115666.1_g000001 Rmu_sc0001350.1_g000005 Rmu_sc0034903.1_g000002
rosa_roxburghii	Rroxscaffold_3G00233130 Rroxscaffold_7G00169470
rosa_rugosa	Rorug07G0235600 Rorug07G0235700
rosa_samantha	Rh6AG393200 Rh6BG401000 Rh6DG393600 Rh7AG382500 Rh7BG369600 Rh7CG402000 Rh7DG380800
rosa_wichuraiana	Rw6G034380 Rw7G032050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	842
AccB1I	GGYRCC	1 cut(s)	49
AciI	CCGC	4 cut(s)	72, 191, 957, 991
AclWI	GGATC	2 cut(s)	325, 359
AcoI	YGGCCR	2 cut(s)	94, 223
AcsI	RAATTY	2 cut(s)	406, 712
AcuI	CTGAAG	2 cut(s)	39, 543
AfaI	GTAC	1 cut(s)	518
AfiI	CCNNNNNNNGG	3 cut(s)	46, 169, 1032
AflII	CTTAAG	1 cut(s)	1027
AgsI	TTSAA	7 cut(s)	10, 373, 455, 698, 718, 740, 825
AjnI	CCWGG	1 cut(s)	300
AluBI	AGCT	5 cut(s)	421, 509, 548, 643, 747
AluI	AGCT	5 cut(s)	421, 509, 548, 643, 747
Alw21I	GWGCWC	1 cut(s)	570
Alw26I	GTCTC	3 cut(s)	88, 129, 490
AlwI	GGATC	2 cut(s)	325, 359
Ama87I	CYCGRG	1 cut(s)	631
AoxI	GGCC	4 cut(s)	94, 179, 223, 1105
ApeKI	GCWGC	1 cut(s)	421
ApoI	RAATTY	2 cut(s)	406, 712
AspS9I	GGNCC	2 cut(s)	588, 1023
AsuC2I	CCSGG	1 cut(s)	535
AsuHPI	GGTGA	3 cut(s)	152, 435, 659
AvaI	CYCGRG	1 cut(s)	631
AvaII	GGWCC	2 cut(s)	588, 1023
BalI	TGGCCA	2 cut(s)	96, 225
BanI	GGYRCC	1 cut(s)	49
Bbv12I	GWGCWC	1 cut(s)	570
BbvI	GCAGC	1 cut(s)	408
BccI	CCATC	5 cut(s)	256, 433, 601, 997, 1093
BciT130I	CCWGG	1 cut(s)	302
BcnI	CCSGG	1 cut(s)	535
BcoDI	GTCTC	3 cut(s)	88, 129, 490
BfaI	CTAG	5 cut(s)	306, 348, 585, 903, 1144
BfrI	CTTAAG	1 cut(s)	1027
BfuAI	ACCTGC	1 cut(s)	842
BglII	AGATCT	1 cut(s)	913
BisI	GCNGC	2 cut(s)	422, 957
BlpI	GCTNAGC	1 cut(s)	35
BlsI	GCNGC	2 cut(s)	423, 958
Bme1390I	CCNGG	2 cut(s)	302, 535
Bme18I	GGWCC	2 cut(s)	588, 1023
BmeT110I	CYCGRG	1 cut(s)	631
BmgT120I	GGNCC	2 cut(s)	588, 1023
BmiI	GGNNCC	3 cut(s)	51, 590, 1024
BmrFI	CCNGG	2 cut(s)	302, 535
BmsI	GCATC	2 cut(s)	763, 877
Bpu10I	CCTNAGC	1 cut(s)	267
Bpu1102I	GCTNAGC	1 cut(s)	35
BpuMI	CCSGG	1 cut(s)	535
BsaI	GGTCTC	1 cut(s)	129
BsaJI	CCNNGG	3 cut(s)	324, 533, 1108
BsaXI	ACNNNNNCTCC	2 cut(s)	545, 575
Bsc4I	CCNNNNNNNGG	3 cut(s)	46, 169, 1032
Bse1I	ACTGG	1 cut(s)	194
Bse3DI	GCAATG	1 cut(s)	97
BseBI	CCWGG	1 cut(s)	302
BseDI	CCNNGG	3 cut(s)	324, 533, 1108
BseGI	GGATG	1 cut(s)	320
BseLI	CCNNNNNNNGG	3 cut(s)	46, 169, 1032
