Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0003723

Physical Location & Seq

Genomic Coordinates Forward (+)

51379999 .. 51385789

Gene Structure 5791 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG402000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1206 bp

ATGAGATTCAAGAAAGGGAGCAAGGTGGAAGTACTAAACGAAAAGGAGGTGCCTTCAGGAGCATGGCAGTGCGCTGTGATTATATCAGGCAATGGACACACTTACAGTGTTAGGTATGATTGGTCTCCTAACTGGGAAGGTCAAGCAGTTATTGAGAGAGTCCCGCGGAAGGCTATTAGGCCTTGTCCTCCGCCTGTTCAGGGTGCAGATTGTTGGGCAGTCAGTGATGTTGTTGAGGTCTTTGATGTTGGTTTCTGGAAGATGGCTAACATAGTGAAGGTTTTTGATGAAAACTATTACTTGGCTAGGCTACTTGGATCATTTGGGGAGTTTAGAATCCACAAATCTAGGATCAGGGTGCGTCAAGTTTTGAAAGATGAGGAATGGATTGTGATTGGAAAGGGTCTGGGATCAGCTTTCCACAATCATACAAGTTCTCCAGTCTCACGAATGAATTTAAGAATAAAGCTGCCCAATGGAAATGATTGTTTACCTCCTCCGGAAAACAACAGTTGTGAGGATTCCCATATTGTCTCCTCGGCATCATTAAAGAGACCTTCTCAATGTTGCTCTCTTTATACCGAAGCATATCCCCGAAAGATAAGAGCTATTGAGAAAGAATCCGGGCGGCAACAAGTTTTCTCTAGGTCCCCATCTTCCTTGCTTGAGAAGGTAGATGCTGTTGCTTACCCAAGAGAAAATCTGGCTGAAAAATACGTGCACGCTTCGTTTATTTGCCCTTCCGCTCAATATTGTGAAAATGAGAAGCGAATTTTAAATGGTGCCAATTCATGTTTTGAAAGAAGCTCAGATGGTGTTTTTGATAGTGATGCATGCTCTATTGAATCTGTTGGTAGTTGTAGTGTTATTAGTAACAGTTCAAATAAGTTGTCCGGGTATAATCTAGCCGGTCACAGTGAAGATGAAGATACCCTTTGTAGTGATGCAGACTCTTTTTCTGGTGGCGCTGAAGTGCAAGAATTTAATTCCTTTCCTCTGAAAGGGGATGTAACAGCAAGAGACTCTAGGTCGGAGTTGCATGCTTATCGCCGTACTCTGATGTTAATGCATGCTTCAGGTTCTTTAAGTTGGGAACAAGAAGATTTATTGACAAACCTCCGTATGTCCTTACACATTTCCAATGATGAACATTTGATGGAAGTAAGGAACTTAATTTCTGCTGGAACAAATTTTTATGTTAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Agenet ENT

Protein Analysis

401

Amino Acids

44.77

Weight (kDa)

6.04

Isoelectric Point (pI)

