Rorug01G0399600

SWI SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Reverse (-)
50800595 .. 50808515
7921 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0399600.1

Sequence Viewer

Length: 3852 bp
ATGAAGATAAAGAAGAGGCATCTGTATCGAGCTAAGCATCCATTTGATGCTCATCTCTTTGAGGCTCTTTGCTGTGGATCATGGAAAGGTGTGGAACTTCTAAGAATTAGCAATGGAACTATGAACATGAAATTCATAGACCATCCATGTGTGATTCAGGATAAAGGTCCATTTGCCAACCTTCGAATAAAATCAAGAAGAGCAACTTTATATGATTGCATTTGCTTGTTGAGGCCTGGTGTGGATATCTGTGTGCTTTCAAACTCTGATCATACAGAGAGTTCGGATAAGGAAAGGCGAGATCCGGTGTGGGTTGATGCTAGAATAAGTTCTATCGAAAGGGAGCCTCATGACTCTCAATGCTCATGCCAGTTTCATGTCAACTTTTATGTTAACCAAGGACCTCTTGGTTCAGAGAGAGCAACACTTAAAAAAGAAACTGAAGTTATTGGAATTGATCAGGTTTTCATCTTGCAAAGGCTTGATAGGAATTCTTGTAAAAATCAGTACTACCGTTGGGATCGCTCTGTGGACTGCTCTACTCTGCCAAACACTAAATTGTTATTGGGGAAATTCTTATCCGACTTGTCATGGTTGCTTGTTACATCTTCCTTGAAGCAGATTGTATTTGATGTAAGATCAGTGCAGAACAAGATTGTGTATCAAATTTCTGGTGGTTATGATGACACAACTCCATCAAACTCTGAAAACTCTTTTAAAGCTGTGAATTTCGGAGTAGAGAATGGGATCCCGGTACCTATAATAGTTCAGTTGGTTCCAGATGATGCTATTGGGGGTGATCCTACTTGTGACATGCATGAAGATAGACCATCTCCAATTTCTGAGGTTCCAGAATTGCGGCGTTCCAAGCGTCGAAAGATACAACCTGATCGTTTCCTTGCATGTGATGCTCCCTCTGAGATACAAATAGGCCCCATTCGAAGCAGGCCATATAAGATAGATCAATCCCAAGATGATTCTGATGACGAATTGTACTTACCACTGTCATACCTGTTTCGTAAGAAGGCAAGCAACTCTTTGGAAGAGGATAGTACTGAGGCAGAGCAAAATGCTGGTTCTAAGAGGAAGCGATCAAATCCCAGTGACAATGATGATCTATTTGAATGCAAAGAAAGCAAGATTAAGTGGATGAAAGTGAAATCAGGTGTGGCTAAAAATAAGACGAAGAAACATCGAGCTGATCAACTTGCCATTGTTCCTGCGTCTGTCAAAAGTGATCAGCTAACCCTTGGAAACTTCCCTCCAAATGCCAATGGTCCTGCAAATCGTTCAAAAGAAAGTGGTGAATTTCCTACCAAGCATTATTATCGTTTCAGTACTTCTAAAGCACAGAAACAGAAAAGAAACAAAATTGCTGGCTTGGAAGACATGGATGTTCAAACTAAATGGGATGGGGGTGCATCCTCTAGTAGATTTCCGAGAAGAGGCTATCATTACGCATATCATCATCCCTCTATACGATCAAAAAGGACGGATCGGTATACTGGAGCTTATTCAAAGAGGTCATTAAATGCAGGTGCATACAAGGAGCTGATAAATAAGTTCTTGAAAGACATGGATTGCTCAAACAAGCAAGAACCAAACATTATGGACCAGTGGAAAGATTTCAAGGCAAACAAGAACTCTGACCAAAAGGACGAAACTGAAATGCCAGAAGATGAGGAGGAGGAGGAAATGTCTGAGGAGGATATGTTGTGGAAAGAATTTGAATTAGTAATGGCATCATGTTATCTTCTTGGTGATGAGGAATCAAATGGTGCTGCTTCAGGTAAATTTGCACAAAAGTCAGGTCCAGGTTGCCAGCATGACTTCACTCTCGATGAAGAAATTGGGCTTAAGTGCATTATATGTGGCTTTGTGAAGACTGAAATCAAACATGTTACACCCCCCTTTGTGCAAAACCCATATGGGTTCACAGATGATAAAAAACCAAATGAAGAAGATCCACCACCAGATCCTAAAAGAGCTGAATATGAGGAGTTCGATTTCTTCCACAAACGTGATAACCCTGTGGATGAGCATATTTCAGAAGAAAATGACAATGTTTGGGCTTTAATTCCTGAACTTAGAAAGAAACTGTTATTCCACCAGAAGAAGGCTTTTGAGTTTTTATGGAAGAATATTGCAGGATCTATGGAACCAGCATTGATGGAAAAGAAATCCAAGAGAAATGGTGGCTGTGTTATATCTCATACTCCTGGAGCTGGGAAAACTTTTTTGATCATTGCATTTCTTGTTAGCTACCTGAAGTTATTCCCTGGAAAACGACCTTTAGTCCTTGCTCCAAAGACAACACTCTACACCTGGTACAAGGAATTCATTAAATGGAAGATCCCTATACCGGTTTATCTAATTCACGGTCGTAGAACCTATAGAGTGTTTAGGAATAAGTCAGTAACCTATACAAGAGGCCCGAAGCCAACTGACGATGTGATGCATGTTCTCGATTGCCTAGAAAAGATACAGAAGTGGCATGCACAACCTAGTGTTCTTGTCATGGGGTATACTTCTTTCCTAACATTGATGCGTGAAGACTCAAAGTTTGTCCACAGAAGATTTATGGCTCAAGTCCTGAGGGAAAGTCCAGGGCTCCTAGTTCTAGACGAAGGGCACAACCCCAGAAGTACCAAATCAAGGTTGAGGAAAGGATTGATGAAAGTTGAAACTGATTTGAGAATATTGCTTTCAGGTACTTTGTTTCAGAACAATTTCTGTGAATACTTCAACACACTTTGTTTGGCAAGGCCGAAGTTTGTGAATGAAGTTTTGAAGTCATTGGACCCAAAATACAGAAGGAAAAAGAAGGCATTGAAAGACAAAGCACGCCATTTGATGGAAGCTCGAGCCAGAAAGTTGTTCTTGGATAAAATTGCCAAGAAAATTGATTCAAATGAAGAAGAAGATCAGAGGATCGAAGGTCTCAACAAGCTGAGAAAGATAACAAACAGATTTATAGATGTGTATGAAGGTGGAAATTCAGACACCCTTCCCGGTCTACAGATTTACACCTTGCTGATGAATACCACTGACATTCAACAAGTGATTTTGGATAGACTGCAACAAATAATGTCCAAGTACAAAGGGTATCCCTTGGAACTAGAACTTTTGATCACTCTTGGATCAATACATCCTTGGCTAATCAAAACTGCAGCTTGTGCTGATAAGTTCTTTAGTCCCCAAGAACTGATGGAGCTTGAGCAATACAAGTATGATTTGCACAAAGGGTCAAAAGTCAAGTTTGTTTTGAACCTGGTTTACCGTGTTACTCGGAAAGAGAAGGTCTTGATTTTCTGCCACAACATTGCACCTGTGAGACTGTTTCTAGAATTGTTTGAGAGGGTCTTTCAGTGGGAGCGAGGCAGAGAAGTTTTGGTTCTTACCGGGGATCTGGAGTTATTTGAACGTGGAAAGGTTATGGACAAATTTGAAGAACCAGGTGGAGCCTCAAAGGTTCTGCTTGCATCTATCACTGCTTGTGCTGAAGGCATTAGTCTGACAGCTGCATCTAGGGTTATCTTGTTGGACTCCGAATGGAATCCTTCCAAGACGAAGCAAGCTATAGCACGAGCTTTTAGGCCTGGTCAGCAAAAGGTTGTGTATGTTTATCAGCTATTGGCAACAGGAACGCTCGAAGAAGACAAGTATAGAAGGACTACTTGGAAAGAATGGGTATCCAGCATGATATTCAGTGAGGCATTTGTGGAGGATCCTTCTCGCTGGCAAGCTGAGAAGATTGAAGATGATATATTGAGGGAAATGGTGGGTGAAGACAAGAGTAAAGCATTCCATATGATCATGAAAAATGAAAAGGCTTCAACACATACTTCATAG

Protein Analysis

1283

Amino Acids

147.81

Weight (kDa)

8.85

Isoelectric Point (pI)

48.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ResIII PF04851 699 - 906 2.9e-06 Type III restriction enzyme, res subunit
SNF2-rel_dom PF00176 703 - 968 4.1e-20 SNF2-related domain
