Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0003723

Physical Location & Seq

Genomic Coordinates Reverse (-)

14374228 .. 14376973

Gene Structure 2746 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1144800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGAGATTCAAGAAGAGGAGCAAAGTGGAGGTACTTAGCCAAAAGGAGGCGCCTACAGGAGCATGGCGCTGTGCTGTGATTGTTTCTGGTAATGGGCACACATATAGTGTTAGCTATGATTGGTCTGGCAAGGACAGTCATGCAGATATGCAGAGAGTCTCAAGGAAGGATATCAGGCCTTGCCCTCCGCGTGTCCGAAGAGTGGAGAGTTGGGCAGTTGGTGATGTTGCCGAGTTGTTTGATGATGGTTTCTGGAAAATGGCCACGGTGTTGAAGGTCTTAGATGAAAATTATTACTTGGCTAGGCTACTTGGATCTTCTGAGGAGTTAAGAGTCCACAAGTATAGGATCCGGGCTCGCCAATTATGGAATAATGACAGATGGGTTGTGATCGGAAAGGGTCCCGACAATCAGATGAGCTCGCGAGTCCCACAAATGAATGCAAAAATAAAGTTACCCAATGGAAATGGTTGTTTACCTCCTATGTACAACATCAGTTGTCAGGATTCCCATAGTGTTTCATCTGGATCGTTGAAGAGAGCTTCTCCAGATAGCTCTTCTATTGAGGGATATTCTCGAAAGGTGAGGGCAATTGAGAAGGGGTGTGAGCGTCAAAGTGTTTTTGCTGGGTCCCCATCTTACTCGCTCAAAAAGGTAGATGCTGTTGCTTACCCGCGAGAAAATCTGGGTACTAGTCAAGATGCAGATACCCTTTCTAGTGATGCAGAGTCCTTTTGTTGCTGTAAAGATGCACAAGAAAATCTTTCCCTTCCTCTAAAAGAGGATGTAGCAGCAGGAATCCATAGATTAGAGTTGAACGCTTATCGCAGTACTCTGGTGGCAATGCATGCTTCTGGGTCCTTAAGCTGGGAACAAGAAGCGTTGTTGACAAATCTCCGTATTTCACTTCACATTTCAAATGATGAACATTTGATGGAACCAAAGAATAAGGATAAAGCATCTTCATTGAAGGAGCAACACCTTAGATACTTTACCCCAAGCTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Agenet ENT

Protein Analysis

336

Amino Acids

37.6

Weight (kDa)

8.95

Isoelectric Point (pI)