51.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Agenet	PF05641	6 - 64	1.5e-16	Agenet domain
ENT	PF03735	345 - 390	2.2e-08	ENT domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003723)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25590 AT4G32440 AT4G32440 AT4G32440
fragaria_vesca	FvH4_2g29660 FvH4_2g29660 FvH4_2g29660
malus_domestica	MD08G1144800.v1.1 MD15G1119500.v1.1
prunus_persica	Prupe.1G473100_v2.0.a1 Prupe.1G473100_v2.0.a1 Prupe.1G473100_v2.0.a1 Prupe.1G473100_v2.0.a1
pyrus_communis	pycom08g12210 pycom15g10850
rosa_chinensis	RchiOBHm_Chr6g0298631 RchiOBHm_Chr7g0226201
rosa_laevigata	RLG00000001759
rosa_multiflora	Rmu_co8115666.1_g000001 Rmu_sc0001350.1_g000005 Rmu_sc0034903.1_g000002
rosa_roxburghii	Rroxscaffold_3G00233130 Rroxscaffold_7G00169470
rosa_rugosa	Rorug07G0235600 Rorug07G0235700
rosa_samantha	Rh6AG393200 Rh6BG401000 Rh6DG393600 Rh7AG382500 Rh7BG369600 Rh7CG402000 Rh7DG380800
rosa_wichuraiana	Rw6G034380 Rw7G032050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	49, 782
AccBSI	CCGCTC	1 cut(s)	746
AccII	CGCG	1 cut(s)	166
AccIII	TCCGGA	1 cut(s)	499
AciI	CCGC	5 cut(s)	164, 166, 191, 628, 744
AclWI	GGATC	3 cut(s)	325, 359, 418
AcsI	RAATTY	4 cut(s)	454, 771, 980, 1189
AcuI	CTGAAG	3 cut(s)	39, 990, 1059
AfaI	GTAC	2 cut(s)	33, 1054
AfiI	CCNNNNNNNGG	3 cut(s)	169, 200, 1001
AgsI	TTSAA	5 cut(s)	10, 373, 800, 845, 882
AhdI	GACNNNNNGTC	1 cut(s)	1027
AluBI	AGCT	4 cut(s)	416, 469, 608, 807
AluI	AGCT	4 cut(s)	416, 469, 608, 807
Alw21I	GWGCWC	1 cut(s)	723
Alw26I	GTCTC	5 cut(s)	129, 448, 538, 547, 1014
Alw44I	GTGCAC	1 cut(s)	719
AlwI	GGATC	3 cut(s)	325, 359, 418
Aor13HI	TCCGGA	1 cut(s)	499
AoxI	GGCC	1 cut(s)	179
ApaLI	GTGCAC	1 cut(s)	719
ApeKI	GCWGC	1 cut(s)	469
ApoI	RAATTY	4 cut(s)	454, 771, 980, 1189
ArsI	GACNNNNNNTTYG	2 cut(s)	875, 907
AspLEI	GCGC	2 cut(s)	74, 968
AspS9I	GGNCC	1 cut(s)	648
AsuC2I	CCSGG	2 cut(s)	625, 895
AvaII	GGWCC	1 cut(s)	648
BaeGI	GKGCMC	1 cut(s)	723
BanI	GGYRCC	2 cut(s)	49, 782
Bbv12I	GWGCWC	1 cut(s)	723
BbvI	GCAGC	1 cut(s)	456
BccI	CCATC	4 cut(s)	256, 661, 806, 1150
BceAI	ACGGC	1 cut(s)	1035
BcgI	CGANNNNNNTGC	2 cut(s)	1028, 1062
BcnI	CCSGG	2 cut(s)	625, 895
BcoDI	GTCTC	5 cut(s)	129, 448, 538, 547, 1014
BfaI	CTAG	5 cut(s)	306, 348, 645, 905, 1026
BfoI	RGCGCY	1 cut(s)	969
BisI	GCNGC	2 cut(s)	470, 629
BlsI	GCNGC	2 cut(s)	471, 630
BmcAI	AGTACT	1 cut(s)	33
Bme1390I	CCNGG	2 cut(s)	625, 895
Bme18I	GGWCC	1 cut(s)	648
BmeRI	GACNNNNNGTC	1 cut(s)	1027
BmgT120I	GGNCC	1 cut(s)	648
BmiI	GGNNCC	3 cut(s)	51, 650, 784
BmrFI	CCNGG	2 cut(s)	625, 895
