E3 ubiquitin-protein ligase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G07270 |
| fragaria_vesca | FvH4_7g29140 |
| malus_domestica | MD01G1198300.v1.1 MD07G1266000.v1.1 |
| prunus_persica | Prupe.2G291800_v2.0.a1 Prupe.2G291800_v2.0.a1 Prupe.2G291800_v2.0.a1 Prupe.2G291800_v2.0.a1 Prupe.2G291800_v2.0.a1 |
| pyrus_communis | pycom01g20850 pycom07g24400 |
| rosa_chinensis | RchiOBHm_Chr1g0376931 |
| rosa_laevigata | RLG00000026559 |
| rosa_multiflora | Rmu_ssc0000155.1_g000038 |
| rosa_roxburghii | Rroxscaffold_4G00281630 |
| rosa_rugosa | Rorug01G0399600 |
| rosa_samantha | Rh1AG416800 Rh1BG376200 Rh1DG406800 |
| rosa_wichuraiana | Rw1G036570 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 1415 |
| Acc16I | TGCGCA | 1 cut(s) | 1027 |
| AccB1I | GGYRCC | 1 cut(s) | 795 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 789 |
| AccBSI | CCGCTC | 1 cut(s) | 542 |
| AciI | CCGC | 4 cut(s) | 50, 156, 540, 812 |
| AclWI | GGATC | 1 cut(s) | 709 |
| AcoI | YGGCCR | 1 cut(s) | 232 |
| AcsI | RAATTY | 3 cut(s) | 7, 433, 1391 |
| AcuI | CTGAAG | 2 cut(s) | 1248, 1257 |
| AcyI | GRCGYC | 2 cut(s) | 796, 1412 |
| AfaI | GTAC | 2 cut(s) | 116, 1186 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 129, 789, 1150 |
| AflIII | ACRYGT | 2 cut(s) | 370, 1470 |
| AgsI | TTSAA | 7 cut(s) | 74, 562, 809, 919, 1364, 1451, 1467 |
| AjnI | CCWGG | 3 cut(s) | 966, 1078, 1135 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 71, 103 |
| Alw21I | GWGCWC | 4 cut(s) | 23, 499, 1237, 1334 |
| Alw26I | GTCTC | 1 cut(s) | 31 |
| Alw44I | GTGCAC | 1 cut(s) | 1330 |
| AlwI | GGATC | 1 cut(s) | 709 |
| AoxI | GGCC | 5 cut(s) | 166, 232, 1072, 1177, 1439 |
| ApaLI | GTGCAC | 1 cut(s) | 1330 |
| ApeKI | GCWGC | 9 cut(s) | 158, 356, 554, 614, 683, 814, 989, 1491, 1494 |
| ApoI | RAATTY | 3 cut(s) | 7, 433, 1391 |
| AspLEI | GCGC | 2 cut(s) | 798, 1028 |
| AspS9I | GGNCC | 4 cut(s) | 1073, 1083, 1346, 1439 |
| AsuC2I | CCSGG | 3 cut(s) | 1289, 1369, 1398 |
| AsuHPI | GGTGA | 2 cut(s) | 470, 1205 |
| AsuNHI | GCTAGC | 2 cut(s) | 734, 817 |
| AvaII | GGWCC | 2 cut(s) | 1083, 1346 |
| BaeGI | GKGCMC | 1 cut(s) | 1334 |
| BalI | TGGCCA | 1 cut(s) | 234 |
| BanI | GGYRCC | 1 cut(s) | 795 |
| Bbv12I | GWGCWC | 4 cut(s) | 23, 499, 1237, 1334 |
| BbvI | GCAGC | 9 cut(s) | 145, 343, 541, 626, 670, 801, 976, 1478, 1506 |
