Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0003723

Physical Location & Seq

Genomic Coordinates Forward (+)

39523483 .. 39528163

Gene Structure 4681 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG369600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1353 bp

ATGACTGCCCAGAAGCGCGCTGAACAATCGATATCAATATTCTTCTCATCCCAGTCGAATTTTGTAACATCGCAAGGCAGGGTCTCAGGATCTTACATTGCAATCATGAGATTCAAGAAAGGGAGCAAGGTGGAAGTACTGAACGAAAAGGAGGTGCCTTCAGGAGCATGGCTGTGCGCTGTGATTATATCAGGCAATGGACACACTTACAGTGTGAGGTATGATTGGTCTCCTAACTGGGAAGGTCAGGCAGTTATTGAGAGAGTCCTGCGGAAGGCTATTAGGCCTTGTCCTCCGCCTCTTCAAGGTGCAGATTGTTGGGCAGTCGGTGATGTTGTTGAGGTCTTTGATGTTGGTTTCTGGAAGATGGCTAACATAGTGAAGGTTTTTGATGAAAACTATTACTTGGCTAGGCTACTTGGATCATTTGAGGAGTTTAGAATCCACAAATCTAGGATCAGGGTGCGTCAAGTTTTGAAAGATGAGGAATGGATTGTGATAGGAAAGGGTCTGGGATCAGCTTACCACAATCATACGAGTTCTCCAGTCTCACGAATGAATTTAAGAATAAAGCTGCCCGGTGGAAATGATTGTTTACCTCCTTCGGAAAACAACAGTTGTGAGGATTCCCATATTGTCTCCTCGGCATCATTAAAGAGACCTTCTCAATGTTGCTCTGTTTATACCGAAGCATATCCCCGAAAGATAAGAGCTATTGAGAAAGAATCCGGGCGGCAACAAGTTTTCTCTAGGTCCCCATCTTCCTTGCTTGAGAAGGTAGATGCTGTTGCTTACCCAAGAGAAAATCTGGCTGAAAAATACGTGCACGCTTCCTTTATTTGCCCTTCCACTCAATATTGTGAAAATGAGAAGGGAATTTTAAATGGTGCCAATTCATGTTTTGAAAGAAGCTCGGATGGTGTTTTTGATAGTGATGCATGCTCTATTGAATCTGTTGGTAGTTGTAGTGTTATTAGTAACAGTTCAAATAAGTTGTCCGGGTATAATCTAGCAGGTCACAGTGAAGATGAAGATACCCTTTGTAGTGATGCAGACTCTTTTTCTGGTGGCGCTGATGTGCAAGAATTTAATTCCTTTCCTCTGAAAGGAGATGTAACAGCAAGAGACTCTAGGTCGGAGTTGCATGCTTATCGCCGTACTCTGATGTTAATGCATGCTTCAGGTTCTTTAAGTTGGGAACAAGAAGATTTATTGACAAACCTCCGTATGTCCTTACACATTTCCAATGATGAACATTTGATGGAAGTTCTTAAATGTGGTTCAGTTTGGGTCTGCTGGGAATTGTTGACACATCTTGTGCCAAAGCAGAAGAGAACTGAAAAGTGCCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Agenet ENT

Protein Analysis

450

Amino Acids

50.26

Weight (kDa)

6.34

Isoelectric Point (pI)

