Rh7BG369800

Chaperone protein dnaJ 20, chloroplastic-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0016939
Physical Location & Seq
Reverse (-)
39530958 .. 39531548
591 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG369800.1

Sequence Viewer

Length: 591 bp
ATGAATACTACTTGGATGACCACCTCAACCCTAAACACTAGCTCGGCTGCTAATAAGCTTTCTTTCCTTTCTCATAAATCATCACCAGCTACTATCAGTTATAGTAAGTTTTCTGTCGCGTGCAGAGCTACTAATTATGATACAAGAAACGAGAAAAAAAGCAACTACTATAAGTTACTTAGTTTAAGTCCCAATAATACAAGCATGGATGACATAAAGAGAGCTTACAGAAGCATGGCTCTCCGGTACCACCCTGACGTTGTGGATCATCGAGCTGATGATTCTTCGATGAAGGAGTCGACTCAGTTGTTTGTTCAGCTGAATGAGGCATACAAGACGCTGTCGGATCCCGTGTTGCGTGAGGAGTACGACTATGAATTGGGTTTGACAGCGAATTCATCATGCAGTTCATCTTGTAGGAGTACTACTACCTATAAATTCAGGAAGGATATGAGTACTGTTGGACCAAATTTGCAATGGCGACAACAGATTCTCGAGTTGAAGAGAAGATCAACCGACCGTATGGCACGAAAGGAAGGATCCTGGGCTAGCAGAGTCAGGAGGGCAGAACATGTTTCAACCATGGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ

Protein Analysis

196

Amino Acids

22.54

Weight (kDa)

9.51

Isoelectric Point (pI)

55.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 55 - 124 7.8e-18 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016939)