| BccI | CCATC | 2 cut(s) | 53, 1337 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 239, 273 |
| BciT130I | CCWGG | 3 cut(s) | 968, 1080, 1137 |
| BcnI | CCSGG | 3 cut(s) | 1289, 1369, 1398 |
| BcoDI | GTCTC | 1 cut(s) | 31 |
| BfaI | CTAG | 2 cut(s) | 735, 818 |
| BfmI | CTRYAG | 3 cut(s) | 990, 1059, 1492 |
| BfoI | RGCGCY | 1 cut(s) | 799 |
| BmcAI | AGTACT | 1 cut(s) | 116 |
| Bme1390I | CCNGG | 6 cut(s) | 968, 1080, 1137, 1289, 1369, 1398 |
| Bme18I | GGWCC | 2 cut(s) | 1083, 1346 |
| BmgT120I | GGNCC | 4 cut(s) | 1073, 1083, 1346, 1439 |
| BmiI | GGNNCC | 4 cut(s) | 658, 797, 1084, 1141 |
| BmrFI | CCNGG | 6 cut(s) | 968, 1080, 1137, 1289, 1369, 1398 |
| BmsI | GCATC | 3 cut(s) | 237, 1013, 1513 |
| BmtI | GCTAGC | 2 cut(s) | 738, 821 |
| BpmI | CTGGAG | 2 cut(s) | 1221, 1498 |
| BpuEI | CTTGAG | 1 cut(s) | 1368 |
| BpuMI | CCSGG | 3 cut(s) | 1289, 1369, 1398 |
| BsaHI | GRCGYC | 2 cut(s) | 796, 1412 |
| BsaJI | CCNNGG | 1 cut(s) | 1079 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 195, 225, 1493, 1523 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 129, 789, 1150 |
| Bse118I | RCCGGY | 1 cut(s) | 844 |
| Bse1I | ACTGG | 2 cut(s) | 45, 806 |
| Bse3DI | GCAATG | 5 cut(s) | 313, 671, 763, 1345, 1519 |
| BseBI | CCWGG | 3 cut(s) | 968, 1080, 1137 |
| BseDI | CCNNGG | 1 cut(s) | 1079 |
| BseGI | GGATG | 2 cut(s) | 1004, 1053 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 129, 789, 1150 |
| BseMI | GCAATG | 5 cut(s) | 313, 671, 763, 1345, 1519 |
| BseMII | CTCAG | 2 cut(s) | 452, 1509 |
| BseNI | ACTGG | 2 cut(s) | 45, 806 |
| BseRI | GAGGAG | 1 cut(s) | 132 |
| BseSI | GKGCMC | 1 cut(s) | 1334 |
| BseXI | GCAGC | 9 cut(s) | 145, 343, 541, 626, 670, 801, 976, 1478, 1506 |
| BseYI | CCCAGC | 2 cut(s) | 1144, 1225 |
| BshFI | GGCC | 5 cut(s) | 168, 234, 1074, 1179, 1441 |
| BshNI | GGYRCC | 1 cut(s) | 795 |
| BsiHKAI | GWGCWC | 4 cut(s) | 23, 499, 1237, 1334 |
| BsiSI | CCGG | 6 cut(s) | 30, 660, 845, 1289, 1369, 1398 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 129, 789, 1150 |
| BsmAI | GTCTC | 1 cut(s) | 31 |
| BsmI | GAATGC | 2 cut(s) | 848, 1378 |
| BsnI | GGCC | 5 cut(s) | 168, 234, 1074, 1179, 1441 |
| Bsp1286I | GDGCHC | 4 cut(s) | 23, 499, 1237, 1334 |
| Bsp143I | GATC | 2 cut(s) | 595, 714 |
| BspACI | CCGC | 4 cut(s) | 50, 156, 540, 812 |
| BspANI | GGCC | 5 cut(s) | 168, 234, 1074, 1179, 1441 |