Helicase_C PF00271 1084 - 1201 4.4e-17 Helicase conserved C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1526
Acc36I ACCTGC 1 cut(s) 1526
Acc65I GGTACC 1 cut(s) 754
AccB1I GGYRCC 1 cut(s) 754
AccB7I CCANNNNNTGG 1 cut(s) 2854
AccI GTMKAC 3 cut(s) 1502, 2525, 3016
AciI CCGC 1 cut(s) 859
AcuI CTGAAG 4 cut(s) 462, 1770, 2288, 3522
AfaI GTAC 9 cut(s) 509, 756, 995, 1054, 1339, 2330, 2647, 2713, 3098
AfiI CCNNNNNNNGG 6 cut(s) 1445, 2116, 2225, 2362, 2655, 2854
AflII CTTAAG 1 cut(s) 1856
AflIII ACRYGT 1 cut(s) 1897
AgeI ACCGGT 1 cut(s) 2362
AhdI GACNNNNNGTC 1 cut(s) 2294
AjnI CCWGG 9 cut(s) 235, 1813, 2218, 2278, 2324, 2605, 3270, 3454, 3598
AjuI GAANNNNNNNTTGG 2 cut(s) 3661, 3693
AleI CACNNNNGTG 1 cut(s) 2019
Alw26I GTCTC 2 cut(s) 2945, 3328
Ama87I CYCGRG 1 cut(s) 2862
AoxI GGCC 6 cut(s) 233, 931, 947, 2431, 2765, 3596
ApeKI GCWGC 3 cut(s) 1781, 3170, 3521
ArsI GACNNNNNNTTYG 4 cut(s) 1795, 1827, 2546, 2578
AsiGI ACCGGT 1 cut(s) 2362
Asp700I GAANNNNTTC 4 cut(s) 328, 1625, 2273, 2729
Asp718I GGTACC 1 cut(s) 754
AspS9I GGNCC 8 cut(s) 167, 401, 932, 1277, 1612, 1811, 2432, 2800
AsuC2I CCSGG 3 cut(s) 752, 3012, 3403
AsuHPI GGTGA 4 cut(s) 809, 1316, 1772, 3797
AsuII TTCGAA 2 cut(s) 184, 940
AvaI CYCGRG 1 cut(s) 2862
AvaII GGWCC 6 cut(s) 167, 401, 1277, 1612, 1811, 2800
AxyI CCTNAGG 1 cut(s) 2594
BaeGI GKGCMC 1 cut(s) 2634
BaeI ACNNNNGTAYC 2 cut(s) 2474, 2507
BamHI GGATCC 2 cut(s) 747, 3727
BanI GGYRCC 1 cut(s) 754
BanII GRGCYC 1 cut(s) 2613
BauI CACGAG 1 cut(s) 3585
BbsI GAAGAC 5 cut(s) 1392, 1889, 2559, 3663, 3795
BbvI GCAGC 3 cut(s) 1768, 3182, 3508
BccI CCATC 7 cut(s) 150, 703, 838, 1406, 2164, 2848, 3202
BcgI CGANNNNNNTGC 4 cut(s) 8, 42, 1310, 1344
BciT130I CCWGG 9 cut(s) 237, 1815, 2220, 2280, 2326, 2607, 3272, 3456, 3600
BciVI GTATCC 2 cut(s) 3117, 3703
BclI TGATCA 7 cut(s) 268, 457, 1201, 1237, 2241, 3129, 3813
BcnI CCSGG 3 cut(s) 752, 3012, 3403
BcoDI GTCTC 2 cut(s) 2945, 3328
BfaI CTAG 9 cut(s) 321, 1428, 2474, 2505, 2615, 2621, 3119, 3344, 3528
BfmI CTRYAG 4 cut(s) 2392, 3017, 3168, 3579
BfrI CTTAAG 1 cut(s) 1856
BfuAI ACCTGC 1 cut(s) 1526
BfuI GTATCC 2 cut(s) 3117, 3703
BisI GCNGC 4 cut(s) 860, 1782, 3171, 3522
BlpI GCTNAGC 1 cut(s) 33
BlsI GCNGC 4 cut(s) 861, 1783, 3172, 3523
BmcAI AGTACT 3 cut(s) 509, 1054, 1339