53.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Agenet	PF05641	41 - 99	2.2e-16	Agenet domain
ENT	PF03735	380 - 422	8.5e-08	ENT domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003723)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25590 AT4G32440 AT4G32440 AT4G32440
fragaria_vesca	FvH4_2g29660 FvH4_2g29660 FvH4_2g29660
malus_domestica	MD08G1144800.v1.1 MD15G1119500.v1.1
prunus_persica	Prupe.1G473100_v2.0.a1 Prupe.1G473100_v2.0.a1 Prupe.1G473100_v2.0.a1 Prupe.1G473100_v2.0.a1
pyrus_communis	pycom08g12210 pycom15g10850
rosa_chinensis	RchiOBHm_Chr6g0298631 RchiOBHm_Chr7g0226201
rosa_laevigata	RLG00000001759
rosa_multiflora	Rmu_co8115666.1_g000001 Rmu_sc0001350.1_g000005 Rmu_sc0034903.1_g000002
rosa_roxburghii	Rroxscaffold_3G00233130 Rroxscaffold_7G00169470
rosa_rugosa	Rorug07G0235600 Rorug07G0235700
rosa_samantha	Rh6AG393200 Rh6BG401000 Rh6DG393600 Rh7AG382500 Rh7BG369600 Rh7CG402000 Rh7DG380800
rosa_wichuraiana	Rw6G034380 Rw7G032050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1004
AccB1I	GGYRCC	2 cut(s)	154, 887
AccII	CGCG	1 cut(s)	18
AciI	CCGC	3 cut(s)	271, 296, 733
AclWI	GGATC	4 cut(s)	97, 430, 464, 523
AcsI	RAATTY	4 cut(s)	58, 559, 876, 1085
AcuI	CTGAAG	2 cut(s)	144, 1164
AfaI	GTAC	2 cut(s)	138, 1159
AfiI	CCNNNNNNNGG	3 cut(s)	274, 305, 1106
AgsI	TTSAA	6 cut(s)	115, 305, 478, 905, 950, 987
AhdI	GACNNNNNGTC	1 cut(s)	1132
AluBI	AGCT	4 cut(s)	521, 574, 713, 912
AluI	AGCT	4 cut(s)	521, 574, 713, 912
Alw21I	GWGCWC	1 cut(s)	828
Alw26I	GTCTC	6 cut(s)	88, 234, 553, 643, 652, 1119
Alw44I	GTGCAC	1 cut(s)	824
AlwI	GGATC	4 cut(s)	97, 430, 464, 523
AoxI	GGCC	1 cut(s)	284
ApaLI	GTGCAC	1 cut(s)	824
ApeKI	GCWGC	1 cut(s)	574
ApoI	RAATTY	4 cut(s)	58, 559, 876, 1085
ArsI	GACNNNNNNTTYG	2 cut(s)	980, 1012
AspLEI	GCGC	4 cut(s)	18, 20, 179, 1073
AspS9I	GGNCC	1 cut(s)	753
AsuC2I	CCSGG	3 cut(s)	579, 730, 1000
AsuHPI	GGTGA	1 cut(s)	341
AvaII	GGWCC	1 cut(s)	753
BaeGI	GKGCMC	1 cut(s)	828
BanI	GGYRCC	2 cut(s)	154, 887
Bbv12I	GWGCWC	1 cut(s)	828
BbvI	GCAGC	1 cut(s)	561
BccI	CCATC	4 cut(s)	361, 766, 911, 1255
BceAI	ACGGC	1 cut(s)	1140
BcgI	CGANNNNNNTGC	2 cut(s)	1133, 1167
BcnI	CCSGG	3 cut(s)	579, 730, 1000