| BspCNI | CTCAG | 2 cut(s) | 451, 1510 |
| BspHI | TCATGA | 1 cut(s) | 882 |
| BspLI | GGNNCC | 4 cut(s) | 658, 797, 1084, 1141 |
| BspMAI | CTGCAG | 3 cut(s) | 994, 1063, 1496 |
| BspOI | GCTAGC | 2 cut(s) | 738, 821 |
| BspPI | GGATC | 1 cut(s) | 709 |
| BspQI | GCTCTTC | 2 cut(s) | 351, 549 |
| BspT107I | GGYRCC | 1 cut(s) | 795 |
| BsrBI | CCGCTC | 1 cut(s) | 542 |
| BsrDI | GCAATG | 5 cut(s) | 313, 671, 763, 1345, 1519 |
| BsrFI | RCCGGY | 1 cut(s) | 844 |
| BsrI | ACTGG | 2 cut(s) | 45, 806 |
| BssAI | RCCGGY | 1 cut(s) | 844 |
| BssECI | CCNNGG | 1 cut(s) | 1079 |
| BssMI | GATC | 2 cut(s) | 595, 714 |
| BssNI | GRCGYC | 2 cut(s) | 796, 1412 |
| Bst2UI | CCWGG | 3 cut(s) | 968, 1080, 1137 |
| Bst4CI | ACNGT | 4 cut(s) | 230, 464, 1217, 1256 |
| Bst6I | CTCTTC | 2 cut(s) | 351, 549 |
| BstACI | GRCGYC | 2 cut(s) | 796, 1412 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 102, 731 |
| BstC8I | GCNNGC | 5 cut(s) | 252, 522, 736, 819, 1196 |
| BstDEI | CTNAG | 3 cut(s) | 111, 438, 1518 |
| BstF5I | GGATG | 2 cut(s) | 1004, 1053 |
| BstH2I | RGCGCY | 1 cut(s) | 799 |
| BstHHI | GCGC | 2 cut(s) | 798, 1028 |
| BstKTI | GATC | 2 cut(s) | 598, 717 |
| BstMAI | GTCTC | 1 cut(s) | 31 |
| BstMBI | GATC | 2 cut(s) | 595, 714 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 102, 611, 731, 802, 811, 1047, 1488 |
| BstNI | CCWGG | 3 cut(s) | 968, 1080, 1137 |
| BstNSI | RCATGY | 4 cut(s) | 374, 981, 1198, 1474 |
| BstSCI | CCNGG | 6 cut(s) | 966, 1078, 1135, 1287, 1367, 1396 |
| BstSFI | CTRYAG | 3 cut(s) | 990, 1059, 1492 |
| BstSLI | GKGCMC | 1 cut(s) | 1334 |
| BstV1I | GCAGC | 9 cut(s) | 145, 343, 541, 626, 670, 801, 976, 1478, 1506 |
| BstX2I | RGATCY | 1 cut(s) | 714 |
| BstYI | RGATCY | 1 cut(s) | 714 |
| BsuRI | GGCC | 5 cut(s) | 168, 234, 1074, 1179, 1441 |
| BtsCI | GGATG | 2 cut(s) | 1004, 1053 |
| BtsI | GCAGTG | 1 cut(s) | 872 |
| BtsIMutI | CAGTG | 3 cut(s) | 799, 872, 1514 |
| Cac8I | GCNNGC | 5 cut(s) | 252, 522, 736, 819, 1196 |
| CciI | TCATGA | 1 cut(s) | 882 |
| CfoI | GCGC | 2 cut(s) | 798, 1028 |
| Cfr10I | RCCGGY | 1 cut(s) | 844 |
| Cfr13I | GGNCC | 4 cut(s) | 1073, 1083, 1346, 1439 |
| Csp6I | GTAC | 2 cut(s) | 115, 1185 |
| CviQI | GTAC | 2 cut(s) | 115, 1185 |
| DdeI | CTNAG | 3 cut(s) | 111, 438, 1518 |
| DinI | GGCGCC | 1 cut(s) | 797 |
| DpnI | GATC | 2 cut(s) | 597, 716 |
| DpnII | GATC | 2 cut(s) | 595, 714 |