Bme18I GGWCC 6 cut(s) 167, 401, 1277, 1612, 1811, 2800
BmeRI GACNNNNNGTC 1 cut(s) 2294
BmeT110I CYCGRG 1 cut(s) 2862
BmgT120I GGNCC 8 cut(s) 167, 401, 932, 1277, 1612, 1811, 2432, 2800
BmrI ACTGGG 1 cut(s) 1095
BmuI ACTGGG 1 cut(s) 1095
BpiI GAAGAC 5 cut(s) 1392, 1889, 2559, 3663, 3795
BpmI CTGGAG 3 cut(s) 1527, 2241, 3431
Bpu1102I GCTNAGC 1 cut(s) 33
Bpu14I TTCGAA 2 cut(s) 184, 940
BpuEI CTTGAG 2 cut(s) 2571, 3236
BpuMI CCSGG 3 cut(s) 752, 3012, 3403
BsaBI GATNNNNATC 1 cut(s) 51
BsaI GGTCTC 1 cut(s) 2945
BsaJI CCNNGG 7 cut(s) 397, 1249, 2278, 2606, 3111, 3152, 3402
BsaWI WCCGGW 2 cut(s) 304, 2362
BsaXI ACNNNNNCTCC 4 cut(s) 1682, 1697, 1712, 1727
Bsc4I CCNNNNNNNGG 6 cut(s) 1445, 2116, 2225, 2362, 2655, 2854
Bse118I RCCGGY 1 cut(s) 2362
Bse1I ACTGG 4 cut(s) 370, 1101, 1510, 1615
Bse21I CCTNAGG 1 cut(s) 2594
Bse3DI GCAATG 3 cut(s) 118, 2244, 3321
Bse8I GATNNNNATC 1 cut(s) 51
BseBI CCWGG 9 cut(s) 237, 1815, 2220, 2280, 2326, 2607, 3272, 3456, 3600
BseDI CCNNGG 7 cut(s) 397, 1249, 2278, 2606, 3111, 3152, 3402
BseGI GGATG 9 cut(s) 37, 142, 1155, 1399, 1417, 1421, 1468, 2041, 3148
BseJI GATNNNNATC 1 cut(s) 51
BseLI CCNNNNNNNGG 6 cut(s) 1445, 2116, 2225, 2362, 2655, 2854
BseMI GCAATG 3 cut(s) 118, 2244, 3321
BseMII CTCAG 7 cut(s) 834, 909, 1047, 1692, 2585, 2942, 3738
BseNI ACTGG 4 cut(s) 370, 1101, 1510, 1615
BseRI GAGGAG 5 cut(s) 1697, 1700, 1703, 1718, 2012
BseSI GKGCMC 1 cut(s) 2634
BseXI GCAGC 3 cut(s) 1768, 3182, 3508
BseYI CCCAGC 1 cut(s) 2225
BsgI GTGCAG 1 cut(s) 665
Bsh1285I CGRYCG 1 cut(s) 2383
BshFI GGCC 6 cut(s) 235, 933, 949, 2433, 2767, 3598
BshNI GGYRCC 1 cut(s) 754
BshTI ACCGGT 1 cut(s) 2362
BsiEI CGRYCG 1 cut(s) 2383
BsiHKCI CYCGRG 1 cut(s) 2862
BsiSI CCGG 5 cut(s) 305, 752, 2363, 3012, 3402
BslFI GGGAC 1 cut(s) 3180
BslI CCNNNNNNNGG 6 cut(s) 1445, 2116, 2225, 2362, 2655, 2854
BsmAI GTCTC 2 cut(s) 2945, 3328
BsmFI GGGAC 1 cut(s) 3180
BsmI GAATGC 2 cut(s) 1130, 3803
BsnI GGCC 6 cut(s) 235, 933, 949, 2433, 2767, 3598
Bso31I GGTCTC 1 cut(s) 2945
BsoBI CYCGRG 1 cut(s) 2862
Bsp119I TTCGAA 2 cut(s) 184, 940
Bsp1286I GDGCHC 2 cut(s) 2613, 2634
Bsp1720I GCTNAGC 1 cut(s) 33
BspACI CCGC 1 cut(s) 859
BspANI GGCC 6 cut(s) 235, 933, 949, 2433, 2767, 3598
