FvH4_6g36420

Protein of unknown function, DUF547

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Reverse (-)
28641778 .. 28648705
6928 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g36420.t8

Sequence Viewer

Length: 1851 bp
ATGATGTGTGACTCACCGATTGTGCAAACTAAGTTGAGCCTAAGTGATTCTCTCTGTACATATTCACATTCTAGCATCTCATGCGATTCTGAATTTCGGTCAGAGGTTGGGAAAGATGACTCACTTTCAAAGGTGAGTAATCCTGATGAAGGTATTGGACGATTCGAATTATGCAATAAAAGTTCACGCCCGTACAAGTTCCAGCTTGAACAGGATGTACAAAGATTGGAACAGCAACTGCTTGAAGAAATAGAGCTACACGCGATTCTGGAAAATGCAATTGAGAAAAATGCTATGAAATTCTCCAGTTCATCATGCCTTCCTAATAATGCTCAAGAGCTCCTGAGTAATATTTCTGCGCTGGAGGTCACAGTTTCAGAACTAGAACAGGAGTTGGTTGCTTTGCATTTCCAACTAAGTCAAGAAAGAAATGAAAGAAGGCTCGCAGAATATCGTCTGAGGCATCCATCTCCCCAGTCCATGTCTCCTCGCCCTGCTGGCATCATGAAATTGCCGATCTCATCTCCTTCAAGGTGTACAGAGCAGTCAAGTCCTGAAATTCATCATTCTTCAGGAGATGACTCATGGCAGGAGCAACAAGATCAATCATCAGAAACTAGTGGGGAAACGTCTTCCTTGCAATCAGTTATTGAGAACACAGTGGACTCGGTTGCATGTGGCGTTGATATGAAAAGTTCAAGGAAGATGGGTCTCATATGTTTGCAACCTTCTGACTTCAGAAAGCTTCCTAAAGGGATGCCCACCAAGGGCCTCTGGGATCATCCTAATCAACTGTCAGAGGAGATGGTTAGATGCATGAAAAATATTTTCATATCTTTGGCTGATTCAGCTTTACCGTCAAAATCTTCTTCCCAAGAGAGCCACCTGTCACCTCTGTCTCCACGTGGACATCTTTCGAATTCCTCATGGTGGTCATCATCTGAACGATCGATGATTTCATCATGGGTGCAGAGCCCACAGGTAGATATACAAAGTAACTCCGAAGTATTAGCTTCAGAAAACGCCTGTGATCCATACAGAGTTAGAGGGAAACTGAGTTGGGCTGAAATTGGGAGATATGGATTAGCAACTGAAGTTTCTTGGATGTCGGTTGGTAAGAAGCAATTAGAATATGCTGCTGGTGCTCTGAGGAGGTTCAGAGTACTTGTAGAGCAACTGGCTAAAGTAAATCCTATCCATTTGAGCTGCGACGAGAAGCTTGCTTTCTGGATTAACTTGTATAATGCACTTATCATGCATGCTTACTTGGCTTATGGAGTCCCTAGAAGTGATTTGAAGCTTTTCTCTTTGATGCAAAAGGCAGCTTACACAGTCGGGGGACATTCTTACAGTGCCACTGTTATCGAGTATGTAATTTTGAAGACAAAACCTCCACTCCATAGACCACAAATTGCTTTGCTTCTTGCCCTTCATAAGCTAAAGGTTTCAGACGAGCAACGGAAGTCTGTAATTGATACATATGAACCACTTGTAACCTTTGCTTTAAGCAGTGGAATGTACTCCTCACCAGCGGTAAGGATTTATACTGCTAAAAATGTAAGGGAAGAACTTCAGGAAGCACAGCGTGATTTTGTTCGAGCGTCAGTTGGGGTTAGTAACAAGGGCAGGTTGTTGGTGCCCAAAATGTTGCACTGCTTTGCCAAGGGCTCTGTGGATGATTCAAATTTGGCTGTATGGATATCGCATTACCTCCCGCCCCACCAAGCTGTCTTTGTTGAACAATGCATATCACAAAGGCGACAAAGTCTGCTTGGTTCGCGCAACTGTGGCATTTTGCCATTTGATTCACGCTTTCGTTACTTATTTCTACCTGACAAAATTCCGGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

617

Amino Acids

69.09

Weight (kDa)

6.79

Isoelectric Point (pI)