50.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Agenet	PF05641	7 - 63	1.3e-15	Agenet domain
ENT	PF03735	267 - 313	3e-12	ENT domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003723)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25590 AT4G32440 AT4G32440 AT4G32440
fragaria_vesca	FvH4_2g29660 FvH4_2g29660 FvH4_2g29660
malus_domestica	MD08G1144800.v1.1 MD15G1119500.v1.1
prunus_persica	Prupe.1G473100_v2.0.a1 Prupe.1G473100_v2.0.a1 Prupe.1G473100_v2.0.a1 Prupe.1G473100_v2.0.a1
pyrus_communis	pycom08g12210 pycom15g10850
rosa_chinensis	RchiOBHm_Chr6g0298631 RchiOBHm_Chr7g0226201
rosa_laevigata	RLG00000001759
rosa_multiflora	Rmu_co8115666.1_g000001 Rmu_sc0001350.1_g000005 Rmu_sc0034903.1_g000002
rosa_roxburghii	Rroxscaffold_3G00233130 Rroxscaffold_7G00169470
rosa_rugosa	Rorug07G0235600 Rorug07G0235700
rosa_samantha	Rh6AG393200 Rh6BG401000 Rh6DG393600 Rh7AG382500 Rh7BG369600 Rh7CG402000 Rh7DG380800
rosa_wichuraiana	Rw6G034380 Rw7G032050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	49
AccII	CGCG	3 cut(s)	190, 424, 676
AciI	CCGC	2 cut(s)	188, 674
AclWI	GGATC	4 cut(s)	322, 343, 356, 535
AcoI	YGGCCR	1 cut(s)	261
AcyI	GRCGYC	1 cut(s)	50
AfaI	GTAC	4 cut(s)	33, 488, 691, 832
AfiI	CCNNNNNNNGG	3 cut(s)	46, 202, 867
AflII	CTTAAG	1 cut(s)	862
AgsI	TTSAA	6 cut(s)	10, 274, 535, 817, 918, 970
AhlI	ACTAGT	1 cut(s)	692
AluBI	AGCT	6 cut(s)	114, 420, 542, 555, 867, 1002
AluI	AGCT	6 cut(s)	114, 420, 542, 555, 867, 1002
Alw21I	GWGCWC	1 cut(s)	422
Alw26I	GTCTC	1 cut(s)	163
AlwI	GGATC	4 cut(s)	322, 343, 356, 535
AoxI	GGCC	2 cut(s)	176, 261
ApeKI	GCWGC	2 cut(s)	791, 1002
AspLEI	GCGC	2 cut(s)	52, 69
AspS9I	GGNCC	3 cut(s)	401, 630, 858
AsuC2I	CCSGG	1 cut(s)	353
AsuHPI	GGTGA	2 cut(s)	233, 595
AvaII	GGWCC	3 cut(s)	401, 630, 858
BaeGI	GKGCMC	1 cut(s)	99
BalI	TGGCCA	1 cut(s)	263
BamHI	GGATCC	1 cut(s)	348
BanI	GGYRCC	1 cut(s)	49
BanII	GRGCYC	2 cut(s)	358, 422
Bbv12I	GWGCWC	1 cut(s)	422
BbvI	GCAGC	2 cut(s)	803, 989
BccI	CCATC	4 cut(s)	239, 375, 643, 928
BcnI	CCSGG	1 cut(s)	353
BcoDI	GTCTC	1 cut(s)	163
BcuI	ACTAGT	1 cut(s)	692
BfaI	CTAG	3 cut(s)	303, 693, 717
BfmI	CTRYAG	1 cut(s)	54
BfoI	RGCGCY	2 cut(s)	53, 70
BfrI	CTTAAG	1 cut(s)	862
BisI	GCNGC	2 cut(s)	792, 1003
BlsI	GCNGC	2 cut(s)	793, 1004
BmcAI	AGTACT	1 cut(s)	832
Bme1390I	CCNGG	1 cut(s)	353
Bme18I	GGWCC	3 cut(s)	401, 630, 858
BmgT120I	GGNCC	3 cut(s)	401, 630, 858
BmiI	GGNNCC	8 cut(s)	51, 350, 402, 403, 631, 632, 859, 939
BmrFI	CCNGG	1 cut(s)	353
BmsI	GCATC	5 cut(s)	649, 691, 712, 739, 968
BplI	GAGNNNNNCTC	2 cut(s)	529, 561
BpmI	CTGGAG	1 cut(s)	531