BspCNI CTCAG 7 cut(s) 835, 910, 1048, 1693, 2586, 2943, 3739
BspHI TCATGA 2 cut(s) 349, 3816
BspMAI CTGCAG 1 cut(s) 3172
BspMI ACCTGC 1 cut(s) 1526
BspQI GCTCTTC 1 cut(s) 193
BspT104I TTCGAA 2 cut(s) 184, 940
BspT107I GGYRCC 1 cut(s) 754
BspTI CTTAAG 1 cut(s) 1856
BspTNI GGTCTC 1 cut(s) 2945
BsrDI GCAATG 3 cut(s) 118, 2244, 3321
BsrFI RCCGGY 1 cut(s) 2362
BsrI ACTGG 4 cut(s) 370, 1101, 1510, 1615
BssAI RCCGGY 1 cut(s) 2362
BssECI CCNNGG 7 cut(s) 397, 1249, 2278, 2606, 3111, 3152, 3402
BssNAI GTATAC 2 cut(s) 1503, 2526
BssSI CACGAG 1 cut(s) 3585
BssT1I CCWWGG 4 cut(s) 397, 1249, 3111, 3152
Bst1107I GTATAC 2 cut(s) 1503, 2526
Bst2BI CACGAG 1 cut(s) 3585
Bst2UI CCWGG 9 cut(s) 237, 1815, 2220, 2280, 2326, 2607, 3272, 3456, 3600
Bst4CI ACNGT 6 cut(s) 515, 1005, 2100, 2381, 3281, 3339
Bst6I CTCTTC 4 cut(s) 8, 193, 1038, 1438
BstAFI CTTAAG 1 cut(s) 1856
BstAPI GCANNNNNTGC 2 cut(s) 908, 3176
BstBI TTCGAA 2 cut(s) 184, 940
BstF5I GGATG 9 cut(s) 37, 142, 1155, 1399, 1417, 1421, 1468, 2041, 3148
BstMAI GTCTC 2 cut(s) 2945, 3328
BstMCI CGRYCG 1 cut(s) 2383
BstMWI GCNNNNNNNGC 5 cut(s) 868, 908, 1134, 3176, 3604
BstNI CCWGG 9 cut(s) 237, 1815, 2220, 2280, 2326, 2607, 3272, 3456, 3600
BstNSI RCATGY 5 cut(s) 817, 906, 1901, 2462, 2498
BstSFI CTRYAG 4 cut(s) 2392, 3017, 3168, 3579
BstSLI GKGCMC 1 cut(s) 2634
BstV1I GCAGC 3 cut(s) 1768, 3182, 3508
BstV2I GAAGAC 5 cut(s) 1392, 1889, 2559, 3663, 3795
BstX2I RGATCY 8 cut(s) 301, 747, 1963, 1975, 2150, 2352, 3406, 3727
BstYI RGATCY 8 cut(s) 301, 747, 1963, 1975, 2150, 2352, 3406, 3727
BstZ17I GTATAC 2 cut(s) 1503, 2526
Bsu36I CCTNAGG 1 cut(s) 2594
BsuI GTATCC 2 cut(s) 3117, 3703
BsuRI GGCC 6 cut(s) 235, 933, 949, 2433, 2767, 3598
BtsCI GGATG 9 cut(s) 37, 142, 1155, 1399, 1417, 1421, 1468, 2041, 3148
BtsI GCAGTG 1 cut(s) 3489
BtsIMutI CAGTG 8 cut(s) 648, 1001, 1108, 1622, 3045, 3374, 3489, 3715
BveI ACCTGC 1 cut(s) 1526
CciI TCATGA 2 cut(s) 349, 3816
Cfr10I RCCGGY 1 cut(s) 2362
Cfr13I GGNCC 8 cut(s) 167, 401, 932, 1277, 1612, 1811, 2432, 2800
CseI GACGC 2 cut(s) 860, 1212
CsiI ACCWGGT 3 cut(s) 2324, 3270, 3454
Csp6I GTAC 9 cut(s) 508, 755, 994, 1053, 1338, 2329, 2646, 2712, 3097
CspAI ACCGGT 1 cut(s) 2362