| DraI | TTTAAA | 1 cut(s) | 750 |
| EaeI | YGGCCR | 1 cut(s) | 232 |
| Eam1104I | CTCTTC | 2 cut(s) | 351, 549 |
| EarI | CTCTTC | 2 cut(s) | 351, 549 |
| Eco47I | GGWCC | 2 cut(s) | 1083, 1346 |
| Eco57I | CTGAAG | 2 cut(s) | 1248, 1257 |
| EcoRI | GAATTC | 2 cut(s) | 7, 433 |
| EcoRII | CCWGG | 3 cut(s) | 966, 1078, 1135 |
| EcoT22I | ATGCAT | 1 cut(s) | 1196 |
| EgeI | GGCGCC | 1 cut(s) | 797 |
| EheI | GGCGCC | 1 cut(s) | 797 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 403, 435 |
| FauNDI | CATATG | 1 cut(s) | 549 |
| FokI | GGATG | 2 cut(s) | 1011, 1040 |
| FspAI | RTGCGCAY | 1 cut(s) | 1027 |
| FspBI | CTAG | 2 cut(s) | 735, 818 |
| FspI | TGCGCA | 1 cut(s) | 1027 |
| GlaI | GCGC | 2 cut(s) | 797, 1027 |
| GsaI | CCCAGC | 2 cut(s) | 1148, 1229 |
| GsuI | CTGGAG | 2 cut(s) | 1221, 1498 |
| HaeII | RGCGCY | 1 cut(s) | 799 |
| HaeIII | GGCC | 5 cut(s) | 168, 234, 1074, 1179, 1441 |
| HapII | CCGG | 6 cut(s) | 30, 660, 845, 1289, 1369, 1398 |
| HhaI | GCGC | 2 cut(s) | 798, 1028 |
| Hin1I | GRCGYC | 2 cut(s) | 796, 1412 |
| Hin6I | GCGC | 2 cut(s) | 796, 1026 |
| HinP1I | GCGC | 2 cut(s) | 796, 1026 |
| HincII | GTYRAC | 1 cut(s) | 1416 |
| HindII | GTYRAC | 1 cut(s) | 1416 |
| HindIII | AAGCTT | 1 cut(s) | 252 |
| HinfI | GANTC | 4 cut(s) | 915, 1113, 1220, 1364 |
| HpaII | CCGG | 6 cut(s) | 30, 660, 845, 1289, 1369, 1398 |
| HphI | GGTGA | 2 cut(s) | 470, 1205 |
| Hpy166II | GTNNAC | 3 cut(s) | 1332, 1403, 1416 |
| Hpy188I | TCNGA | 4 cut(s) | 441, 714, 832, 1276 |
| Hpy188III | TCNNGA | 9 cut(s) | 194, 219, 773, 883, 924, 1205, 1238, 1385, 1477 |
| Hpy8I | GTNNAC | 3 cut(s) | 1332, 1403, 1416 |
| Hpy99I | CGWCG | 1 cut(s) | 1414 |
| HpyAV | CCTTC | 3 cut(s) | 989, 1320, 1430 |
| HpyCH4III | ACNGT | 4 cut(s) | 230, 464, 1217, 1256 |
| HpyCH4IV | ACGT | 3 cut(s) | 638, 897, 1412 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 102, 611, 731, 802, 811, 1047, 1488 |
| HpyF3I | CTNAG | 3 cut(s) | 111, 438, 1518 |
| HpySE526I | ACGT | 3 cut(s) | 638, 897, 1412 |
| Hsp92I | GRCGYC | 2 cut(s) | 796, 1412 |
| HspAI | GCGC | 2 cut(s) | 796, 1026 |
| KasI | GGCGCC | 1 cut(s) | 795 |
| Kzo9I | GATC | 2 cut(s) | 595, 714 |
| LguI | GCTCTTC | 2 cut(s) | 351, 549 |
| LmnI | GCTCC | 7 cut(s) | 203, 294, 591, 656, 1240, 1479, 1501 |
| Lsp1109I | GCAGC | 9 cut(s) | 145, 343, 541, 626, 670, 801, 976, 1478, 1506 |