71.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lzipper-MIP1 PF14389 63 - 142 5.3e-20 Leucine-zipper of ternary complex factor MIP1
DUF547 PF04784 400 - 443 5.2e-12 Protein of unknown function, DUF547
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1617
AccB1I GGYRCC 1 cut(s) 1636
AccII CGCG 2 cut(s) 263, 1780
AciI CCGC 2 cut(s) 1532, 1715
AclWI GGATC 2 cut(s) 786, 1025
AcsI RAATTY 6 cut(s) 92, 299, 558, 919, 1684, 1839
AcuI CTGAAG 5 cut(s) 555, 721, 999, 1113, 1556
AcvI CACGTG 1 cut(s) 905
AdeI CACNNNGTG 1 cut(s) 1586
AfaI GTAC 6 cut(s) 58, 194, 219, 538, 1164, 1520
AfiI CCNNNNNNNGG 3 cut(s) 149, 767, 930
AgsI TTSAA 9 cut(s) 129, 209, 245, 531, 699, 1297, 1381, 1683, 1739
AhlI ACTAGT 1 cut(s) 617
Alw21I GWGCWC 2 cut(s) 342, 1147
Alw26I GTCTC 3 cut(s) 489, 716, 903
AlwI GGATC 2 cut(s) 786, 1025
AlwNI CAGNNNCTG 1 cut(s) 238
AoxI GGCC 1 cut(s) 769
ApeKI GCWGC 3 cut(s) 1136, 1206, 1322
ApoI RAATTY 6 cut(s) 92, 299, 558, 919, 1684, 1839
Asp700I GAANNNNTTC 2 cut(s) 1301, 1569
AspLEI GCGC 2 cut(s) 361, 1782
AspS9I GGNCC 1 cut(s) 769
AsuHPI GGTGA 4 cut(s) 6, 145, 882, 1518
AsuII TTCGAA 2 cut(s) 165, 917
BaeGI GKGCMC 1 cut(s) 1641
BanI GGYRCC 1 cut(s) 1636
BanII GRGCYC 3 cut(s) 342, 977, 1670
BbrPI CACGTG 1 cut(s) 905
BbsI GAAGAC 2 cut(s) 624, 1388
Bbv12I GWGCWC 2 cut(s) 342, 1147
BbvI GCAGC 3 cut(s) 1123, 1193, 1334
BccI CCATC 3 cut(s) 475, 700, 799
BcgI CGANNNNNNTGC 2 cut(s) 1202, 1236
BcoDI GTCTC 3 cut(s) 489, 716, 903
BcuI ACTAGT 1 cut(s) 617
BfaI CTAG 4 cut(s) 72, 383, 618, 1284
BfuAI ACCTGC 1 cut(s) 1617
BglI GCCNNNNNGGC 1 cut(s) 498
BisI GCNGC 3 cut(s) 1137, 1207, 1323
BlsI GCNGC 3 cut(s) 1138, 1208, 1324
BmcAI AGTACT 1 cut(s) 1164
BmgT120I GGNCC 1 cut(s) 769
BmiI GGNNCC 1 cut(s) 1638
BmrI ACTGGG 1 cut(s) 469
BmsI GCATC 6 cut(s) 84, 472, 510, 747, 803, 1302
BmuI ACTGGG 1 cut(s) 469
BpiI GAAGAC 2 cut(s) 624, 1388
BpmI CTGGAG 2 cut(s) 289, 383
Bpu14I TTCGAA 2 cut(s) 165, 917
BpuEI CTTGAG 1 cut(s) 318
Bsa29I ATCGAT 1 cut(s) 950
BsaAI YACGTR 1 cut(s) 905
BsaI GGTCTC 1 cut(s) 716
BsaJI CCNNGG 2 cut(s) 765, 1662
BsaWI WCCGGW 1 cut(s) 1843
BsaXI ACNNNNNCTCC 4 cut(s) 1375, 1380, 1405, 1410
Bsc4I CCNNNNNNNGG 3 cut(s) 149, 767, 930
Bse1I ACTGG 3 cut(s) 306, 475, 1182
BseCI ATCGAT 1 cut(s) 950
BseDI CCNNGG 2 cut(s) 765, 1662
BseGI GGATG 6 cut(s) 220, 463, 762, 781, 1110, 1681
BseLI CCNNNNNNNGG 3 cut(s) 149, 767, 930
BseMII CTCAG 4 cut(s) 335, 449, 1046, 1139