CviQI GTAC 9 cut(s) 508, 755, 994, 1053, 1338, 2329, 2646, 2712, 3097
DraI TTTAAA 1 cut(s) 718
DriI GACNNNNNGTC 1 cut(s) 2294
Eam1104I CTCTTC 4 cut(s) 8, 193, 1038, 1438
Eam1105I GACNNNNNGTC 1 cut(s) 2294
EarI CTCTTC 4 cut(s) 8, 193, 1038, 1438
Eco130I CCWWGG 4 cut(s) 397, 1249, 3111, 3152
Eco147I AGGCCT 2 cut(s) 235, 3598
Eco24I GRGCYC 1 cut(s) 2613
Eco31I GGTCTC 1 cut(s) 2945
Eco32I GATATC 1 cut(s) 247
Eco47I GGWCC 6 cut(s) 167, 401, 1277, 1612, 1811, 2800
Eco57I CTGAAG 4 cut(s) 462, 1770, 2288, 3522
Eco81I CCTNAGG 1 cut(s) 2594
Eco88I CYCGRG 1 cut(s) 2862
EcoO109I RGGNCCY 2 cut(s) 401, 932
EcoRI GAATTC 2 cut(s) 490, 2336
EcoRII CCWGG 9 cut(s) 235, 1813, 2218, 2278, 2324, 2605, 3270, 3454, 3598
EcoRV GATATC 1 cut(s) 247
EcoT14I CCWWGG 4 cut(s) 397, 1249, 3111, 3152
EcoT22I ATGCAT 2 cut(s) 819, 2460
EcoT38I GRGCYC 1 cut(s) 2613
ErhI CCWWGG 4 cut(s) 397, 1249, 3111, 3152
FaqI GGGAC 1 cut(s) 3180
FauNDI CATATG 2 cut(s) 1927, 3810
FbaI TGATCA 7 cut(s) 268, 457, 1201, 1237, 2241, 3129, 3813
FblI GTMKAC 3 cut(s) 1502, 2525, 3016
Fnu4HI GCNGC 4 cut(s) 860, 1782, 3171, 3522
FokI GGATG 9 cut(s) 24, 129, 1162, 1406, 1408, 1424, 1455, 2048, 3135
FriOI GRGCYC 1 cut(s) 2613
Fsp4HI GCNGC 4 cut(s) 860, 1782, 3171, 3522
FspBI CTAG 9 cut(s) 321, 1428, 2474, 2505, 2615, 2621, 3119, 3344, 3528
GluI GCNGC 4 cut(s) 860, 1782, 3171, 3522
GsaI CCCAGC 1 cut(s) 2229
GsuI CTGGAG 3 cut(s) 1527, 2241, 3431
HaeIII GGCC 6 cut(s) 235, 933, 949, 2433, 2767, 3598
HapII CCGG 5 cut(s) 305, 752, 2363, 3012, 3402
HgaI GACGC 2 cut(s) 860, 1212
HincII GTYRAC 2 cut(s) 382, 394
HindII GTYRAC 2 cut(s) 382, 394
HinfI GANTC 8 cut(s) 154, 353, 977, 1769, 2555, 2906, 3545, 3556
HpaI GTTAAC 1 cut(s) 394
HpaII CCGG 5 cut(s) 305, 752, 2363, 3012, 3402
HphI GGTGA 4 cut(s) 809, 1316, 1772, 3797
Hpy166II GTNNAC 9 cut(s) 382, 394, 532, 1503, 1935, 2526, 2569, 3017, 3277
Hpy8I GTNNAC 9 cut(s) 382, 394, 532, 1503, 1935, 2526, 2569, 3017, 3277
Hpy99I CGWCG 1 cut(s) 876
HpyCH4III ACNGT 6 cut(s) 515, 1005, 2100, 2381, 3281, 3339
HpyCH4IV ACGT 2 cut(s) 2020, 3424
HpyF10VI GCNNNNNNNGC 5 cut(s) 868, 908, 1134, 3176, 3604
HpySE526I ACGT 2 cut(s) 2020, 3424
KpnI GGTACC 1 cut(s) 758
Ksp22I TGATCA 7 cut(s) 268, 457, 1201, 1237, 2241, 3129, 3813