BmrI	ACTGGG	1 cut(s)	142
BmsI	GCATC	4 cut(s)	551, 667, 820, 934
BmuI	ACTGGG	1 cut(s)	142
BplI	GAGNNNNNCTC	2 cut(s)	544, 576
BpmI	CTGGAG	1 cut(s)	423
BpuEI	CTTGAG	1 cut(s)	686
BpuMI	CCSGG	2 cut(s)	625, 895
BsaAI	YACGTR	1 cut(s)	718
BsaI	GGTCTC	2 cut(s)	129, 547
BsaJI	CCNNGG	2 cut(s)	164, 537
BsaWI	WCCGGW	1 cut(s)	499
BsaXI	ACNNNNNCTCC	2 cut(s)	421, 451
Bsc4I	CCNNNNNNNGG	3 cut(s)	169, 200, 1001
Bse118I	RCCGGY	1 cut(s)	908
Bse1I	ACTGG	2 cut(s)	137, 440
Bse3DI	GCAATG	1 cut(s)	97
BseAI	TCCGGA	1 cut(s)	499
BseDI	CCNNGG	2 cut(s)	164, 537
BseGI	GGATG	1 cut(s)	1012
BseLI	CCNNNNNNNGG	3 cut(s)	169, 200, 1001
BseMI	GCAATG	1 cut(s)	97
BseMII	CTCAG	1 cut(s)	822
BseNI	ACTGG	2 cut(s)	137, 440
BseRI	GAGGAG	2 cut(s)	486, 526
BseSI	GKGCMC	1 cut(s)	723
BseXI	GCAGC	1 cut(s)	456
BsgI	GTGCAG	1 cut(s)	225
Bsh1236I	CGCG	1 cut(s)	166
BshFI	GGCC	1 cut(s)	181
BshNI	GGYRCC	2 cut(s)	49, 782
BsiHKAI	GWGCWC	1 cut(s)	723
BsiSI	CCGG	4 cut(s)	500, 624, 894, 909
BslFI	GGGAC	2 cut(s)	146, 634
BslI	CCNNNNNNNGG	3 cut(s)	169, 200, 1001
BsmAI	GTCTC	5 cut(s)	129, 448, 538, 547, 1014
BsmFI	GGGAC	2 cut(s)	146, 634
BsnI	GGCC	1 cut(s)	181
Bso31I	GGTCTC	2 cut(s)	129, 547
Bsp1286I	GDGCHC	1 cut(s)	723
Bsp13I	TCCGGA	1 cut(s)	499
Bsp143I	GATC	3 cut(s)	317, 351, 410
BspACI	CCGC	5 cut(s)	164, 166, 191, 628, 744
BspANI	GGCC	1 cut(s)	181
BspCNI	CTCAG	1 cut(s)	821
BspEI	TCCGGA	1 cut(s)	499
BspFNI	CGCG	1 cut(s)	166
BspLI	GGNNCC	3 cut(s)	51, 650, 784
BspPI	GGATC	3 cut(s)	325, 359, 418
BspT107I	GGYRCC	2 cut(s)	49, 782
BspTNI	GGTCTC	2 cut(s)	129, 547
BsrBI	CCGCTC	1 cut(s)	746
BsrDI	GCAATG	1 cut(s)	97
BsrFI	RCCGGY	1 cut(s)	908
BsrI	ACTGG	2 cut(s)	137, 440
BssAI	RCCGGY	1 cut(s)	908
BssECI	CCNNGG	2 cut(s)	164, 537
BssMI	GATC	3 cut(s)	317, 351, 410
Bst4CI	ACNGT	4 cut(s)	107, 512, 878, 917
BstBAI	YACGTR	1 cut(s)	718
BstC8I	GCNNGC	4 cut(s)	723, 835, 1041, 1071
BstDEI	CTNAG	1 cut(s)	808
BstDSI	CCRYGG	1 cut(s)	164
BstENI	CCTNNNNNAGG	1 cut(s)	999
BstF5I	GGATG	1 cut(s)	1012
BstFNI	CGCG	1 cut(s)	166
BstH2I	RGCGCY	1 cut(s)	969
BstHHI	GCGC	2 cut(s)	74, 968
BstKTI	GATC	3 cut(s)	320, 354, 413
BstMAI	GTCTC	5 cut(s)	129, 448, 538, 547, 1014
BstMBI	GATC	3 cut(s)	317, 351, 410
BstNSI	RCATGY	3 cut(s)	837, 1043, 1073
BstSCI	CCNGG	2 cut(s)	623, 893
BstSLI	GKGCMC	1 cut(s)	723
BstUI	CGCG	1 cut(s)	166
BstV1I	GCAGC	1 cut(s)	456
BsuRI	GGCC	1 cut(s)	181
BtgI	CCRYGG	1 cut(s)	164
BtsCI	GGATG	1 cut(s)	1012
BtsI	GCAGTG	1 cut(s)	74
BtsIMutI	CAGTG	4 cut(s)	74, 112, 229, 922
Cac8I	GCNNGC	4 cut(s)	723, 835, 1041, 1071
CfoI	GCGC	2 cut(s)	74, 968