BseNI ACTGG 3 cut(s) 306, 475, 1182
BseRI GAGGAG 4 cut(s) 477, 815, 1165, 1513
BseSI GKGCMC 1 cut(s) 1641
BseXI GCAGC 3 cut(s) 1123, 1193, 1334
BsgI GTGCAG 1 cut(s) 989
Bsh1236I CGCG 2 cut(s) 263, 1780
Bsh1285I CGRYCG 1 cut(s) 950
BshFI GGCC 1 cut(s) 771
BshNI GGYRCC 1 cut(s) 1636
BshVI ATCGAT 1 cut(s) 950
BsiEI CGRYCG 1 cut(s) 950
BsiHKAI GWGCWC 2 cut(s) 342, 1147
BsiSI CCGG 1 cut(s) 1844
BslFI GGGAC 2 cut(s) 1265, 1353
BslI CCNNNNNNNGG 3 cut(s) 149, 767, 930
BsmAI GTCTC 3 cut(s) 489, 716, 903
BsmFI GGGAC 2 cut(s) 1265, 1353
BsnI GGCC 1 cut(s) 771
Bso31I GGTCTC 1 cut(s) 716
Bsp119I TTCGAA 2 cut(s) 165, 917
Bsp1286I GDGCHC 5 cut(s) 342, 977, 1147, 1641, 1670
Bsp1407I TGTACA 3 cut(s) 56, 217, 536
Bsp143I GATC 5 cut(s) 516, 601, 778, 947, 1030
BspACI CCGC 2 cut(s) 1532, 1715
BspANI GGCC 1 cut(s) 771
BspCNI CTCAG 4 cut(s) 336, 450, 1047, 1140
BspDI ATCGAT 1 cut(s) 950
BspFNI CGCG 2 cut(s) 263, 1780
BspHI TCATGA 1 cut(s) 504
BspLI GGNNCC 1 cut(s) 1638
BspMI ACCTGC 1 cut(s) 1617
BspPI GGATC 2 cut(s) 786, 1025
BspT104I TTCGAA 2 cut(s) 165, 917
BspT107I GGYRCC 1 cut(s) 1636
BspTNI GGTCTC 1 cut(s) 716
BsrGI TGTACA 3 cut(s) 56, 217, 536
BsrI ACTGG 3 cut(s) 306, 475, 1182
BssECI CCNNGG 2 cut(s) 765, 1662
BssMI GATC 5 cut(s) 516, 601, 778, 947, 1030
BssT1I CCWWGG 2 cut(s) 765, 1662
Bst4CI ACNGT 8 cut(s) 373, 661, 795, 858, 1333, 1352, 1360, 1787
BstAPI GCANNNNNTGC 1 cut(s) 81
BstAUI TGTACA 3 cut(s) 56, 217, 536
BstBAI YACGTR 1 cut(s) 905
BstBI TTCGAA 2 cut(s) 165, 917
BstC8I GCNNGC 4 cut(s) 444, 499, 1221, 1260
BstDEI CTNAG 7 cut(s) 30, 41, 344, 416, 458, 1055, 1148
BstENI CCTNNNNNAGG 1 cut(s) 147
BstF5I GGATG 6 cut(s) 220, 463, 762, 781, 1110, 1681
BstFNI CGCG 2 cut(s) 263, 1780
BstHHI GCGC 2 cut(s) 361, 1782
BstKTI GATC 5 cut(s) 519, 604, 781, 950, 1033
BstMAI GTCTC 3 cut(s) 489, 716, 903
BstMBI GATC 5 cut(s) 516, 601, 778, 947, 1030
BstMCI CGRYCG 1 cut(s) 950
BstMWI GCNNNNNNNGC 7 cut(s) 81, 498, 848, 1142, 1268, 1777, 1788
BstNSI RCATGY 2 cut(s) 678, 1262
BstSLI GKGCMC 1 cut(s) 1641
BstUI CGCG 2 cut(s) 263, 1780
BstV1I GCAGC 3 cut(s) 1123, 1193, 1334
BstV2I GAAGAC 2 cut(s) 624, 1388
Bsu15I ATCGAT 1 cut(s) 950
BsuRI GGCC 1 cut(s) 771
BsuTUI ATCGAT 1 cut(s) 950
BtsCI GGATG 6 cut(s) 220, 463, 762, 781, 1110, 1681
BtsI GCAGTG 2 cut(s) 1516, 1651
BtsIMutI CAGTG 5 cut(s) 666, 1356, 1357, 1516, 1651
BveI ACCTGC 1 cut(s) 1617
Cac8I GCNNGC 4 cut(s) 444, 499, 1221, 1260