KspAI GTTAAC 1 cut(s) 394
LguI GCTCTTC 1 cut(s) 193
Lsp1109I GCAGC 3 cut(s) 1768, 3182, 3508
MabI ACCWGGT 3 cut(s) 2324, 3270, 3454
MaeI CTAG 9 cut(s) 321, 1428, 2474, 2505, 2615, 2621, 3119, 3344, 3528
MaeII ACGT 2 cut(s) 2020, 3424
MaeIII GTNAC 6 cut(s) 601, 809, 1103, 1900, 2416, 3283
MflI RGATCY 8 cut(s) 301, 747, 1963, 1975, 2150, 2352, 3406, 3727
MhlI GDGCHC 2 cut(s) 2613, 2634
MlyI GAGTC 3 cut(s) 347, 2549, 3539
MmeI TCCRAC 2 cut(s) 606, 3522
Mph1103I ATGCAT 2 cut(s) 819, 2460
MroXI GAANNNNTTC 4 cut(s) 328, 1625, 2273, 2729
MseI TTAA 8 cut(s) 393, 429, 717, 1143, 1529, 1857, 2075, 2343
MslI CAYNNNNRTG 2 cut(s) 147, 2019
MspA1I CMGCKG 1 cut(s) 3521
MspCI CTTAAG 1 cut(s) 1856
MspI CCGG 5 cut(s) 305, 752, 2363, 3012, 3402
Mva1269I GAATGC 2 cut(s) 1130, 3803
MvaI CCWGG 9 cut(s) 237, 1815, 2220, 2280, 2326, 2607, 3272, 3456, 3600
MwoI GCNNNNNNNGC 5 cut(s) 868, 908, 1134, 3176, 3604
NciI CCSGG 3 cut(s) 752, 3012, 3403
NdeI CATATG 2 cut(s) 1927, 3810
NmuCI GTSAC 2 cut(s) 809, 1103
NsiI ATGCAT 2 cut(s) 819, 2460
NspI RCATGY 5 cut(s) 817, 906, 1901, 2462, 2498
NspV TTCGAA 2 cut(s) 184, 940
OliI CACNNNNGTG 1 cut(s) 2019
PaeI GCATGC 1 cut(s) 2498
PaeR7I CTCGAG 1 cut(s) 2862
PagI TCATGA 2 cut(s) 349, 3816
PaqCI CACCTGC 1 cut(s) 1526
PceI AGGCCT 2 cut(s) 235, 3598
PciI ACATGT 1 cut(s) 1897
PciSI GCTCTTC 1 cut(s) 193
PctI GAATGC 2 cut(s) 1130, 3803
PdmI GAANNNNTTC 4 cut(s) 328, 1625, 2273, 2729
PfeI GAWTC 5 cut(s) 154, 977, 1769, 2906, 3556
PflMI CCANNNNNTGG 1 cut(s) 2854
PfoI TCCNGGA 1 cut(s) 2218
PinAI ACCGGT 1 cut(s) 2362
PkrI GCNGC 4 cut(s) 861, 1783, 3172, 3523
PleI GAGTC 3 cut(s) 347, 2549, 3539
PpsI GAGTC 3 cut(s) 347, 2549, 3539
PpuMI RGGWCCY 1 cut(s) 401
PscI ACATGT 1 cut(s) 1897
Psp5II RGGWCCY 1 cut(s) 401
Psp6I CCWGG 9 cut(s) 235, 1813, 2218, 2278, 2324, 2605, 3270, 3454, 3598
PspFI CCCAGC 1 cut(s) 2225
PspGI CCWGG 9 cut(s) 235, 1813, 2218, 2278, 2324, 2605, 3270, 3454, 3598
PspPI GGNCC 8 cut(s) 167, 401, 932, 1277, 1612, 1811, 2432, 2800
PspPPI RGGWCCY 1 cut(s) 401
PspXI VCTCGAGB 1 cut(s) 2862
PsrI GAACNNNNNNTAC 2 cut(s) 3260, 3292
PstI CTGCAG 1 cut(s) 3172
PsuI RGATCY 8 cut(s) 301, 747, 1963, 1975, 2150, 2352, 3406, 3727
PvuII CAGCTG 1 cut(s) 3521