BcoDI	GTCTC	6 cut(s)	88, 234, 553, 643, 652, 1119
BfaI	CTAG	5 cut(s)	411, 453, 750, 1010, 1131
BfoI	RGCGCY	1 cut(s)	1074
BfuAI	ACCTGC	1 cut(s)	1004
BisI	GCNGC	2 cut(s)	575, 734
BlsI	GCNGC	2 cut(s)	576, 735
BmcAI	AGTACT	1 cut(s)	138
Bme1390I	CCNGG	3 cut(s)	579, 730, 1000
Bme18I	GGWCC	1 cut(s)	753
BmeRI	GACNNNNNGTC	1 cut(s)	1132
BmgT120I	GGNCC	1 cut(s)	753
BmiI	GGNNCC	3 cut(s)	156, 755, 889
BmrFI	CCNGG	3 cut(s)	579, 730, 1000
BmrI	ACTGGG	2 cut(s)	46, 247
BmsI	GCATC	4 cut(s)	656, 772, 925, 1039
BmuI	ACTGGG	2 cut(s)	46, 247
BplI	GAGNNNNNCTC	2 cut(s)	649, 681
BpmI	CTGGAG	1 cut(s)	528
BpuEI	CTTGAG	1 cut(s)	791
BpuMI	CCSGG	3 cut(s)	579, 730, 1000
Bsa29I	ATCGAT	1 cut(s)	29
BsaAI	YACGTR	1 cut(s)	823
BsaI	GGTCTC	3 cut(s)	88, 234, 652
BsaJI	CCNNGG	1 cut(s)	642
BsaXI	ACNNNNNCTCC	2 cut(s)	526, 556
Bsc4I	CCNNNNNNNGG	3 cut(s)	274, 305, 1106
Bse1I	ACTGG	3 cut(s)	52, 242, 545
Bse3DI	GCAATG	2 cut(s)	96, 202
BseCI	ATCGAT	1 cut(s)	29
BseDI	CCNNGG	1 cut(s)	642
BseGI	GGATG	2 cut(s)	47, 922
BseLI	CCNNNNNNNGG	3 cut(s)	274, 305, 1106
BseMI	GCAATG	2 cut(s)	96, 202
BseMII	CTCAG	1 cut(s)	99
BseNI	ACTGG	3 cut(s)	52, 242, 545
BsePI	GCGCGC	1 cut(s)	16
BseRI	GAGGAG	2 cut(s)	446, 631
BseSI	GKGCMC	1 cut(s)	828
BseXI	GCAGC	1 cut(s)	561
BseYI	CCCAGC	1 cut(s)	1296
BsgI	GTGCAG	1 cut(s)	330
Bsh1236I	CGCG	1 cut(s)	18
BshFI	GGCC	1 cut(s)	286
BshNI	GGYRCC	2 cut(s)	154, 887
BshVI	ATCGAT	1 cut(s)	29
BsiHKAI	GWGCWC	1 cut(s)	828
BsiSI	CCGG	3 cut(s)	579, 729, 999
BslFI	GGGAC	1 cut(s)	739
BslI	CCNNNNNNNGG	3 cut(s)	274, 305, 1106
BsmAI	GTCTC	6 cut(s)	88, 234, 553, 643, 652, 1119
BsmFI	GGGAC	1 cut(s)	739
BsnI	GGCC	1 cut(s)	286
Bso31I	GGTCTC	3 cut(s)	88, 234, 652
Bsp1286I	GDGCHC	1 cut(s)	828
Bsp143I	GATC	4 cut(s)	89, 422, 456, 515
BspACI	CCGC	3 cut(s)	271, 296, 733
BspANI	GGCC	1 cut(s)	286
BspCNI	CTCAG	1 cut(s)	98
BspDI	ATCGAT	1 cut(s)	29
BspFNI	CGCG	1 cut(s)	18
BspHI	TCATGA	1 cut(s)	105
BspLI	GGNNCC	3 cut(s)	156, 755, 889
BspMI	ACCTGC	1 cut(s)	1004
BspPI	GGATC	4 cut(s)	97, 430, 464, 523
BspT107I	GGYRCC	2 cut(s)	154, 887
BspTNI	GGTCTC	3 cut(s)	88, 234, 652
BsrDI	GCAATG	2 cut(s)	96, 202
BsrI	ACTGG	3 cut(s)	52, 242, 545
BssECI	CCNNGG	1 cut(s)	642
