E3 ubiquitin-protein ligase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G07270 |
| fragaria_vesca | FvH4_7g29140 |
| malus_domestica | MD01G1198300.v1.1 MD07G1266000.v1.1 |
| prunus_persica | Prupe.2G291800_v2.0.a1 Prupe.2G291800_v2.0.a1 Prupe.2G291800_v2.0.a1 Prupe.2G291800_v2.0.a1 Prupe.2G291800_v2.0.a1 |
| pyrus_communis | pycom01g20850 pycom07g24400 |
| rosa_chinensis | RchiOBHm_Chr1g0376931 |
| rosa_laevigata | RLG00000026559 |
| rosa_multiflora | Rmu_ssc0000155.1_g000038 |
| rosa_roxburghii | Rroxscaffold_4G00281630 |
| rosa_rugosa | Rorug01G0399600 |
| rosa_samantha | Rh1AG416800 Rh1BG376200 Rh1DG406800 |
| rosa_wichuraiana | Rw1G036570 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 1027 |
| AccB1I | GGYRCC | 2 cut(s) | 731, 795 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 789 |
| AccI | GTMKAC | 3 cut(s) | 1105, 1195, 1425 |
| AccIII | TCCGGA | 1 cut(s) | 29 |
| AciI | CCGC | 4 cut(s) | 156, 159, 1358, 1409 |
| AclWI | GGATC | 3 cut(s) | 709, 1205, 1240 |
| AcoI | YGGCCR | 1 cut(s) | 334 |
| AcuI | CTGAAG | 4 cut(s) | 283, 1044, 1251, 1260 |
| AcvI | CACGTG | 1 cut(s) | 1338 |
| AcyI | GRCGYC | 1 cut(s) | 796 |
| AfaI | GTAC | 3 cut(s) | 282, 582, 1186 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 789, 1150 |
| AflIII | ACRYGT | 1 cut(s) | 370 |
| AgsI | TTSAA | 5 cut(s) | 562, 751, 809, 1367, 1473 |
| AhlI | ACTAGT | 1 cut(s) | 40 |
| AjnI | CCWGG | 2 cut(s) | 1135, 1428 |
| AleI | CACNNNNGTG | 1 cut(s) | 1206 |
| AluBI | AGCT | 8 cut(s) | 344, 617, 659, 989, 1012, 1232, 1467, 1497 |
| AluI | AGCT | 8 cut(s) | 344, 617, 659, 989, 1012, 1232, 1467, 1497 |
| Alw21I | GWGCWC | 4 cut(s) | 23, 499, 1240, 1337 |
| Alw26I | GTCTC | 1 cut(s) | 1444 |
| Alw44I | GTGCAC | 2 cut(s) | 1236, 1333 |
| AlwI | GGATC | 3 cut(s) | 709, 1205, 1240 |
| Ama87I | CYCGRG | 3 cut(s) | 194, 1079, 1371 |
| Aor13HI | TCCGGA | 1 cut(s) | 29 |
| AoxI | GGCC | 6 cut(s) | 130, 166, 334, 1072, 1177, 1445 |
| ApaLI | GTGCAC | 2 cut(s) | 1236, 1333 |
| ApeKI | GCWGC | 8 cut(s) | 50, 190, 356, 521, 554, 683, 989, 1497 |
| AspLEI | GCGC | 2 cut(s) | 798, 1028 |
| AspS9I | GGNCC | 4 cut(s) | 1073, 1083, 1349, 1445 |
| AsuC2I | CCSGG | 4 cut(s) | 1080, 1081, 1372, 1373 |
| AsuHPI | GGTGA | 3 cut(s) | 1193, 1288, 1312 |
| AsuNHI | GCTAGC | 1 cut(s) | 817 |
| AvaI | CYCGRG | 3 cut(s) | 194, 1079, 1371 |
| AvaII | GGWCC | 2 cut(s) | 1083, 1349 |
| BaeGI | GKGCMC | 2 cut(s) | 1240, 1337 |
| BanI | GGYRCC | 2 cut(s) | 731, 795 |
| BauI | CACGAG | 1 cut(s) | 1206 |
| BbrPI | CACGTG | 1 cut(s) | 1338 |
| Bbv12I | GWGCWC | 4 cut(s) | 23, 499, 1240, 1337 |
| BbvI | GCAGC | 8 cut(s) | 37, 177, 343, 533, 541, 670, 976, 1484 |