| LweI | GCATC | 3 cut(s) | 237, 1013, 1513 |
| MaeI | CTAG | 2 cut(s) | 735, 818 |
| MaeII | ACGT | 3 cut(s) | 638, 897, 1412 |
| MaeIII | GTNAC | 8 cut(s) | 310, 449, 458, 619, 695, 1170, 1205, 1291 |
| MalI | GATC | 2 cut(s) | 597, 716 |
| MbiI | CCGCTC | 1 cut(s) | 542 |
| MboI | GATC | 2 cut(s) | 595, 714 |
| MboII | GAAGA | 6 cut(s) | 91, 338, 536, 590, 1263, 1497 |
| MflI | RGATCY | 1 cut(s) | 714 |
| MhlI | GDGCHC | 4 cut(s) | 23, 499, 1237, 1334 |
| MlsI | TGGCCA | 1 cut(s) | 234 |
| MluCI | AATT | 8 cut(s) | 7, 214, 223, 433, 751, 826, 862, 1391 |
| MluNI | TGGCCA | 1 cut(s) | 234 |
| Mly113I | GGCGCC | 1 cut(s) | 796 |
| MmeI | TCCRAC | 1 cut(s) | 855 |
| Mox20I | TGGCCA | 1 cut(s) | 234 |
| Mph1103I | ATGCAT | 1 cut(s) | 1196 |
| MscI | TGGCCA | 1 cut(s) | 234 |
| MseI | TTAA | 4 cut(s) | 135, 650, 701, 749 |
| MslI | CAYNNNNRTG | 2 cut(s) | 16, 606 |
| Msp20I | TGGCCA | 1 cut(s) | 234 |
| MspA1I | CMGCKG | 3 cut(s) | 158, 617, 814 |
| MspI | CCGG | 6 cut(s) | 30, 660, 845, 1289, 1369, 1398 |
| MspR9I | CCNGG | 6 cut(s) | 968, 1080, 1137, 1289, 1369, 1398 |
| Mva1269I | GAATGC | 2 cut(s) | 848, 1378 |
| MvaI | CCWGG | 3 cut(s) | 968, 1080, 1137 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 102, 611, 731, 802, 811, 1047, 1488 |
| NarI | GGCGCC | 1 cut(s) | 796 |
| NciI | CCSGG | 3 cut(s) | 1289, 1369, 1398 |
| NdeI | CATATG | 1 cut(s) | 549 |
| NdeII | GATC | 2 cut(s) | 595, 714 |
| NheI | GCTAGC | 2 cut(s) | 734, 817 |
| NlaIV | GGNNCC | 4 cut(s) | 658, 797, 1084, 1141 |
| NmeAIII | GCCGAG | 1 cut(s) | 1155 |
| NmuCI | GTSAC | 5 cut(s) | 449, 458, 1170, 1205, 1291 |
| NsbI | TGCGCA | 1 cut(s) | 1027 |
| NsiI | ATGCAT | 1 cut(s) | 1196 |
| NspI | RCATGY | 4 cut(s) | 374, 981, 1198, 1474 |
| PaeI | GCATGC | 1 cut(s) | 1198 |
| PagI | TCATGA | 1 cut(s) | 882 |
| PciI | ACATGT | 2 cut(s) | 370, 1470 |
| PciSI | GCTCTTC | 2 cut(s) | 351, 549 |
| PctI | GAATGC | 2 cut(s) | 848, 1378 |
| PfeI | GAWTC | 4 cut(s) | 915, 1113, 1220, 1364 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 789 |
| PfoI | TCCNGGA | 1 cut(s) | 1367 |
| PluTI | GGCGCC | 1 cut(s) | 799 |
| PscI | ACATGT | 2 cut(s) | 370, 1470 |
| Psp6I | CCWGG | 3 cut(s) | 966, 1078, 1135 |
| PspFI | CCCAGC | 2 cut(s) | 1144, 1225 |
| PspGI | CCWGG | 3 cut(s) | 966, 1078, 1135 |
| PspN4I | GGNNCC | 4 cut(s) | 658, 797, 1084, 1141 |
| PspPI | GGNCC | 4 cut(s) | 1073, 1083, 1346, 1439 |