BpuEI	CTTGAG	1 cut(s)	145
BpuMI	CCSGG	1 cut(s)	353
BsaHI	GRCGYC	1 cut(s)	50
BsaJI	CCNNGG	1 cut(s)	264
Bsc4I	CCNNNNNNNGG	3 cut(s)	46, 202, 867
Bse3DI	GCAATG	1 cut(s)	849
BseDI	CCNNGG	1 cut(s)	264
BseGI	GGATG	1 cut(s)	790
BseLI	CCNNNNNNNGG	3 cut(s)	46, 202, 867
BseMI	GCAATG	1 cut(s)	849
BseMII	CTCAG	1 cut(s)	312
BseRI	GAGGAG	2 cut(s)	31, 338
BseSI	GKGCMC	1 cut(s)	99
BseXI	GCAGC	2 cut(s)	803, 989
BseYI	CCCAGC	2 cut(s)	626, 867
Bsh1236I	CGCG	3 cut(s)	190, 424, 676
BshFI	GGCC	2 cut(s)	178, 263
BshNI	GGYRCC	1 cut(s)	49
BsiHKAI	GWGCWC	1 cut(s)	422
BsiSI	CCGG	1 cut(s)	352
BslFI	GGGAC	3 cut(s)	387, 413, 616
BslI	CCNNNNNNNGG	3 cut(s)	46, 202, 867
BsmAI	GTCTC	1 cut(s)	163
BsmFI	GGGAC	3 cut(s)	387, 413, 616
BsmI	GAATGC	1 cut(s)	445
BsnI	GGCC	2 cut(s)	178, 263
Bsp1286I	GDGCHC	3 cut(s)	99, 358, 422
Bsp1407I	TGTACA	1 cut(s)	486
Bsp143I	GATC	4 cut(s)	314, 348, 390, 527
Bsp68I	TCGCGA	1 cut(s)	424
BspACI	CCGC	2 cut(s)	188, 674
BspANI	GGCC	2 cut(s)	178, 263
BspCNI	CTCAG	1 cut(s)	313
BspFNI	CGCG	3 cut(s)	190, 424, 676
BspLI	GGNNCC	8 cut(s)	51, 350, 402, 403, 631, 632, 859, 939
BspPI	GGATC	4 cut(s)	322, 343, 356, 535
BspQI	GCTCTTC	1 cut(s)	562
BspT107I	GGYRCC	1 cut(s)	49
BspTI	CTTAAG	1 cut(s)	862
BsrDI	GCAATG	1 cut(s)	849
BsrGI	TGTACA	1 cut(s)	486
BssECI	CCNNGG	1 cut(s)	264
BssMI	GATC	4 cut(s)	314, 348, 390, 527
BssNI	GRCGYC	1 cut(s)	50
Bst4CI	ACNGT	2 cut(s)	137, 268
Bst6I	CTCTTC	4 cut(s)	8, 193, 530, 562
BstACI	GRCGYC	1 cut(s)	50
BstAFI	CTTAAG	1 cut(s)	862
BstAPI	GCANNNNNTGC	1 cut(s)	848
BstAUI	TGTACA	1 cut(s)	486
BstC8I	GCNNGC	3 cut(s)	358, 422, 849
BstDEI	CTNAG	4 cut(s)	35, 280, 321, 983
BstDSI	CCRYGG	1 cut(s)	264
BstF5I	GGATG	1 cut(s)	790
BstFNI	CGCG	3 cut(s)	190, 424, 676
BstH2I	RGCGCY	2 cut(s)	53, 70
BstHHI	GCGC	2 cut(s)	52, 69
BstKTI	GATC	4 cut(s)	317, 351, 393, 530
BstMAI	GTCTC	1 cut(s)	163
BstMBI	GATC	4 cut(s)	314, 348, 390, 527
BstMWI	GCNNNNNNNGC	1 cut(s)	848
BstNSI	RCATGY	1 cut(s)	851
BstSCI	CCNGG	1 cut(s)	351
BstSFI	CTRYAG	1 cut(s)	54
BstSLI	GKGCMC	1 cut(s)	99
BstUI	CGCG	3 cut(s)	190, 424, 676
BstV1I	GCAGC	2 cut(s)	803, 989
BstX2I	RGATCY	2 cut(s)	314, 348
BstYI	RGATCY	2 cut(s)	314, 348
BsuRI	GGCC	2 cut(s)	178, 263
BtgI	CCRYGG	1 cut(s)	264
BtsCI	GGATG	1 cut(s)	790
BtuMI	TCGCGA	1 cut(s)	424
Cac8I	GCNNGC	3 cut(s)	358, 422, 849
CfoI	GCGC	2 cut(s)	52, 69
Cfr13I	GGNCC	3 cut(s)	401, 630, 858
CseI	GACGC	1 cut(s)	599
Csp6I	GTAC	4 cut(s)	32, 487, 690, 831
CviAII	CATG	3 cut(s)	63, 140, 848
CviQI	GTAC	4 cut(s)	32, 487, 690, 831
DdeI	CTNAG	4 cut(s)	35, 280, 321, 983
DinI	GGCGCC	1 cut(s)	51
DpnI	GATC	4 cut(s)	316, 350, 392, 529