Cfr10I	RCCGGY	1 cut(s)	908
Cfr13I	GGNCC	1 cut(s)	648
Cfr42I	CCGCGG	1 cut(s)	167
CseI	GACGC	1 cut(s)	350
Csp6I	GTAC	2 cut(s)	32, 1053
CviAII	CATG	5 cut(s)	63, 792, 834, 1040, 1070
CviQI	GTAC	2 cut(s)	32, 1053
DdeI	CTNAG	1 cut(s)	808
DpnI	GATC	3 cut(s)	319, 353, 412
DpnII	GATC	3 cut(s)	317, 351, 410
DraI	TTTAAA	1 cut(s)	777
DriI	GACNNNNNGTC	1 cut(s)	1027
Eam1105I	GACNNNNNGTC	1 cut(s)	1027
EciI	GGCGGA	1 cut(s)	180
Eco147I	AGGCCT	1 cut(s)	181
Eco31I	GGTCTC	2 cut(s)	129, 547
Eco47I	GGWCC	1 cut(s)	648
Eco57I	CTGAAG	3 cut(s)	39, 990, 1059
EcoNI	CCTNNNNNAGG	1 cut(s)	999
EcoO109I	RGGNCCY	1 cut(s)	648
EcoT22I	ATGCAT	2 cut(s)	835, 1071
FaeI	CATG	5 cut(s)	66, 795, 837, 1043, 1073
FalI	AAGNNNNNCTT	2 cut(s)	918, 950
FaqI	GGGAC	2 cut(s)	146, 634
FatI	CATG	5 cut(s)	62, 791, 833, 1039, 1069
FauI	CCCGC	1 cut(s)	171
Fnu4HI	GCNGC	2 cut(s)	470, 629
FokI	GGATG	1 cut(s)	1019
Fsp4HI	GCNGC	2 cut(s)	470, 629
FspBI	CTAG	5 cut(s)	306, 348, 645, 905, 1026
GlaI	GCGC	2 cut(s)	73, 967
GluI	GCNGC	2 cut(s)	470, 629
GsuI	CTGGAG	1 cut(s)	423
HaeII	RGCGCY	1 cut(s)	969
HaeIII	GGCC	1 cut(s)	181
HapII	CCGG	4 cut(s)	500, 624, 894, 909
HgaI	GACGC	1 cut(s)	350
HhaI	GCGC	2 cut(s)	74, 968
Hin1II	CATG	5 cut(s)	66, 795, 837, 1043, 1073
Hin6I	GCGC	2 cut(s)	72, 966
HinP1I	GCGC	2 cut(s)	72, 966
HinfI	GANTC	8 cut(s)	6, 159, 336, 521, 620, 845, 950, 1022
HpaII	CCGG	4 cut(s)	500, 624, 894, 909
Hpy166II	GTNNAC	2 cut(s)	491, 721
Hpy188I	TCNGA	4 cut(s)	811, 999, 1033, 1059
Hpy188III	TCNNGA	5 cut(s)	10, 57, 256, 447, 500
Hpy8I	GTNNAC	2 cut(s)	491, 721
HpyAV	CCTTC	7 cut(s)	63, 131, 163, 271, 567, 664, 750
HpyCH4III	ACNGT	4 cut(s)	107, 512, 878, 917
HpyCH4IV	ACGT	1 cut(s)	717
HpyCH4V	TGCA	7 cut(s)	206, 721, 833, 947, 976, 1039, 1069
HpyF3I	CTNAG	1 cut(s)	808
HpySE526I	ACGT	1 cut(s)	717
Hsp92II	CATG	5 cut(s)	66, 795, 837, 1043, 1073
HspAI	GCGC	2 cut(s)	72, 966
Kpn2I	TCCGGA	1 cut(s)	499
KspI	CCGCGG	1 cut(s)	167
Kzo9I	GATC	3 cut(s)	317, 351, 410
LmnI	GCTCC	2 cut(s)	18, 59
Lsp1109I	GCAGC	1 cut(s)	456
LweI	GCATC	4 cut(s)	551, 667, 820, 934
MaeI	CTAG	5 cut(s)	306, 348, 645, 905, 1026
MaeII	ACGT	1 cut(s)	717
MaeIII	GTNAC	3 cut(s)	872, 911, 1009
MalI	GATC	3 cut(s)	319, 353, 412
MbiI	CCGCTC	1 cut(s)	746
MboI	GATC	3 cut(s)	317, 351, 410
MboII	GAAGA	5 cut(s)	271, 648, 932, 938, 1112
MhlI	GDGCHC	1 cut(s)	723
MluCI	AATT	7 cut(s)	454, 771, 787, 980, 985, 1173, 1189
MlyI	GAGTC	3 cut(s)	168, 944, 1016
MmeI	TCCRAC	1 cut(s)	1011
Mph1103I	ATGCAT	2 cut(s)	835, 1071
MroI	TCCGGA	1 cut(s)	499
MseI	TTAA	8 cut(s)	458, 548, 776, 984, 1064, 1085, 1172, 1204