BssHII	GCGCGC	1 cut(s)	16
BssMI	GATC	4 cut(s)	89, 422, 456, 515
Bst4CI	ACNGT	4 cut(s)	212, 617, 983, 1022
Bst6I	CTCTTC	2 cut(s)	306, 1325
BstBAI	YACGTR	1 cut(s)	823
BstC8I	GCNNGC	5 cut(s)	18, 828, 940, 1146, 1176
BstDEI	CTNAG	1 cut(s)	85
BstENI	CCTNNNNNAGG	3 cut(s)	272, 303, 1104
BstF5I	GGATG	2 cut(s)	47, 922
BstFNI	CGCG	1 cut(s)	18
BstH2I	RGCGCY	1 cut(s)	1074
BstHHI	GCGC	4 cut(s)	18, 20, 179, 1073
BstKTI	GATC	4 cut(s)	92, 425, 459, 518
BstMAI	GTCTC	6 cut(s)	88, 234, 553, 643, 652, 1119
BstMBI	GATC	4 cut(s)	89, 422, 456, 515
BstNSI	RCATGY	3 cut(s)	942, 1148, 1178
BstSCI	CCNGG	3 cut(s)	577, 728, 998
BstSLI	GKGCMC	1 cut(s)	828
BstUI	CGCG	1 cut(s)	18
BstV1I	GCAGC	1 cut(s)	561
BstX2I	RGATCY	1 cut(s)	89
BstYI	RGATCY	1 cut(s)	89
Bsu15I	ATCGAT	1 cut(s)	29
BsuRI	GGCC	1 cut(s)	286
BsuTUI	ATCGAT	1 cut(s)	29
BtgZI	GCGATG	1 cut(s)	54
BtsCI	GGATG	2 cut(s)	47, 922
BtsIMutI	CAGTG	2 cut(s)	217, 1027
BveI	ACCTGC	1 cut(s)	1004
Cac8I	GCNNGC	5 cut(s)	18, 828, 940, 1146, 1176
CciI	TCATGA	1 cut(s)	105
CfoI	GCGC	4 cut(s)	18, 20, 179, 1073
Cfr13I	GGNCC	1 cut(s)	753
ClaI	ATCGAT	1 cut(s)	29
CseI	GACGC	1 cut(s)	455
Csp6I	GTAC	2 cut(s)	137, 1158
CviAII	CATG	6 cut(s)	106, 168, 897, 939, 1145, 1175
CviQI	GTAC	2 cut(s)	137, 1158
DdeI	CTNAG	1 cut(s)	85
DpnI	GATC	4 cut(s)	91, 424, 458, 517
DpnII	GATC	4 cut(s)	89, 422, 456, 515
DraI	TTTAAA	1 cut(s)	882
DriI	GACNNNNNGTC	1 cut(s)	1132
Eam1104I	CTCTTC	2 cut(s)	306, 1325
Eam1105I	GACNNNNNGTC	1 cut(s)	1132
EarI	CTCTTC	2 cut(s)	306, 1325
EciI	GGCGGA	1 cut(s)	285
Eco147I	AGGCCT	1 cut(s)	286
Eco31I	GGTCTC	3 cut(s)	88, 234, 652
Eco32I	GATATC	1 cut(s)	33
Eco47I	GGWCC	1 cut(s)	753
Eco57I	CTGAAG	2 cut(s)	144, 1164
EcoNI	CCTNNNNNAGG	3 cut(s)	272, 303, 1104
EcoO109I	RGGNCCY	1 cut(s)	753
EcoRV	GATATC	1 cut(s)	33
EcoT22I	ATGCAT	2 cut(s)	940, 1176
FaeI	CATG	6 cut(s)	109, 171, 900, 942, 1148, 1178
FalI	AAGNNNNNCTT	2 cut(s)	1023, 1055
FaqI	GGGAC	1 cut(s)	739
FatI	CATG	6 cut(s)	105, 167, 896, 938, 1144, 1174
Fnu4HI	GCNGC	2 cut(s)	575, 734
FokI	GGATG	2 cut(s)	34, 929
Fsp4HI	GCNGC	2 cut(s)	575, 734
FspBI	CTAG	5 cut(s)	411, 453, 750, 1010, 1131
GlaI	GCGC	4 cut(s)	17, 19, 178, 1072
GluI	GCNGC	2 cut(s)	575, 734