| BccI | CCATC | 5 cut(s) | 53, 455, 853, 1321, 1340 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 239, 273 |
| BciT130I | CCWGG | 2 cut(s) | 1137, 1430 |
| BcnI | CCSGG | 4 cut(s) | 1080, 1081, 1372, 1373 |
| BcoDI | GTCTC | 1 cut(s) | 1444 |
| BcuI | ACTAGT | 1 cut(s) | 40 |
| BfaI | CTAG | 4 cut(s) | 41, 54, 315, 818 |
| BfmI | CTRYAG | 4 cut(s) | 984, 990, 1300, 1498 |
| BfoI | RGCGCY | 1 cut(s) | 799 |
| BlpI | GCTNAGC | 1 cut(s) | 1042 |
| Bme1390I | CCNGG | 6 cut(s) | 1080, 1081, 1137, 1372, 1373, 1430 |
| Bme18I | GGWCC | 2 cut(s) | 1083, 1349 |
| BmeT110I | CYCGRG | 3 cut(s) | 194, 1079, 1371 |
| BmgT120I | GGNCC | 4 cut(s) | 1073, 1083, 1349, 1445 |
| BmiI | GGNNCC | 4 cut(s) | 733, 797, 1084, 1141 |
| BmrFI | CCNGG | 6 cut(s) | 1080, 1081, 1137, 1372, 1373, 1430 |
| BmrI | ACTGGG | 1 cut(s) | 1286 |
| BmsI | GCATC | 4 cut(s) | 72, 237, 1013, 1519 |
| BmtI | GCTAGC | 1 cut(s) | 821 |
| BmuI | ACTGGG | 1 cut(s) | 1286 |
| BpmI | CTGGAG | 1 cut(s) | 1212 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1042 |
| BpuEI | CTTGAG | 2 cut(s) | 1371, 1475 |
| BpuMI | CCSGG | 4 cut(s) | 1080, 1081, 1372, 1373 |
| BsaAI | YACGTR | 1 cut(s) | 1338 |
| BsaBI | GATNNNNATC | 1 cut(s) | 96 |
| BsaHI | GRCGYC | 1 cut(s) | 796 |
| BsaJI | CCNNGG | 2 cut(s) | 1079, 1371 |
| BsaWI | WCCGGW | 1 cut(s) | 29 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 195, 225, 273, 303, 1486, 1499, 1516, 1529 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 789, 1150 |
| Bse1I | ACTGG | 4 cut(s) | 337, 735, 806, 1292 |
| Bse3DI | GCAATG | 3 cut(s) | 671, 763, 1348 |
| Bse8I | GATNNNNATC | 1 cut(s) | 96 |
| BseAI | TCCGGA | 1 cut(s) | 29 |
| BseBI | CCWGG | 2 cut(s) | 1137, 1430 |
| BseDI | CCNNGG | 2 cut(s) | 1079, 1371 |
| BseGI | GGATG | 1 cut(s) | 929 |
| BseJI | GATNNNNATC | 1 cut(s) | 96 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 789, 1150 |
| BseMI | GCAATG | 3 cut(s) | 671, 763, 1348 |
| BseMII | CTCAG | 2 cut(s) | 452, 1056 |
| BseNI | ACTGG | 4 cut(s) | 337, 735, 806, 1292 |
| BseRI | GAGGAG | 1 cut(s) | 1507 |
| BseSI | GKGCMC | 2 cut(s) | 1240, 1337 |
| BseXI | GCAGC | 8 cut(s) | 37, 177, 343, 533, 541, 670, 976, 1484 |
| BseYI | CCCAGC | 1 cut(s) | 1144 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1409 |
| BshFI | GGCC | 6 cut(s) | 132, 168, 336, 1074, 1179, 1447 |
| BshNI | GGYRCC | 2 cut(s) | 731, 795 |
| BsiEI | CGRYCG | 1 cut(s) | 1409 |
| BsiHKAI | GWGCWC | 4 cut(s) | 23, 499, 1240, 1337 |
| BsiHKCI | CYCGRG | 3 cut(s) | 194, 1079, 1371 |
| BsiSI | CCGG | 4 cut(s) | 30, 337, 1080, 1372 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 789, 1150 |