DpnII	GATC	4 cut(s)	314, 348, 390, 527
EaeI	YGGCCR	1 cut(s)	261
Eam1104I	CTCTTC	4 cut(s)	8, 193, 530, 562
EarI	CTCTTC	4 cut(s)	8, 193, 530, 562
Ecl136II	GAGCTC	1 cut(s)	420
Eco147I	AGGCCT	1 cut(s)	178
Eco24I	GRGCYC	2 cut(s)	358, 422
Eco32I	GATATC	1 cut(s)	172
Eco47I	GGWCC	3 cut(s)	401, 630, 858
Eco53kI	GAGCTC	1 cut(s)	420
EcoICRI	GAGCTC	1 cut(s)	420
EcoO109I	RGGNCCY	3 cut(s)	401, 630, 858
EcoRV	GATATC	1 cut(s)	172
EcoT22I	ATGCAT	1 cut(s)	849
EcoT38I	GRGCYC	2 cut(s)	358, 422
EgeI	GGCGCC	1 cut(s)	51
EheI	GGCGCC	1 cut(s)	51
FaeI	CATG	3 cut(s)	66, 143, 851
FalI	AAGNNNNNCTT	2 cut(s)	747, 779
FaqI	GGGAC	3 cut(s)	387, 413, 616
FatI	CATG	3 cut(s)	62, 139, 847
FauI	CCCGC	1 cut(s)	681
Fnu4HI	GCNGC	2 cut(s)	792, 1003
FokI	GGATG	1 cut(s)	797
FriOI	GRGCYC	2 cut(s)	358, 422
Fsp4HI	GCNGC	2 cut(s)	792, 1003
FspBI	CTAG	3 cut(s)	303, 693, 717
GlaI	GCGC	2 cut(s)	51, 68
GluI	GCNGC	2 cut(s)	792, 1003
GsaI	CCCAGC	2 cut(s)	630, 871
GsuI	CTGGAG	1 cut(s)	531
HaeII	RGCGCY	2 cut(s)	53, 70
HaeIII	GGCC	2 cut(s)	178, 263
HapII	CCGG	1 cut(s)	352
HgaI	GACGC	1 cut(s)	599
HhaI	GCGC	2 cut(s)	52, 69
Hin1I	GRCGYC	1 cut(s)	50
Hin1II	CATG	3 cut(s)	66, 143, 851
Hin6I	GCGC	2 cut(s)	50, 67
HinP1I	GCGC	2 cut(s)	50, 67
HincII	GTYRAC	1 cut(s)	888
HindII	GTYRAC	1 cut(s)	888
HinfI	GANTC	7 cut(s)	6, 156, 333, 426, 506, 728, 798
HpaII	CCGG	1 cut(s)	352
HphI	GGTGA	2 cut(s)	233, 595
Hpy166II	GTNNAC	3 cut(s)	337, 476, 888
Hpy188I	TCNGA	4 cut(s)	197, 322, 395, 414
Hpy188III	TCNNGA	9 cut(s)	10, 253, 404, 423, 503, 525, 548, 576, 698
Hpy8I	GTNNAC	3 cut(s)	337, 476, 888
HpyAV	CCTTC	5 cut(s)	160, 268, 592, 779, 964
HpyCH4III	ACNGT	2 cut(s)	137, 268
HpyCH4V	TGCA	7 cut(s)	143, 151, 443, 704, 725, 752, 847
HpyF10VI	GCNNNNNNNGC	1 cut(s)	848
HpyF3I	CTNAG	4 cut(s)	35, 280, 321, 983
Hsp92I	GRCGYC	1 cut(s)	50
Hsp92II	CATG	3 cut(s)	66, 143, 851
HspAI	GCGC	2 cut(s)	50, 67
KasI	GGCGCC	1 cut(s)	49
KflI	GGGWCCC	2 cut(s)	401, 630
Kzo9I	GATC	4 cut(s)	314, 348, 390, 527
LguI	GCTCTTC	1 cut(s)	562
LmnI	GCTCC	3 cut(s)	18, 59, 973
Lsp1109I	GCAGC	2 cut(s)	803, 989
LweI	GCATC	5 cut(s)	649, 691, 712, 739, 968
MaeI	CTAG	3 cut(s)	303, 693, 717
MaeIII	GTNAC	1 cut(s)	453
MalI	GATC	4 cut(s)	316, 350, 392, 529
MboI	GATC	4 cut(s)	314, 348, 390, 527
MboII	GAAGA	6 cut(s)	25, 210, 309, 547, 549, 954
MfeI	CAATTG	1 cut(s)	591
MflI	RGATCY	2 cut(s)	314, 348
MhlI	GDGCHC	3 cut(s)	99, 358, 422
MlsI	TGGCCA	1 cut(s)	263
MluCI	AATT	3 cut(s)	289, 362, 591
MluNI	TGGCCA	1 cut(s)	263
Mly113I	GGCGCC	1 cut(s)	50
MlyI	GAGTC	4 cut(s)	165, 342, 435, 737
Mox20I	TGGCCA	1 cut(s)	263
Mph1103I	ATGCAT	1 cut(s)	849