BseMI	GCAATG	1 cut(s)	97
BseMII	CTCAG	1 cut(s)	99
BseNI	ACTGG	1 cut(s)	194
BseRI	GAGGAG	1 cut(s)	341
BseXI	GCAGC	1 cut(s)	408
BseYI	CCCAGC	1 cut(s)	643
BsgI	GTGCAG	2 cut(s)	225, 930
BshFI	GGCC	4 cut(s)	96, 181, 225, 1107
BshNI	GGYRCC	1 cut(s)	49
BsiHKAI	GWGCWC	1 cut(s)	570
BsiHKCI	CYCGRG	1 cut(s)	631
BsiSI	CCGG	2 cut(s)	535, 994
BslFI	GGGAC	3 cut(s)	32, 146, 574
BslI	CCNNNNNNNGG	3 cut(s)	46, 169, 1032
BsmAI	GTCTC	3 cut(s)	88, 129, 490
BsmBI	CGTCTC	1 cut(s)	88
BsmFI	GGGAC	3 cut(s)	32, 146, 574
BsmI	GAATGC	1 cut(s)	342
BsnI	GGCC	4 cut(s)	96, 181, 225, 1107
Bso31I	GGTCTC	1 cut(s)	129
BsoBI	CYCGRG	1 cut(s)	631
Bsp1286I	GDGCHC	1 cut(s)	570
Bsp143I	GATC	4 cut(s)	78, 317, 351, 913
Bsp1720I	GCTNAGC	1 cut(s)	35
BspACI	CCGC	4 cut(s)	72, 191, 957, 991
BspANI	GGCC	4 cut(s)	96, 181, 225, 1107
BspCNI	CTCAG	1 cut(s)	98
BspLI	GGNNCC	3 cut(s)	51, 590, 1024
BspMI	ACCTGC	1 cut(s)	842
BspPI	GGATC	2 cut(s)	325, 359
BspT107I	GGYRCC	1 cut(s)	49
BspTI	CTTAAG	1 cut(s)	1027
BspTNI	GGTCTC	1 cut(s)	129
BsrDI	GCAATG	1 cut(s)	97
BsrI	ACTGG	1 cut(s)	194
BssECI	CCNNGG	3 cut(s)	324, 533, 1108
BssMI	GATC	4 cut(s)	78, 317, 351, 913
BssT1I	CCWWGG	1 cut(s)	1108
Bst2UI	CCWGG	1 cut(s)	302
Bst4CI	ACNGT	1 cut(s)	107
BstAFI	CTTAAG	1 cut(s)	1027
BstC8I	GCNNGC	4 cut(s)	663, 778, 984, 1014
BstDEI	CTNAG	3 cut(s)	35, 85, 267
BstF5I	GGATG	1 cut(s)	320
BstKTI	GATC	4 cut(s)	81, 320, 354, 916
BstMAI	GTCTC	3 cut(s)	88, 129, 490
BstMBI	GATC	4 cut(s)	78, 317, 351, 913
BstNI	CCWGG	1 cut(s)	302
BstNSI	RCATGY	3 cut(s)	661, 986, 1016
BstSCI	CCNGG	2 cut(s)	300, 533
BstV1I	GCAGC	1 cut(s)	408
BstX2I	RGATCY	1 cut(s)	913
BstYI	RGATCY	1 cut(s)	913
BsuRI	GGCC	4 cut(s)	96, 181, 225, 1107
BtgZI	GCGATG	1 cut(s)	900
BtsCI	GGATG	1 cut(s)	320
BtsI	GCAGTG	2 cut(s)	74, 599
BtsIMutI	CAGTG	3 cut(s)	74, 519, 599
BveI	ACCTGC	1 cut(s)	842
Cac8I	GCNNGC	4 cut(s)	663, 778, 984, 1014
Cfr13I	GGNCC	2 cut(s)	588, 1023
CseI	GACGC	1 cut(s)	350
Csp6I	GTAC	1 cut(s)	517
CviAII	CATG	7 cut(s)	63, 227, 658, 732, 947, 983, 1013
CviQI	GTAC	1 cut(s)	517
DdeI	CTNAG	3 cut(s)	35, 85, 267
DpnI	GATC	4 cut(s)	80, 319, 353, 915
DpnII	GATC	4 cut(s)	78, 317, 351, 913
EaeI	YGGCCR	2 cut(s)	94, 223
EciI	GGCGGA	1 cut(s)	180
Eco130I	CCWWGG	1 cut(s)	1108
Eco147I	AGGCCT	1 cut(s)	181