GsaI	CCCAGC	1 cut(s)	1300
GsuI	CTGGAG	1 cut(s)	528
HaeII	RGCGCY	1 cut(s)	1074
HaeIII	GGCC	1 cut(s)	286
HapII	CCGG	3 cut(s)	579, 729, 999
HgaI	GACGC	1 cut(s)	455
HhaI	GCGC	4 cut(s)	18, 20, 179, 1073
Hin1II	CATG	6 cut(s)	109, 171, 900, 942, 1148, 1178
Hin6I	GCGC	4 cut(s)	16, 18, 177, 1071
HinP1I	GCGC	4 cut(s)	16, 18, 177, 1071
HincII	GTYRAC	1 cut(s)	1308
HindII	GTYRAC	1 cut(s)	1308
HinfI	GANTC	8 cut(s)	111, 264, 441, 626, 725, 950, 1055, 1127
HpaII	CCGG	3 cut(s)	579, 729, 999
HphI	GGTGA	1 cut(s)	341
Hpy166II	GTNNAC	3 cut(s)	596, 826, 1308
Hpy188I	TCNGA	5 cut(s)	607, 916, 1104, 1138, 1164
Hpy188III	TCNNGA	6 cut(s)	87, 106, 115, 162, 361, 552
Hpy8I	GTNNAC	3 cut(s)	596, 826, 1308
HpyAV	CCTTC	9 cut(s)	168, 236, 268, 376, 612, 672, 769, 855, 865
HpyCH4III	ACNGT	4 cut(s)	212, 617, 983, 1022
HpyCH4IV	ACGT	1 cut(s)	822
HpyCH4V	TGCA	8 cut(s)	101, 311, 826, 938, 1052, 1081, 1144, 1174
HpyF3I	CTNAG	1 cut(s)	85
HpySE526I	ACGT	1 cut(s)	822
Hsp92II	CATG	6 cut(s)	109, 171, 900, 942, 1148, 1178
HspAI	GCGC	4 cut(s)	16, 18, 177, 1071
Kzo9I	GATC	4 cut(s)	89, 422, 456, 515
LmnI	GCTCC	2 cut(s)	123, 164
Lsp1109I	GCAGC	1 cut(s)	561
LweI	GCATC	4 cut(s)	656, 772, 925, 1039
MaeI	CTAG	5 cut(s)	411, 453, 750, 1010, 1131
MaeII	ACGT	1 cut(s)	822
MaeIII	GTNAC	4 cut(s)	64, 977, 1016, 1114
MalI	GATC	4 cut(s)	91, 424, 458, 517
MboI	GATC	4 cut(s)	89, 422, 456, 515
MboII	GAAGA	8 cut(s)	34, 293, 376, 753, 1037, 1043, 1217, 1342
MflI	RGATCY	1 cut(s)	89
MhlI	GDGCHC	1 cut(s)	828
MluCI	AATT	7 cut(s)	58, 559, 876, 892, 1085, 1090, 1301
MlyI	GAGTC	3 cut(s)	273, 1049, 1121
MmeI	TCCRAC	1 cut(s)	1116
Mph1103I	ATGCAT	2 cut(s)	940, 1176
MseI	TTAA	7 cut(s)	563, 653, 881, 1089, 1169, 1190, 1272
MslI	CAYNNNNRTG	1 cut(s)	172
MspI	CCGG	3 cut(s)	579, 729, 999
MspR9I	CCNGG	3 cut(s)	579, 730, 1000
MvnI	CGCG	1 cut(s)	18
NciI	CCSGG	3 cut(s)	579, 730, 1000
NdeII	GATC	4 cut(s)	89, 422, 456, 515
NlaIII	CATG	6 cut(s)	109, 171, 900, 942, 1148, 1178
NlaIV	GGNNCC	3 cut(s)	156, 755, 889
NmeAIII	GCCGAG	1 cut(s)	623
NmuCI	GTSAC	1 cut(s)	1016
NsiI	ATGCAT	2 cut(s)	940, 1176
NspI	RCATGY	3 cut(s)	942, 1148, 1178
PaeI	GCATGC	3 cut(s)	942, 1148, 1178
PagI	TCATGA	1 cut(s)	105