| BsmAI | GTCTC | 1 cut(s) | 1444 |
| BsnI | GGCC | 6 cut(s) | 132, 168, 336, 1074, 1179, 1447 |
| BsoBI | CYCGRG | 3 cut(s) | 194, 1079, 1371 |
| Bsp1286I | GDGCHC | 4 cut(s) | 23, 499, 1240, 1337 |
| Bsp13I | TCCGGA | 1 cut(s) | 29 |
| Bsp1407I | TGTACA | 1 cut(s) | 280 |
| Bsp143I | GATC | 4 cut(s) | 595, 714, 1210, 1245 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1042 |
| BspACI | CCGC | 4 cut(s) | 156, 159, 1358, 1409 |
| BspANI | GGCC | 6 cut(s) | 132, 168, 336, 1074, 1179, 1447 |
| BspCNI | CTCAG | 2 cut(s) | 451, 1055 |
| BspEI | TCCGGA | 1 cut(s) | 29 |
| BspHI | TCATGA | 1 cut(s) | 474 |
| BspLI | GGNNCC | 4 cut(s) | 733, 797, 1084, 1141 |
| BspMAI | CTGCAG | 2 cut(s) | 994, 1502 |
| BspOI | GCTAGC | 1 cut(s) | 821 |
| BspPI | GGATC | 3 cut(s) | 709, 1205, 1240 |
| BspQI | GCTCTTC | 3 cut(s) | 302, 351, 549 |
| BspT107I | GGYRCC | 2 cut(s) | 731, 795 |
| BsrDI | GCAATG | 3 cut(s) | 671, 763, 1348 |
| BsrGI | TGTACA | 1 cut(s) | 280 |
| BsrI | ACTGG | 4 cut(s) | 337, 735, 806, 1292 |
| BssECI | CCNNGG | 2 cut(s) | 1079, 1371 |
| BssMI | GATC | 4 cut(s) | 595, 714, 1210, 1245 |
| BssNAI | GTATAC | 1 cut(s) | 1196 |
| BssNI | GRCGYC | 1 cut(s) | 796 |
| BssSI | CACGAG | 1 cut(s) | 1206 |
| Bst1107I | GTATAC | 1 cut(s) | 1196 |
| Bst2BI | CACGAG | 1 cut(s) | 1206 |
| Bst2UI | CCWGG | 2 cut(s) | 1137, 1430 |
| Bst4CI | ACNGT | 3 cut(s) | 230, 1220, 1259 |
| Bst6I | CTCTTC | 3 cut(s) | 302, 351, 549 |
| BstACI | GRCGYC | 1 cut(s) | 796 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 102, 731 |
| BstAUI | TGTACA | 1 cut(s) | 280 |
| BstBAI | YACGTR | 1 cut(s) | 1338 |
| BstC8I | GCNNGC | 6 cut(s) | 252, 819, 1048, 1072, 1358, 1413 |
| BstDEI | CTNAG | 3 cut(s) | 438, 504, 1042 |
| BstF5I | GGATG | 1 cut(s) | 929 |
| BstH2I | RGCGCY | 1 cut(s) | 799 |
| BstHHI | GCGC | 2 cut(s) | 798, 1028 |
| BstKTI | GATC | 4 cut(s) | 598, 717, 1213, 1248 |
| BstMAI | GTCTC | 1 cut(s) | 1444 |
| BstMBI | GATC | 4 cut(s) | 595, 714, 1210, 1245 |
| BstMCI | CGRYCG | 1 cut(s) | 1409 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 102, 731, 779, 802, 1047, 1473, 1494 |
| BstNI | CCWGG | 2 cut(s) | 1137, 1430 |
| BstNSI | RCATGY | 4 cut(s) | 258, 374, 981, 1480 |
| BstSCI | CCNGG | 6 cut(s) | 1078, 1079, 1135, 1370, 1371, 1428 |
| BstSFI | CTRYAG | 4 cut(s) | 984, 990, 1300, 1498 |
| BstSLI | GKGCMC | 2 cut(s) | 1240, 1337 |
| BstV1I | GCAGC | 8 cut(s) | 37, 177, 343, 533, 541, 670, 976, 1484 |
| BstX2I | RGATCY | 2 cut(s) | 714, 1245 |
| BstYI | RGATCY | 2 cut(s) | 714, 1245 |
| BstZ17I | GTATAC | 1 cut(s) | 1196 |
| BsuRI | GGCC | 6 cut(s) | 132, 168, 336, 1074, 1179, 1447 |