Eco31I	GGTCTC	1 cut(s)	129
Eco47I	GGWCC	2 cut(s)	588, 1023
Eco57I	CTGAAG	2 cut(s)	39, 543
Eco88I	CYCGRG	1 cut(s)	631
EcoO109I	RGGNCCY	2 cut(s)	588, 1023
EcoRII	CCWGG	1 cut(s)	300
EcoT14I	CCWWGG	1 cut(s)	1108
EcoT22I	ATGCAT	1 cut(s)	1014
ErhI	CCWWGG	1 cut(s)	1108
Esp3I	CGTCTC	1 cut(s)	88
FaeI	CATG	7 cut(s)	66, 230, 661, 735, 950, 986, 1016
FaqI	GGGAC	3 cut(s)	32, 146, 574
FatI	CATG	7 cut(s)	62, 226, 657, 731, 946, 982, 1012
Fnu4HI	GCNGC	2 cut(s)	422, 957
FokI	GGATG	1 cut(s)	307
Fsp4HI	GCNGC	2 cut(s)	422, 957
FspBI	CTAG	5 cut(s)	306, 348, 585, 903, 1144
GluI	GCNGC	2 cut(s)	422, 957
GsaI	CCCAGC	1 cut(s)	647
HaeIII	GGCC	4 cut(s)	96, 181, 225, 1107
HapII	CCGG	2 cut(s)	535, 994
HgaI	GACGC	1 cut(s)	350
Hin1II	CATG	7 cut(s)	66, 230, 661, 735, 950, 986, 1016
HinfI	GANTC	6 cut(s)	6, 159, 473, 788, 893, 997
HpaII	CCGG	2 cut(s)	535, 994
HphI	GGTGA	3 cut(s)	152, 435, 659
Hpy166II	GTNNAC	1 cut(s)	519
Hpy188I	TCNGA	4 cut(s)	325, 751, 942, 1002
Hpy188III	TCNNGA	6 cut(s)	10, 57, 256, 429, 452, 470
Hpy8I	GTNNAC	1 cut(s)	519
HpyAV	CCTTC	7 cut(s)	7, 63, 131, 271, 456, 944, 1097
HpyCH4III	ACNGT	1 cut(s)	107
HpyCH4IV	ACGT	1 cut(s)	132
HpyCH4V	TGCA	9 cut(s)	206, 340, 661, 776, 890, 911, 919, 982, 1012
HpyF3I	CTNAG	3 cut(s)	35, 85, 267
HpySE526I	ACGT	1 cut(s)	132
Hsp92II	CATG	7 cut(s)	66, 230, 661, 735, 950, 986, 1016
Kzo9I	GATC	4 cut(s)	78, 317, 351, 913
LmnI	GCTCC	1 cut(s)	59
Lsp1109I	GCAGC	1 cut(s)	408
LweI	GCATC	2 cut(s)	763, 877
MaeI	CTAG	5 cut(s)	306, 348, 585, 903, 1144
MaeII	ACGT	1 cut(s)	132
MaeIII	GTNAC	1 cut(s)	815
MalI	GATC	4 cut(s)	80, 319, 353, 915
MboI	GATC	4 cut(s)	78, 317, 351, 913
MboII	GAAGA	5 cut(s)	271, 550, 588, 875, 1055
MfeI	CAATTG	1 cut(s)	365
MflI	RGATCY	1 cut(s)	913
MhlI	GDGCHC	1 cut(s)	570
MlsI	TGGCCA	2 cut(s)	96, 225
MluCI	AATT	5 cut(s)	365, 406, 712, 727, 820
MluNI	TGGCCA	2 cut(s)	96, 225
MlyI	GAGTC	4 cut(s)	168, 797, 887, 991
MmeI	TCCRAC	1 cut(s)	1094
MnlI	CCTC	7 cut(s)	40, 136, 198, 229, 319, 948, 1110
Mox20I	TGGCCA	2 cut(s)	96, 225
Mph1103I	ATGCAT	1 cut(s)	1014
MscI	TGGCCA	2 cut(s)	96, 225
MseI	TTAA	4 cut(s)	410, 500, 810, 1028
MslI	CAYNNNNRTG	1 cut(s)	67
Msp20I	TGGCCA	2 cut(s)	96, 225
MspCI	CTTAAG	1 cut(s)	1027
MspI	CCGG	2 cut(s)	535, 994