CaiI CAGNNNCTG 1 cut(s) 238
CciI TCATGA 1 cut(s) 504
CfoI GCGC 2 cut(s) 361, 1782
Cfr13I GGNCC 1 cut(s) 769
ClaI ATCGAT 1 cut(s) 950
CseI GACGC 1 cut(s) 1590
Csp6I GTAC 6 cut(s) 57, 193, 218, 537, 1163, 1519
CviQI GTAC 6 cut(s) 57, 193, 218, 537, 1163, 1519
DdeI CTNAG 7 cut(s) 30, 41, 344, 416, 458, 1055, 1148
DpnI GATC 5 cut(s) 518, 603, 780, 949, 1032
DpnII GATC 5 cut(s) 516, 601, 778, 947, 1030
DraIII CACNNNGTG 1 cut(s) 1586
Ecl136II GAGCTC 1 cut(s) 340
Eco130I CCWWGG 2 cut(s) 765, 1662
Eco24I GRGCYC 3 cut(s) 342, 977, 1670
Eco31I GGTCTC 1 cut(s) 716
Eco32I GATATC 1 cut(s) 1701
Eco53kI GAGCTC 1 cut(s) 340
Eco57I CTGAAG 5 cut(s) 555, 721, 999, 1113, 1556
Eco72I CACGTG 1 cut(s) 905
EcoICRI GAGCTC 1 cut(s) 340
EcoNI CCTNNNNNAGG 1 cut(s) 147
EcoO109I RGGNCCY 1 cut(s) 769
EcoRI GAATTC 1 cut(s) 919
EcoRV GATATC 1 cut(s) 1701
EcoT14I CCWWGG 2 cut(s) 765, 1662
EcoT22I ATGCAT 3 cut(s) 818, 1260, 1748
EcoT38I GRGCYC 3 cut(s) 342, 977, 1670
ErhI CCWWGG 2 cut(s) 765, 1662
FaqI GGGAC 2 cut(s) 1265, 1353
FauI CCCGC 1 cut(s) 1722
FauNDI CATATG 2 cut(s) 716, 1480
Fnu4HI GCNGC 3 cut(s) 1137, 1207, 1323
FokI GGATG 6 cut(s) 227, 450, 768, 769, 1117, 1688
FriOI GRGCYC 3 cut(s) 342, 977, 1670
Fsp4HI GCNGC 3 cut(s) 1137, 1207, 1323
FspBI CTAG 4 cut(s) 72, 383, 618, 1284
GlaI GCGC 2 cut(s) 360, 1781
GluI GCNGC 3 cut(s) 1137, 1207, 1323
GsuI CTGGAG 2 cut(s) 289, 383
HaeIII GGCC 1 cut(s) 771
HapII CCGG 1 cut(s) 1844
HgaI GACGC 1 cut(s) 1590
HhaI GCGC 2 cut(s) 361, 1782
Hin6I GCGC 2 cut(s) 359, 1780
HinP1I GCGC 2 cut(s) 359, 1780
HindIII AAGCTT 3 cut(s) 743, 1217, 1298
HpaII CCGG 1 cut(s) 1844
HphI GGTGA 4 cut(s) 6, 145, 882, 1518
Hpy166II GTNNAC 4 cut(s) 185, 537, 664, 908
Hpy8I GTNNAC 4 cut(s) 185, 537, 664, 908
Hpy99I CGWCG 1 cut(s) 1214
HpyAV CCTTC 6 cut(s) 143, 329, 432, 537, 738, 1439
HpyCH4III ACNGT 8 cut(s) 373, 661, 795, 858, 1333, 1352, 1360, 1787
HpyCH4IV ACGT 2 cut(s) 629, 904
HpyF10VI GCNNNNNNNGC 7 cut(s) 81, 498, 848, 1142, 1268, 1777, 1788
HpyF3I CTNAG 7 cut(s) 30, 41, 344, 416, 458, 1055, 1148
HpySE526I ACGT 2 cut(s) 629, 904
HspAI GCGC 2 cut(s) 359, 1780
Kzo9I GATC 5 cut(s) 516, 601, 778, 947, 1030
LmnI GCTCC 2 cut(s) 345, 592
Lsp1109I GCAGC 3 cut(s) 1123, 1193, 1334
LweI GCATC 6 cut(s) 84, 472, 510, 747, 803, 1302
MaeI CTAG 4 cut(s) 72, 383, 618, 1284
MaeII ACGT 2 cut(s) 629, 904
MaeIII GTNAC 7 cut(s) 8, 367, 888, 995, 1492, 1616, 1817
MalI GATC 5 cut(s) 518, 603, 780, 949, 1032