Species Orthologous Gene IDs
malus_domestica MD08G1221200.v1.1
prunus_persica Prupe.1G558200_v2.0.a1
pyrus_communis pycom15g36670
rosa_chinensis RchiOBHm_Chr7g0226211
rosa_laevigata RLG00000001758
rosa_multiflora Rmu_sc0001350.1_g000004 Rmu_sc0013267.1_g000006
rosa_roxburghii Rroxscaffold_3G00233120
rosa_rugosa Rorug07G0235700
rosa_samantha Rh7AG382600 Rh7BG369800 Rh7CG402100 Rh7DG381000
rosa_wichuraiana Rw7G032060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 246
AccB1I GGYRCC 1 cut(s) 246
AccI GTMKAC 1 cut(s) 299
AccII CGCG 1 cut(s) 119
AclWI GGATC 5 cut(s) 273, 341, 354, 534, 547
AcsI RAATTY 3 cut(s) 394, 437, 469
AfaI GTAC 4 cut(s) 248, 368, 424, 457
AflIII ACRYGT 1 cut(s) 571
AgsI TTSAA 2 cut(s) 502, 579
AjnI CCWGG 1 cut(s) 542
AluBI AGCT 7 cut(s) 42, 58, 89, 128, 224, 275, 319
AluI AGCT 7 cut(s) 42, 58, 89, 128, 224, 275, 319
AlwI GGATC 5 cut(s) 273, 341, 354, 534, 547
Ama87I CYCGRG 1 cut(s) 494
ApeKI GCWGC 1 cut(s) 47
ApoI RAATTY 3 cut(s) 394, 437, 469
Asp718I GGTACC 1 cut(s) 246
AspS9I GGNCC 1 cut(s) 464
AsuHPI GGTGA 1 cut(s) 75
AsuNHI GCTAGC 1 cut(s) 548
AvaI CYCGRG 1 cut(s) 494
AvaII GGWCC 1 cut(s) 464
BamHI GGATCC 2 cut(s) 346, 539
BanI GGYRCC 1 cut(s) 246
BbvI GCAGC 1 cut(s) 34
BciT130I CCWGG 1 cut(s) 544
BfaI CTAG 2 cut(s) 39, 549
BisI GCNGC 1 cut(s) 48
BlsI GCNGC 1 cut(s) 49
BmcAI AGTACT 2 cut(s) 424, 457
Bme1390I CCNGG 1 cut(s) 544
Bme18I GGWCC 1 cut(s) 464
BmeT110I CYCGRG 1 cut(s) 494
BmgT120I GGNCC 1 cut(s) 464
BmiI GGNNCC 3 cut(s) 248, 348, 541
BmrFI CCNGG 1 cut(s) 544
BmtI GCTAGC 1 cut(s) 552
BsaJI CCNNGG 2 cut(s) 543, 582
BsaWI WCCGGW 1 cut(s) 243
Bse3DI GCAATG 1 cut(s) 482
BseBI CCWGG 1 cut(s) 544
BseDI CCNNGG 2 cut(s) 543, 582
BseGI GGATG 2 cut(s) 21, 214
BseMI GCAATG 1 cut(s) 482
BseMII CTCAG 1 cut(s) 317
BseRI GAGGAG 1 cut(s) 377
BseXI GCAGC 1 cut(s) 34
BsgI GTGCAG 1 cut(s) 142
Bsh1236I CGCG 1 cut(s) 119
Bsh1285I CGRYCG 1 cut(s) 520
BshNI GGYRCC 1 cut(s) 246
BsiEI CGRYCG 1 cut(s) 520
BsiHKCI CYCGRG 1 cut(s) 494
BsiSI CCGG 1 cut(s) 244
BslFI GGGAC 1 cut(s) 174
BsmFI GGGAC 1 cut(s) 174
BsoBI CYCGRG 1 cut(s) 494
Bsp143I GATC 4 cut(s) 265, 346, 509, 539
Bsp19I CCATGG 1 cut(s) 582
BspCNI CTCAG 1 cut(s) 316
BspFNI CGCG 1 cut(s) 119
BspLI GGNNCC 3 cut(s) 248, 348, 541
BspOI GCTAGC 1 cut(s) 552
BspPI GGATC 5 cut(s) 273, 341, 354, 534, 547
BspT107I GGYRCC 1 cut(s) 246
BsrDI GCAATG 1 cut(s) 482
BssECI CCNNGG 2 cut(s) 543, 582
BssMI GATC 4 cut(s) 265, 346, 509, 539
BssT1I CCWWGG 1 cut(s) 582
Bst2UI CCWGG 1 cut(s) 544
Bst4CI ACNGT 2 cut(s) 460, 521
Bst6I CTCTTC 1 cut(s) 497
BstC8I GCNNGC 2 cut(s) 121, 550
BstDEI CTNAG 2 cut(s) 179, 303
BstDSI CCRYGG 1 cut(s) 582
BstF5I GGATG 2 cut(s) 21, 214
BstFNI CGCG 1 cut(s) 119
BstKTI GATC 4 cut(s) 268, 349, 512, 542
BstMBI GATC 4 cut(s) 265, 346, 509, 539
BstMCI CGRYCG 1 cut(s) 520
BstMWI GCNNNNNNNGC 1 cut(s) 125
BstNI CCWGG 1 cut(s) 544
BstNSI RCATGY 1 cut(s) 575
BstSCI CCNGG 1 cut(s) 542
BstUI CGCG 1 cut(s) 119
BstV1I GCAGC 1 cut(s) 34
BstX2I RGATCY 2 cut(s) 346, 539
BstYI RGATCY 2 cut(s) 346, 539
BtgI CCRYGG 1 cut(s) 582
BtsCI GGATG 2 cut(s) 21, 214
Cac8I GCNNGC 2 cut(s) 121, 550
Cfr13I GGNCC 1 cut(s) 464
CseI GACGC 1 cut(s) 346
Csp6I GTAC 4 cut(s) 247, 367, 423, 456
CviAII CATG 5 cut(s) 205, 235, 402, 572, 583
CviQI GTAC 4 cut(s) 247, 367, 423, 456
DdeI CTNAG 2 cut(s) 179, 303
DpnI GATC 4 cut(s) 267, 348, 511, 541
DpnII GATC 4 cut(s) 265, 346, 509, 539
Eam1104I CTCTTC 1 cut(s) 497
EarI CTCTTC 1 cut(s) 497
Eco130I CCWWGG 1 cut(s) 582
Eco47I GGWCC 1 cut(s) 464
Eco88I CYCGRG 1 cut(s) 494