MspR9I	CCNGG	2 cut(s)	302, 535
MunI	CAATTG	1 cut(s)	365
Mva1269I	GAATGC	1 cut(s)	342
MvaI	CCWGG	1 cut(s)	302
NciI	CCSGG	1 cut(s)	535
NdeII	GATC	4 cut(s)	78, 317, 351, 913
NlaIII	CATG	7 cut(s)	66, 230, 661, 735, 950, 986, 1016
NlaIV	GGNNCC	3 cut(s)	51, 590, 1024
NsiI	ATGCAT	1 cut(s)	1014
NspI	RCATGY	3 cut(s)	661, 986, 1016
PaeI	GCATGC	2 cut(s)	986, 1016
PceI	AGGCCT	1 cut(s)	181
PctI	GAATGC	1 cut(s)	342
PfeI	GAWTC	2 cut(s)	6, 473
PkrI	GCNGC	2 cut(s)	423, 958
PleI	GAGTC	4 cut(s)	167, 796, 887, 991
PpsI	GAGTC	4 cut(s)	167, 796, 887, 991
PpuMI	RGGWCCY	2 cut(s)	588, 1023
Psp5II	RGGWCCY	2 cut(s)	588, 1023
Psp6I	CCWGG	1 cut(s)	300
PspFI	CCCAGC	1 cut(s)	643
PspGI	CCWGG	1 cut(s)	300
PspN4I	GGNNCC	3 cut(s)	51, 590, 1024
PspPI	GGNCC	2 cut(s)	588, 1023
PspPPI	RGGWCCY	2 cut(s)	588, 1023
PsuI	RGATCY	1 cut(s)	913
RsaI	GTAC	1 cut(s)	518
RsaNI	GTAC	1 cut(s)	517
RseI	CAYNNNNRTG	1 cut(s)	67
SaqAI	TTAA	4 cut(s)	410, 500, 810, 1028
SatI	GCNGC	2 cut(s)	422, 957
Sau3AI	GATC	4 cut(s)	78, 317, 351, 913
Sau96I	GGNCC	2 cut(s)	588, 1023
SchI	GAGTC	4 cut(s)	168, 797, 887, 991
ScrFI	CCNGG	2 cut(s)	302, 535
SduI	GDGCHC	1 cut(s)	570
SfaNI	GCATC	2 cut(s)	763, 877
SinI	GGWCC	2 cut(s)	588, 1023
SmiMI	CAYNNNNRTG	1 cut(s)	67
SmlI	CTYRAG	1 cut(s)	1027
SmoI	CTYRAG	1 cut(s)	1027
SphI	GCATGC	2 cut(s)	986, 1016
Sse9I	AATT	5 cut(s)	365, 406, 712, 727, 820
SseBI	AGGCCT	1 cut(s)	181
SsiI	CCGC	4 cut(s)	72, 191, 957, 991
SspI	AATATT	1 cut(s)	440
SspMI	CTAG	5 cut(s)	306, 348, 585, 903, 1144
StuI	AGGCCT	1 cut(s)	181
StyD4I	CCNGG	2 cut(s)	300, 533
StyI	CCWWGG	1 cut(s)	1108
TaaI	ACNGT	1 cut(s)	107
TaiI	ACGT	1 cut(s)	135
TaqI	TCGA	2 cut(s)	428, 688
TasI	AATT	5 cut(s)	365, 406, 712, 727, 820
TauI	GCSGC	1 cut(s)	959
TfiI	GAWTC	2 cut(s)	6, 473
Tru1I	TTAA	4 cut(s)	410, 500, 810, 1028
Tru9I	TTAA	4 cut(s)	410, 500, 810, 1028
TscAI	CASTG	3 cut(s)	74, 526, 606
TseI	GCWGC	1 cut(s)	421
TspDTI	ATGAA	5 cut(s)	188, 303, 450, 720, 1104
TspGWI	ACGGA	2 cut(s)	504, 1052
TspRI	CASTG	3 cut(s)	74, 526, 606
Vha464I	CTTAAG	1 cut(s)	1027
VpaK11BI	GGWCC	2 cut(s)	588, 1023
XapI	RAATTY	2 cut(s)	406, 712
XceI	RCATGY	3 cut(s)	661, 986, 1016
XspI	CTAG	5 cut(s)	306, 348, 585, 903, 1144
Zsp2I	ATGCAT	1 cut(s)	1014

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.