RsaI GTAC 9 cut(s) 509, 756, 995, 1054, 1339, 2330, 2647, 2713, 3098
RsaNI GTAC 9 cut(s) 508, 755, 994, 1053, 1338, 2329, 2646, 2712, 3097
RseI CAYNNNNRTG 2 cut(s) 147, 2019
SapI GCTCTTC 1 cut(s) 193
SaqAI TTAA 8 cut(s) 393, 429, 717, 1143, 1529, 1857, 2075, 2343
SatI GCNGC 4 cut(s) 860, 1782, 3171, 3522
Sau96I GGNCC 8 cut(s) 167, 401, 932, 1277, 1612, 1811, 2432, 2800
ScaI AGTACT 3 cut(s) 509, 1054, 1339
SchI GAGTC 3 cut(s) 347, 2549, 3539
SduI GDGCHC 2 cut(s) 2613, 2634
SexAI ACCWGGT 3 cut(s) 2324, 3270, 3454
SfcI CTRYAG 4 cut(s) 2392, 3017, 3168, 3579
Sfr274I CTCGAG 1 cut(s) 2862
SfuI TTCGAA 2 cut(s) 184, 940
SinI GGWCC 6 cut(s) 167, 401, 1277, 1612, 1811, 2800
SlaI CTCGAG 1 cut(s) 2862
SmiMI CAYNNNNRTG 2 cut(s) 147, 2019
SmlI CTYRAG 4 cut(s) 1856, 2586, 2862, 3215
SmoI CTYRAG 4 cut(s) 1856, 2586, 2862, 3215
SphI GCATGC 1 cut(s) 2498
SseBI AGGCCT 2 cut(s) 235, 3598
SsiI CCGC 1 cut(s) 859
SspI AATATT 2 cut(s) 2143, 2700
SspMI CTAG 9 cut(s) 321, 1428, 2474, 2505, 2615, 2621, 3119, 3344, 3528
StuI AGGCCT 2 cut(s) 235, 3598
StyI CCWWGG 4 cut(s) 397, 1249, 3111, 3152
TaaI ACNGT 6 cut(s) 515, 1005, 2100, 2381, 3281, 3339
TaiI ACGT 2 cut(s) 2023, 3427
TatI WGTACW 5 cut(s) 507, 993, 1052, 1337, 3096
TauI GCSGC 1 cut(s) 862
TfiI GAWTC 5 cut(s) 154, 977, 1769, 2906, 3556
Tru1I TTAA 8 cut(s) 393, 429, 717, 1143, 1529, 1857, 2075, 2343
Tru9I TTAA 8 cut(s) 393, 429, 717, 1143, 1529, 1857, 2075, 2343
TscAI CASTG 8 cut(s) 648, 1008, 1108, 1622, 3052, 3374, 3496, 3715
TseFI GTSAC 2 cut(s) 809, 1103
TseI GCWGC 3 cut(s) 1781, 3170, 3521
Tsp45I GTSAC 2 cut(s) 809, 1103
TspGWI ACGGA 1 cut(s) 1508
TspRI CASTG 8 cut(s) 648, 1008, 1108, 1622, 3052, 3374, 3496, 3715
Van91I CCANNNNNTGG 1 cut(s) 2854
Vha464I CTTAAG 1 cut(s) 1856
VpaK11BI GGWCC 6 cut(s) 167, 401, 1277, 1612, 1811, 2800
XbaI TCTAGA 2 cut(s) 2620, 3343
XceI RCATGY 5 cut(s) 817, 906, 1901, 2462, 2498
XcmI CCANNNNNNNNNTGG 1 cut(s) 404
XhoI CTCGAG 1 cut(s) 2862
XmiI GTMKAC 3 cut(s) 1502, 2525, 3016
XmnI GAANNNNTTC 4 cut(s) 328, 1625, 2273, 2729
XspI CTAG 9 cut(s) 321, 1428, 2474, 2505, 2615, 2621, 3119, 3344, 3528
ZrmI AGTACT 3 cut(s) 509, 1054, 1339
Zsp2I ATGCAT 2 cut(s) 819, 2460
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.