| BtsCI | GGATG | 1 cut(s) | 929 |
| BtsI | GCAGTG | 2 cut(s) | 537, 812 |
| BtsIMutI | CAGTG | 4 cut(s) | 537, 799, 812, 1520 |
| Cac8I | GCNNGC | 6 cut(s) | 252, 819, 1048, 1072, 1358, 1413 |
| CciI | TCATGA | 1 cut(s) | 474 |
| CfoI | GCGC | 2 cut(s) | 798, 1028 |
| Cfr13I | GGNCC | 4 cut(s) | 1073, 1083, 1349, 1445 |
| Cfr9I | CCCGGG | 2 cut(s) | 1079, 1371 |
| Csp6I | GTAC | 3 cut(s) | 281, 581, 1185 |
| CviQI | GTAC | 3 cut(s) | 281, 581, 1185 |
| DdeI | CTNAG | 3 cut(s) | 438, 504, 1042 |
| DinI | GGCGCC | 1 cut(s) | 797 |
| DpnI | GATC | 4 cut(s) | 597, 716, 1212, 1247 |
| DpnII | GATC | 4 cut(s) | 595, 714, 1210, 1245 |
| EaeI | YGGCCR | 1 cut(s) | 334 |
| Eam1104I | CTCTTC | 3 cut(s) | 302, 351, 549 |
| EarI | CTCTTC | 3 cut(s) | 302, 351, 549 |
| Eco32I | GATATC | 1 cut(s) | 952 |
| Eco47I | GGWCC | 2 cut(s) | 1083, 1349 |
| Eco57I | CTGAAG | 4 cut(s) | 283, 1044, 1251, 1260 |
| Eco72I | CACGTG | 1 cut(s) | 1338 |
| Eco88I | CYCGRG | 3 cut(s) | 194, 1079, 1371 |
| EcoRII | CCWGG | 2 cut(s) | 1135, 1428 |
| EcoRV | GATATC | 1 cut(s) | 952 |
| EgeI | GGCGCC | 1 cut(s) | 797 |
| EheI | GGCGCC | 1 cut(s) | 797 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 403, 435 |
| FauI | CCCGC | 1 cut(s) | 1365 |
| FauNDI | CATATG | 1 cut(s) | 549 |
| FblI | GTMKAC | 3 cut(s) | 1105, 1195, 1425 |
| FokI | GGATG | 1 cut(s) | 916 |
| FspAI | RTGCGCAY | 1 cut(s) | 1027 |
| FspBI | CTAG | 4 cut(s) | 41, 54, 315, 818 |
| FspI | TGCGCA | 1 cut(s) | 1027 |
| GlaI | GCGC | 2 cut(s) | 797, 1027 |
| GsaI | CCCAGC | 1 cut(s) | 1148 |
| GsuI | CTGGAG | 1 cut(s) | 1212 |
| HaeII | RGCGCY | 1 cut(s) | 799 |
| HaeIII | GGCC | 6 cut(s) | 132, 168, 336, 1074, 1179, 1447 |
| HapII | CCGG | 4 cut(s) | 30, 337, 1080, 1372 |
| HhaI | GCGC | 2 cut(s) | 798, 1028 |
| Hin1I | GRCGYC | 1 cut(s) | 796 |
| Hin6I | GCGC | 2 cut(s) | 796, 1026 |
| HinP1I | GCGC | 2 cut(s) | 796, 1026 |
| HinfI | GANTC | 4 cut(s) | 425, 833, 1113, 1367 |
| HpaII | CCGG | 4 cut(s) | 30, 337, 1080, 1372 |
| HphI | GGTGA | 3 cut(s) | 1193, 1288, 1312 |
| Hpy166II | GTNNAC | 5 cut(s) | 1106, 1196, 1238, 1335, 1426 |
| Hpy188I | TCNGA | 9 cut(s) | 302, 432, 441, 714, 832, 882, 1063, 1250, 1279 |
| Hpy188III | TCNNGA | 7 cut(s) | 30, 196, 219, 475, 1208, 1214, 1388 |
| Hpy8I | GTNNAC | 5 cut(s) | 1106, 1196, 1238, 1335, 1426 |
| Hpy99I | CGWCG | 1 cut(s) | 455 |
| HpyAV | CCTTC | 3 cut(s) | 989, 1068, 1436 |
| HpyCH4III | ACNGT | 3 cut(s) | 230, 1220, 1259 |
| HpyCH4IV | ACGT | 2 cut(s) | 1337, 1418 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 102, 731, 779, 802, 1047, 1473, 1494 |
| HpyF3I | CTNAG | 3 cut(s) | 438, 504, 1042 |