MslI	CAYNNNNRTG	1 cut(s)	67
MspA1I	CMGCKG	1 cut(s)	166
MspI	CCGG	4 cut(s)	500, 624, 894, 909
MspR9I	CCNGG	2 cut(s)	625, 895
MvnI	CGCG	1 cut(s)	166
NciI	CCSGG	2 cut(s)	625, 895
NdeII	GATC	3 cut(s)	317, 351, 410
NlaIII	CATG	5 cut(s)	66, 795, 837, 1043, 1073
NlaIV	GGNNCC	3 cut(s)	51, 650, 784
NmeAIII	GCCGAG	1 cut(s)	518
NmuCI	GTSAC	1 cut(s)	911
NsiI	ATGCAT	2 cut(s)	835, 1071
NspI	RCATGY	3 cut(s)	837, 1043, 1073
PaeI	GCATGC	3 cut(s)	837, 1043, 1073
PceI	AGGCCT	1 cut(s)	181
PfeI	GAWTC	5 cut(s)	6, 336, 521, 620, 845
PkrI	GCNGC	2 cut(s)	471, 630
PleI	GAGTC	3 cut(s)	167, 944, 1016
PpsI	GAGTC	3 cut(s)	167, 944, 1016
Ppu21I	YACGTR	1 cut(s)	718
PpuMI	RGGWCCY	1 cut(s)	648
Psp5II	RGGWCCY	1 cut(s)	648
PspN4I	GGNNCC	3 cut(s)	51, 650, 784
PspPI	GGNCC	1 cut(s)	648
PspPPI	RGGWCCY	1 cut(s)	648
RsaI	GTAC	2 cut(s)	33, 1054
RsaNI	GTAC	2 cut(s)	32, 1053
RseI	CAYNNNNRTG	1 cut(s)	67
SacII	CCGCGG	1 cut(s)	167
SaqAI	TTAA	8 cut(s)	458, 548, 776, 984, 1064, 1085, 1172, 1204
SatI	GCNGC	2 cut(s)	470, 629
Sau3AI	GATC	3 cut(s)	317, 351, 410
Sau96I	GGNCC	1 cut(s)	648
ScaI	AGTACT	1 cut(s)	33
SchI	GAGTC	3 cut(s)	168, 944, 1016
ScrFI	CCNGG	2 cut(s)	625, 895
SduI	GDGCHC	1 cut(s)	723
SfaNI	GCATC	4 cut(s)	551, 667, 820, 934
Sfr303I	CCGCGG	1 cut(s)	167
SgrBI	CCGCGG	1 cut(s)	167
SinI	GGWCC	1 cut(s)	648
SmiMI	CAYNNNNRTG	1 cut(s)	67
SmlI	CTYRAG	1 cut(s)	665
SmoI	CTYRAG	1 cut(s)	665
SphI	GCATGC	3 cut(s)	837, 1043, 1073
Sse9I	AATT	7 cut(s)	454, 771, 787, 980, 985, 1173, 1189
SseBI	AGGCCT	1 cut(s)	181
SsiI	CCGC	5 cut(s)	164, 166, 191, 628, 744
SspI	AATATT	1 cut(s)	752
SspMI	CTAG	5 cut(s)	306, 348, 645, 905, 1026
StuI	AGGCCT	1 cut(s)	181
StyD4I	CCNGG	2 cut(s)	623, 893
TaaI	ACNGT	4 cut(s)	107, 512, 878, 917
TaiI	ACGT	1 cut(s)	720
TasI	AATT	7 cut(s)	454, 771, 787, 980, 985, 1173, 1189
TatI	WGTACW	1 cut(s)	31
TauI	GCSGC	1 cut(s)	631
TfiI	GAWTC	5 cut(s)	6, 336, 521, 620, 845
Tru1I	TTAA	8 cut(s)	458, 548, 776, 984, 1064, 1085, 1172, 1204
Tru9I	TTAA	8 cut(s)	458, 548, 776, 984, 1064, 1085, 1172, 1204
TscAI	CASTG	4 cut(s)	74, 112, 229, 922
TseFI	GTSAC	1 cut(s)	911
TseI	GCWGC	1 cut(s)	469
Tsp45I	GTSAC	1 cut(s)	911
TspDTI	ATGAA	5 cut(s)	303, 467, 780, 939, 1161
TspGWI	ACGGA	1 cut(s)	1109
TspRI	CASTG	4 cut(s)	74, 112, 229, 922
VneI	GTGCAC	1 cut(s)	719
VpaK11BI	GGWCC	1 cut(s)	648
XagI	CCTNNNNNAGG	1 cut(s)	999
XapI	RAATTY	4 cut(s)	454, 771, 980, 1189
XceI	RCATGY	3 cut(s)	837, 1043, 1073
XspI	CTAG	5 cut(s)	306, 348, 645, 905, 1026
ZrmI	AGTACT	1 cut(s)	33
Zsp2I	ATGCAT	2 cut(s)	835, 1071

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.