PauI	GCGCGC	1 cut(s)	16
PceI	AGGCCT	1 cut(s)	286
PfeI	GAWTC	5 cut(s)	111, 441, 626, 725, 950
PkrI	GCNGC	2 cut(s)	576, 735
PleI	GAGTC	3 cut(s)	272, 1049, 1121
PpsI	GAGTC	3 cut(s)	272, 1049, 1121
Ppu21I	YACGTR	1 cut(s)	823
PpuMI	RGGWCCY	1 cut(s)	753
Psp5II	RGGWCCY	1 cut(s)	753
PspFI	CCCAGC	1 cut(s)	1296
PspN4I	GGNNCC	3 cut(s)	156, 755, 889
PspPI	GGNCC	1 cut(s)	753
PspPPI	RGGWCCY	1 cut(s)	753
PsuI	RGATCY	1 cut(s)	89
PteI	GCGCGC	1 cut(s)	16
RsaI	GTAC	2 cut(s)	138, 1159
RsaNI	GTAC	2 cut(s)	137, 1158
RseI	CAYNNNNRTG	1 cut(s)	172
SaqAI	TTAA	7 cut(s)	563, 653, 881, 1089, 1169, 1190, 1272
SatI	GCNGC	2 cut(s)	575, 734
Sau3AI	GATC	4 cut(s)	89, 422, 456, 515
Sau96I	GGNCC	1 cut(s)	753
ScaI	AGTACT	1 cut(s)	138
SchI	GAGTC	3 cut(s)	273, 1049, 1121
ScrFI	CCNGG	3 cut(s)	579, 730, 1000
SduI	GDGCHC	1 cut(s)	828
SfaNI	GCATC	4 cut(s)	656, 772, 925, 1039
SinI	GGWCC	1 cut(s)	753
SmiMI	CAYNNNNRTG	1 cut(s)	172
SmlI	CTYRAG	1 cut(s)	770
SmoI	CTYRAG	1 cut(s)	770
SphI	GCATGC	3 cut(s)	942, 1148, 1178
Sse9I	AATT	7 cut(s)	58, 559, 876, 892, 1085, 1090, 1301
SseBI	AGGCCT	1 cut(s)	286
SsiI	CCGC	3 cut(s)	271, 296, 733
SspI	AATATT	2 cut(s)	39, 857
SspMI	CTAG	5 cut(s)	411, 453, 750, 1010, 1131
StuI	AGGCCT	1 cut(s)	286
StyD4I	CCNGG	3 cut(s)	577, 728, 998
TaaI	ACNGT	4 cut(s)	212, 617, 983, 1022
TaiI	ACGT	1 cut(s)	825
TaqI	TCGA	2 cut(s)	29, 56
TasI	AATT	7 cut(s)	58, 559, 876, 892, 1085, 1090, 1301
TatI	WGTACW	1 cut(s)	136
TauI	GCSGC	1 cut(s)	736
TfiI	GAWTC	5 cut(s)	111, 441, 626, 725, 950
Tru1I	TTAA	7 cut(s)	563, 653, 881, 1089, 1169, 1190, 1272
Tru9I	TTAA	7 cut(s)	563, 653, 881, 1089, 1169, 1190, 1272
TscAI	CASTG	2 cut(s)	217, 1027
TseFI	GTSAC	1 cut(s)	1016
TseI	GCWGC	1 cut(s)	574
Tsp45I	GTSAC	1 cut(s)	1016
TspDTI	ATGAA	5 cut(s)	408, 572, 885, 1044, 1266
TspGWI	ACGGA	1 cut(s)	1214
TspRI	CASTG	2 cut(s)	217, 1027
VneI	GTGCAC	1 cut(s)	824
VpaK11BI	GGWCC	1 cut(s)	753
XagI	CCTNNNNNAGG	3 cut(s)	272, 303, 1104
XapI	RAATTY	4 cut(s)	58, 559, 876, 1085
XceI	RCATGY	3 cut(s)	942, 1148, 1178
XspI	CTAG	5 cut(s)	411, 453, 750, 1010, 1131
ZrmI	AGTACT	1 cut(s)	138
Zsp2I	ATGCAT	2 cut(s)	940, 1176

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.