| PstI | CTGCAG | 3 cut(s) | 994, 1063, 1496 |
| PsuI | RGATCY | 1 cut(s) | 714 |
| PvuII | CAGCTG | 1 cut(s) | 617 |
| RsaI | GTAC | 2 cut(s) | 116, 1186 |
| RsaNI | GTAC | 2 cut(s) | 115, 1185 |
| RseI | CAYNNNNRTG | 2 cut(s) | 16, 606 |
| SapI | GCTCTTC | 2 cut(s) | 351, 549 |
| SaqAI | TTAA | 4 cut(s) | 135, 650, 701, 749 |
| Sau3AI | GATC | 2 cut(s) | 595, 714 |
| Sau96I | GGNCC | 4 cut(s) | 1073, 1083, 1346, 1439 |
| ScaI | AGTACT | 1 cut(s) | 116 |
| ScrFI | CCNGG | 6 cut(s) | 968, 1080, 1137, 1289, 1369, 1398 |
| SduI | GDGCHC | 4 cut(s) | 23, 499, 1237, 1334 |
| SfaNI | GCATC | 3 cut(s) | 237, 1013, 1513 |
| SfcI | CTRYAG | 3 cut(s) | 990, 1059, 1492 |
| SfoI | GGCGCC | 1 cut(s) | 797 |
| SinI | GGWCC | 2 cut(s) | 1083, 1346 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 16, 606 |
| SmlI | CTYRAG | 1 cut(s) | 1383 |
| SmoI | CTYRAG | 1 cut(s) | 1383 |
| SphI | GCATGC | 1 cut(s) | 1198 |
| Sse9I | AATT | 8 cut(s) | 7, 214, 223, 433, 751, 826, 862, 1391 |
| SsiI | CCGC | 4 cut(s) | 50, 156, 540, 812 |
| SspDI | GGCGCC | 1 cut(s) | 795 |
| SspMI | CTAG | 2 cut(s) | 735, 818 |
| StyD4I | CCNGG | 6 cut(s) | 966, 1078, 1135, 1287, 1367, 1396 |
| TaaI | ACNGT | 4 cut(s) | 230, 464, 1217, 1256 |
| TaiI | ACGT | 3 cut(s) | 641, 900, 1415 |
| TaqI | TCGA | 1 cut(s) | 259 |
| TasI | AATT | 8 cut(s) | 7, 214, 223, 433, 751, 826, 862, 1391 |
| TatI | WGTACW | 1 cut(s) | 114 |
| TauI | GCSGC | 2 cut(s) | 53, 158 |
| TfiI | GAWTC | 4 cut(s) | 915, 1113, 1220, 1364 |
| Tru1I | TTAA | 4 cut(s) | 135, 650, 701, 749 |
| Tru9I | TTAA | 4 cut(s) | 135, 650, 701, 749 |
| TscAI | CASTG | 3 cut(s) | 806, 879, 1514 |
| TseFI | GTSAC | 5 cut(s) | 449, 458, 1170, 1205, 1291 |
| TseI | GCWGC | 9 cut(s) | 158, 356, 554, 614, 683, 814, 989, 1491, 1494 |
| Tsp45I | GTSAC | 5 cut(s) | 449, 458, 1170, 1205, 1291 |
| TspDTI | ATGAA | 8 cut(s) | 338, 438, 446, 536, 590, 617, 1190, 1404 |
| TspGWI | ACGGA | 1 cut(s) | 1303 |
| TspRI | CASTG | 3 cut(s) | 806, 879, 1514 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 789 |
| VneI | GTGCAC | 1 cut(s) | 1330 |
| VpaK11BI | GGWCC | 2 cut(s) | 1083, 1346 |
| XapI | RAATTY | 3 cut(s) | 7, 433, 1391 |
| XceI | RCATGY | 4 cut(s) | 374, 981, 1198, 1474 |
| XspI | CTAG | 2 cut(s) | 735, 818 |
| ZraI | GACGTC | 1 cut(s) | 1413 |
| ZrmI | AGTACT | 1 cut(s) | 116 |
| Zsp2I | ATGCAT | 1 cut(s) | 1196 |