| HpySE526I | ACGT | 2 cut(s) | 1337, 1418 |
| Hsp92I | GRCGYC | 1 cut(s) | 796 |
| HspAI | GCGC | 2 cut(s) | 796, 1026 |
| KasI | GGCGCC | 1 cut(s) | 795 |
| Kpn2I | TCCGGA | 1 cut(s) | 29 |
| Kzo9I | GATC | 4 cut(s) | 595, 714, 1210, 1245 |
| LguI | GCTCTTC | 3 cut(s) | 302, 351, 549 |
| LmnI | GCTCC | 6 cut(s) | 203, 656, 1145, 1485, 1494, 1507 |
| Lsp1109I | GCAGC | 8 cut(s) | 37, 177, 343, 533, 541, 670, 976, 1484 |
| LweI | GCATC | 4 cut(s) | 72, 237, 1013, 1519 |
| MaeI | CTAG | 4 cut(s) | 41, 54, 315, 818 |
| MaeII | ACGT | 2 cut(s) | 1337, 1418 |
| MaeIII | GTNAC | 7 cut(s) | 310, 619, 695, 925, 1170, 1294, 1318 |
| MalI | GATC | 4 cut(s) | 597, 716, 1212, 1247 |
| MboI | GATC | 4 cut(s) | 595, 714, 1210, 1245 |
| MboII | GAAGA | 5 cut(s) | 289, 338, 536, 590, 1266 |
| MflI | RGATCY | 2 cut(s) | 714, 1245 |
| MhlI | GDGCHC | 4 cut(s) | 23, 499, 1240, 1337 |
| MluCI | AATT | 8 cut(s) | 7, 214, 751, 826, 862, 1130, 1160, 1394 |
| Mly113I | GGCGCC | 1 cut(s) | 796 |
| MlyI | GAGTC | 1 cut(s) | 827 |
| MroI | TCCGGA | 1 cut(s) | 29 |
| MseI | TTAA | 4 cut(s) | 68, 701, 918, 1537 |
| MslI | CAYNNNNRTG | 2 cut(s) | 16, 1206 |
| MspA1I | CMGCKG | 1 cut(s) | 617 |
| MspI | CCGG | 4 cut(s) | 30, 337, 1080, 1372 |
| MspR9I | CCNGG | 6 cut(s) | 1080, 1081, 1137, 1372, 1373, 1430 |
| MvaI | CCWGG | 2 cut(s) | 1137, 1430 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 102, 731, 779, 802, 1047, 1473, 1494 |
| NarI | GGCGCC | 1 cut(s) | 796 |
| NciI | CCSGG | 4 cut(s) | 1080, 1081, 1372, 1373 |
| NdeI | CATATG | 1 cut(s) | 549 |
| NdeII | GATC | 4 cut(s) | 595, 714, 1210, 1245 |
| NheI | GCTAGC | 1 cut(s) | 817 |
| NlaIV | GGNNCC | 4 cut(s) | 733, 797, 1084, 1141 |
| NmeAIII | GCCGAG | 1 cut(s) | 1473 |
| NmuCI | GTSAC | 5 cut(s) | 619, 925, 1170, 1294, 1318 |
| NsbI | TGCGCA | 1 cut(s) | 1027 |
| NspI | RCATGY | 4 cut(s) | 258, 374, 981, 1480 |
| OliI | CACNNNNGTG | 1 cut(s) | 1206 |
| PaeR7I | CTCGAG | 1 cut(s) | 194 |
| PagI | TCATGA | 1 cut(s) | 474 |
| PciI | ACATGT | 1 cut(s) | 370 |
| PciSI | GCTCTTC | 3 cut(s) | 302, 351, 549 |
| PfeI | GAWTC | 3 cut(s) | 425, 1113, 1367 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 789 |
| PleI | GAGTC | 1 cut(s) | 827 |
| PluTI | GGCGCC | 1 cut(s) | 799 |
| PmaCI | CACGTG | 1 cut(s) | 1338 |
| PmlI | CACGTG | 1 cut(s) | 1338 |
| PpsI | GAGTC | 1 cut(s) | 827 |
| Ppu21I | YACGTR | 1 cut(s) | 1338 |
| PscI | ACATGT | 1 cut(s) | 370 |
| Psp6I | CCWGG | 2 cut(s) | 1135, 1428 |
| PspCI | CACGTG | 1 cut(s) | 1338 |
| PspFI | CCCAGC | 1 cut(s) | 1144 |
| PspGI | CCWGG | 2 cut(s) | 1135, 1428 |
| PspN4I | GGNNCC | 4 cut(s) | 733, 797, 1084, 1141 |