MscI	TGGCCA	1 cut(s)	263
MseI	TTAA	2 cut(s)	329, 863
Msp20I	TGGCCA	1 cut(s)	263
MspCI	CTTAAG	1 cut(s)	862
MspI	CCGG	1 cut(s)	352
MspR9I	CCNGG	1 cut(s)	353
MunI	CAATTG	1 cut(s)	591
Mva1269I	GAATGC	1 cut(s)	445
MvnI	CGCG	3 cut(s)	190, 424, 676
MwoI	GCNNNNNNNGC	1 cut(s)	848
NarI	GGCGCC	1 cut(s)	50
NciI	CCSGG	1 cut(s)	353
NdeII	GATC	4 cut(s)	314, 348, 390, 527
NlaIII	CATG	3 cut(s)	66, 143, 851
NlaIV	GGNNCC	8 cut(s)	51, 350, 402, 403, 631, 632, 859, 939
NmeAIII	GCCGAG	1 cut(s)	256
NruI	TCGCGA	1 cut(s)	424
NsiI	ATGCAT	1 cut(s)	849
NspI	RCATGY	1 cut(s)	851
PaeI	GCATGC	1 cut(s)	851
PceI	AGGCCT	1 cut(s)	178
PciSI	GCTCTTC	1 cut(s)	562
PctI	GAATGC	1 cut(s)	445
PfeI	GAWTC	3 cut(s)	6, 506, 798
PkrI	GCNGC	2 cut(s)	793, 1004
PleI	GAGTC	4 cut(s)	164, 341, 434, 736
PluTI	GGCGCC	1 cut(s)	53
PpsI	GAGTC	4 cut(s)	164, 341, 434, 736
PpuMI	RGGWCCY	3 cut(s)	401, 630, 858
Psp124BI	GAGCTC	1 cut(s)	422
Psp5II	RGGWCCY	3 cut(s)	401, 630, 858
PspFI	CCCAGC	2 cut(s)	626, 867
PspN4I	GGNNCC	8 cut(s)	51, 350, 402, 403, 631, 632, 859, 939
PspPI	GGNCC	3 cut(s)	401, 630, 858
PspPPI	RGGWCCY	3 cut(s)	401, 630, 858
PsuI	RGATCY	2 cut(s)	314, 348
RruI	TCGCGA	1 cut(s)	424
RsaI	GTAC	4 cut(s)	33, 488, 691, 832
RsaNI	GTAC	4 cut(s)	32, 487, 690, 831
SacI	GAGCTC	1 cut(s)	422
SapI	GCTCTTC	1 cut(s)	562
SaqAI	TTAA	2 cut(s)	329, 863
SatI	GCNGC	2 cut(s)	792, 1003
Sau3AI	GATC	4 cut(s)	314, 348, 390, 527
Sau96I	GGNCC	3 cut(s)	401, 630, 858
ScaI	AGTACT	1 cut(s)	832
SchI	GAGTC	4 cut(s)	165, 342, 435, 737
ScrFI	CCNGG	1 cut(s)	353
SduI	GDGCHC	3 cut(s)	99, 358, 422
SfaNI	GCATC	5 cut(s)	649, 691, 712, 739, 968
SfcI	CTRYAG	1 cut(s)	54
SfoI	GGCGCC	1 cut(s)	51
SinI	GGWCC	3 cut(s)	401, 630, 858
SmlI	CTYRAG	2 cut(s)	160, 862
SmoI	CTYRAG	2 cut(s)	160, 862
SpeI	ACTAGT	1 cut(s)	692
SphI	GCATGC	1 cut(s)	851
Sse9I	AATT	3 cut(s)	289, 362, 591
SseBI	AGGCCT	1 cut(s)	178
SsiI	CCGC	2 cut(s)	188, 674
SspDI	GGCGCC	1 cut(s)	49
SspMI	CTAG	3 cut(s)	303, 693, 717
SstI	GAGCTC	1 cut(s)	422
StuI	AGGCCT	1 cut(s)	178
StyD4I	CCNGG	1 cut(s)	351
TaaI	ACNGT	2 cut(s)	137, 268
TaqI	TCGA	1 cut(s)	577
TasI	AATT	3 cut(s)	289, 362, 591
TatI	WGTACW	2 cut(s)	486, 830
TfiI	GAWTC	3 cut(s)	6, 506, 798
Tru1I	TTAA	2 cut(s)	329, 863
Tru9I	TTAA	2 cut(s)	329, 863
TseI	GCWGC	2 cut(s)	791, 1002
TspDTI	ATGAA	5 cut(s)	300, 452, 510, 939, 954
TspGWI	ACGGA	1 cut(s)	887
Vha464I	CTTAAG	1 cut(s)	862
VpaK11BI	GGWCC	3 cut(s)	401, 630, 858
XceI	RCATGY	1 cut(s)	851
XspI	CTAG	3 cut(s)	303, 693, 717
ZrmI	AGTACT	1 cut(s)	832
Zsp2I	ATGCAT	1 cut(s)	849

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.