EcoRI GAATTC 1 cut(s) 394
EcoRII CCWGG 1 cut(s) 542
EcoT14I CCWWGG 1 cut(s) 582
ErhI CCWWGG 1 cut(s) 582
FaeI CATG 5 cut(s) 208, 238, 405, 575, 586
FaqI GGGAC 1 cut(s) 174
FatI CATG 5 cut(s) 204, 234, 401, 571, 582
FblI GTMKAC 1 cut(s) 299
Fnu4HI GCNGC 1 cut(s) 48
FokI GGATG 2 cut(s) 28, 221
Fsp4HI GCNGC 1 cut(s) 48
FspBI CTAG 2 cut(s) 39, 549
GluI GCNGC 1 cut(s) 48
HapII CCGG 1 cut(s) 244
HgaI GACGC 1 cut(s) 346
Hin1II CATG 5 cut(s) 208, 238, 405, 575, 586
HincII GTYRAC 1 cut(s) 300
HindII GTYRAC 1 cut(s) 300
HindIII AAGCTT 1 cut(s) 56
HinfI GANTC 5 cut(s) 281, 296, 301, 490, 555
HpaII CCGG 1 cut(s) 244
HphI GGTGA 1 cut(s) 75
Hpy166II GTNNAC 1 cut(s) 300
Hpy188I TCNGA 1 cut(s) 346
Hpy188III TCNNGA 3 cut(s) 442, 494, 559
Hpy8I GTNNAC 1 cut(s) 300
HpyAV CCTTC 3 cut(s) 286, 439, 530
HpyCH4III ACNGT 2 cut(s) 460, 521
HpyCH4IV ACGT 1 cut(s) 258
HpyCH4V TGCA 3 cut(s) 123, 405, 475
HpyF10VI GCNNNNNNNGC 1 cut(s) 125
HpyF3I CTNAG 2 cut(s) 179, 303
HpySE526I ACGT 1 cut(s) 258
Hsp92II CATG 5 cut(s) 208, 238, 405, 575, 586
KpnI GGTACC 1 cut(s) 250
Kzo9I GATC 4 cut(s) 265, 346, 509, 539
LpnPI CCDG 7 cut(s) 99, 257, 267, 427, 529, 544, 556
Lsp1109I GCAGC 1 cut(s) 34
MaeI CTAG 2 cut(s) 39, 549
MaeII ACGT 1 cut(s) 258
MaeIII GTNAC 1 cut(s) 174
MalI GATC 4 cut(s) 267, 348, 511, 541
MboI GATC 4 cut(s) 265, 346, 509, 539
MboII GAAGA 3 cut(s) 276, 514, 519
MflI RGATCY 2 cut(s) 346, 539
MluCI AATT 5 cut(s) 133, 377, 394, 437, 469
MlyI GAGTC 3 cut(s) 295, 305, 564
MmeI TCCRAC 2 cut(s) 324, 442
MnlI CCTC 4 cut(s) 34, 319, 355, 555
MseI TTAA 1 cut(s) 185
MspA1I CMGCKG 1 cut(s) 319
MspI CCGG 1 cut(s) 244
MspR9I CCNGG 1 cut(s) 544
MvaI CCWGG 1 cut(s) 544
MvnI CGCG 1 cut(s) 119
MwoI GCNNNNNNNGC 1 cut(s) 125
NcoI CCATGG 1 cut(s) 582
NdeII GATC 4 cut(s) 265, 346, 509, 539
NheI GCTAGC 1 cut(s) 548
NlaIII CATG 5 cut(s) 208, 238, 405, 575, 586
NlaIV GGNNCC 3 cut(s) 248, 348, 541
NmeAIII GCCGAG 1 cut(s) 23
NspI RCATGY 1 cut(s) 575
PaeR7I CTCGAG 1 cut(s) 494
PciI ACATGT 1 cut(s) 571
PfeI GAWTC 2 cut(s) 281, 490
PflFI GACNNNGTC 1 cut(s) 340
PkrI GCNGC 1 cut(s) 49
PleI GAGTC 3 cut(s) 295, 304, 563
PpsI GAGTC 3 cut(s) 295, 304, 563
PscI ACATGT 1 cut(s) 571
Psp6I CCWGG 1 cut(s) 542
PspGI CCWGG 1 cut(s) 542
PspN4I GGNNCC 3 cut(s) 248, 348, 541
PspPI GGNCC 1 cut(s) 464
PsuI RGATCY 2 cut(s) 346, 539
PsyI GACNNNGTC 1 cut(s) 340
PvuII CAGCTG 1 cut(s) 319
RsaI GTAC 4 cut(s) 248, 368, 424, 457
RsaNI GTAC 4 cut(s) 247, 367, 423, 456
SalI GTCGAC 1 cut(s) 298
SaqAI TTAA 1 cut(s) 185
SatI GCNGC 1 cut(s) 48
Sau3AI GATC 4 cut(s) 265, 346, 509, 539
Sau96I GGNCC 1 cut(s) 464
ScaI AGTACT 2 cut(s) 424, 457
SchI GAGTC 3 cut(s) 295, 305, 564
ScrFI CCNGG 1 cut(s) 544
Sfr274I CTCGAG 1 cut(s) 494
SinI GGWCC 1 cut(s) 464
SlaI CTCGAG 1 cut(s) 494
SmlI CTYRAG 1 cut(s) 494
SmoI CTYRAG 1 cut(s) 494
Sse9I AATT 5 cut(s) 133, 377, 394, 437, 469
SspMI CTAG 2 cut(s) 39, 549
StyD4I CCNGG 1 cut(s) 542
StyI CCWWGG 1 cut(s) 582
TaaI ACNGT 2 cut(s) 460, 521
TaiI ACGT 1 cut(s) 261
TaqI TCGA 4 cut(s) 271, 287, 299, 495
TasI AATT 5 cut(s) 133, 377, 394, 437, 469
TatI WGTACW 2 cut(s) 422, 455
TfiI GAWTC 2 cut(s) 281, 490
Tru1I TTAA 1 cut(s) 185
Tru9I TTAA 1 cut(s) 185
TseI GCWGC 1 cut(s) 47
TspDTI ATGAA 5 cut(s) 17, 305, 387, 390, 399
Tth111I GACNNNGTC 1 cut(s) 340
VpaK11BI GGWCC 1 cut(s) 464
XapI RAATTY 3 cut(s) 394, 437, 469
XceI RCATGY 1 cut(s) 575
XcmI CCANNNNNNNNNTGG 1 cut(s) 474
XhoI CTCGAG 1 cut(s) 494
XmiI GTMKAC 1 cut(s) 299
XspI CTAG 2 cut(s) 39, 549
ZrmI AGTACT 2 cut(s) 424, 457
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.