| PspPI | GGNCC | 4 cut(s) | 1073, 1083, 1349, 1445 |
| PstI | CTGCAG | 2 cut(s) | 994, 1502 |
| PsuI | RGATCY | 2 cut(s) | 714, 1245 |
| PvuII | CAGCTG | 1 cut(s) | 617 |
| RsaI | GTAC | 3 cut(s) | 282, 582, 1186 |
| RsaNI | GTAC | 3 cut(s) | 281, 581, 1185 |
| RseI | CAYNNNNRTG | 2 cut(s) | 16, 1206 |
| SapI | GCTCTTC | 3 cut(s) | 302, 351, 549 |
| SaqAI | TTAA | 4 cut(s) | 68, 701, 918, 1537 |
| Sau3AI | GATC | 4 cut(s) | 595, 714, 1210, 1245 |
| Sau96I | GGNCC | 4 cut(s) | 1073, 1083, 1349, 1445 |
| SchI | GAGTC | 1 cut(s) | 827 |
| ScrFI | CCNGG | 6 cut(s) | 1080, 1081, 1137, 1372, 1373, 1430 |
| SduI | GDGCHC | 4 cut(s) | 23, 499, 1240, 1337 |
| SfaNI | GCATC | 4 cut(s) | 72, 237, 1013, 1519 |
| SfcI | CTRYAG | 4 cut(s) | 984, 990, 1300, 1498 |
| SfoI | GGCGCC | 1 cut(s) | 797 |
| Sfr274I | CTCGAG | 1 cut(s) | 194 |
| SinI | GGWCC | 2 cut(s) | 1083, 1349 |
| SlaI | CTCGAG | 1 cut(s) | 194 |
| SmaI | CCCGGG | 2 cut(s) | 1081, 1373 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 16, 1206 |
| SmlI | CTYRAG | 3 cut(s) | 194, 1386, 1454 |
| SmoI | CTYRAG | 3 cut(s) | 194, 1386, 1454 |
| SpeI | ACTAGT | 1 cut(s) | 40 |
| Sse9I | AATT | 8 cut(s) | 7, 214, 751, 826, 862, 1130, 1160, 1394 |
| SsiI | CCGC | 4 cut(s) | 156, 159, 1358, 1409 |
| SspDI | GGCGCC | 1 cut(s) | 795 |
| SspMI | CTAG | 4 cut(s) | 41, 54, 315, 818 |
| StyD4I | CCNGG | 6 cut(s) | 1078, 1079, 1135, 1370, 1371, 1428 |
| TaaI | ACNGT | 3 cut(s) | 230, 1220, 1259 |
| TaiI | ACGT | 2 cut(s) | 1340, 1421 |
| TaqI | TCGA | 2 cut(s) | 195, 259 |
| TasI | AATT | 8 cut(s) | 7, 214, 751, 826, 862, 1130, 1160, 1394 |
| TatI | WGTACW | 1 cut(s) | 280 |
| TauI | GCSGC | 2 cut(s) | 158, 161 |
| TfiI | GAWTC | 3 cut(s) | 425, 1113, 1367 |
| Tru1I | TTAA | 4 cut(s) | 68, 701, 918, 1537 |
| Tru9I | TTAA | 4 cut(s) | 68, 701, 918, 1537 |
| TscAI | CASTG | 4 cut(s) | 544, 806, 819, 1520 |
| TseFI | GTSAC | 5 cut(s) | 619, 925, 1170, 1294, 1318 |
| TseI | GCWGC | 8 cut(s) | 50, 190, 356, 521, 554, 683, 989, 1497 |
| Tsp45I | GTSAC | 5 cut(s) | 619, 925, 1170, 1294, 1318 |
| TspDTI | ATGAA | 5 cut(s) | 338, 536, 590, 617, 1407 |
| TspGWI | ACGGA | 4 cut(s) | 468, 648, 1125, 1296 |
| TspMI | CCCGGG | 2 cut(s) | 1079, 1371 |
| TspRI | CASTG | 4 cut(s) | 544, 806, 819, 1520 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 789 |
| VneI | GTGCAC | 2 cut(s) | 1236, 1333 |
| VpaK11BI | GGWCC | 2 cut(s) | 1083, 1349 |
| XceI | RCATGY | 4 cut(s) | 258, 374, 981, 1480 |
| XhoI | CTCGAG | 1 cut(s) | 194 |
| XmaI | CCCGGG | 2 cut(s) | 1079, 1371 |
| XmiI | GTMKAC | 3 cut(s) | 1105, 1195, 1425 |
| XspI | CTAG | 4 cut(s) | 41, 54, 315, 818 |