MboI GATC 5 cut(s) 516, 601, 778, 947, 1030
MboII GAAGA 8 cut(s) 257, 561, 624, 715, 858, 861, 1393, 1577
MfeI CAATTG 1 cut(s) 279
MhlI GDGCHC 5 cut(s) 342, 977, 1147, 1641, 1670
MlyI GAGTC 5 cut(s) 5, 113, 575, 659, 1287
MmeI TCCRAC 1 cut(s) 436
Mph1103I ATGCAT 3 cut(s) 818, 1260, 1748
MroXI GAANNNNTTC 2 cut(s) 1301, 1569
MseI TTAA 2 cut(s) 1233, 1505
MspA1I CMGCKG 1 cut(s) 1532
MspI CCGG 1 cut(s) 1844
MunI CAATTG 1 cut(s) 279
MvnI CGCG 2 cut(s) 263, 1780
MwoI GCNNNNNNNGC 7 cut(s) 81, 498, 848, 1142, 1268, 1777, 1788
NdeI CATATG 2 cut(s) 716, 1480
NdeII GATC 5 cut(s) 516, 601, 778, 947, 1030
NlaIV GGNNCC 1 cut(s) 1638
NmuCI GTSAC 3 cut(s) 8, 367, 888
NsiI ATGCAT 3 cut(s) 818, 1260, 1748
NspI RCATGY 2 cut(s) 678, 1262
NspV TTCGAA 2 cut(s) 165, 917
PaeI GCATGC 1 cut(s) 1262
PagI TCATGA 1 cut(s) 504
PdmI GAANNNNTTC 2 cut(s) 1301, 1569
PfeI GAWTC 7 cut(s) 47, 86, 162, 265, 845, 1679, 1805
PflFI GACNNNGTC 1 cut(s) 1764
PkrI GCNGC 3 cut(s) 1138, 1208, 1324
Ple19I CGATCG 1 cut(s) 950
PleI GAGTC 5 cut(s) 5, 113, 575, 659, 1286
PmaCI CACGTG 1 cut(s) 905
PmlI CACGTG 1 cut(s) 905
PpsI GAGTC 5 cut(s) 5, 113, 575, 659, 1286
Ppu21I YACGTR 1 cut(s) 905
Psp124BI GAGCTC 1 cut(s) 342
PspCI CACGTG 1 cut(s) 905
PspN4I GGNNCC 1 cut(s) 1638
PspPI GGNCC 1 cut(s) 769
PsrI GAACNNNNNNTAC 2 cut(s) 201, 233
PstNI CAGNNNCTG 1 cut(s) 238
PsyI GACNNNGTC 1 cut(s) 1764
PvuI CGATCG 1 cut(s) 950
RsaI GTAC 6 cut(s) 58, 194, 219, 538, 1164, 1520
RsaNI GTAC 6 cut(s) 57, 193, 218, 537, 1163, 1519
SacI GAGCTC 1 cut(s) 342
SaqAI TTAA 2 cut(s) 1233, 1505
SatI GCNGC 3 cut(s) 1137, 1207, 1323
Sau3AI GATC 5 cut(s) 516, 601, 778, 947, 1030
Sau96I GGNCC 1 cut(s) 769
ScaI AGTACT 1 cut(s) 1164
SchI GAGTC 5 cut(s) 5, 113, 575, 659, 1287
SduI GDGCHC 5 cut(s) 342, 977, 1147, 1641, 1670
SfaNI GCATC 6 cut(s) 84, 472, 510, 747, 803, 1302
SfuI TTCGAA 2 cut(s) 165, 917
SmlI CTYRAG 1 cut(s) 333
SmoI CTYRAG 1 cut(s) 333
SpeI ACTAGT 1 cut(s) 617
SphI GCATGC 1 cut(s) 1262
SsiI CCGC 2 cut(s) 1532, 1715
SspI AATATT 2 cut(s) 352, 826
SspMI CTAG 4 cut(s) 72, 383, 618, 1284
SstI GAGCTC 1 cut(s) 342
StyI CCWWGG 2 cut(s) 765, 1662
TaaI ACNGT 8 cut(s) 373, 661, 795, 858, 1333, 1352, 1360, 1787
TaiI ACGT 2 cut(s) 632, 907
TaqI TCGA 5 cut(s) 165, 917, 950, 1365, 1597
TaqII GACCGA 1 cut(s) 87
TatI WGTACW 5 cut(s) 56, 217, 536, 1162, 1518
TfiI GAWTC 7 cut(s) 47, 86, 162, 265, 845, 1679, 1805
Tru1I TTAA 2 cut(s) 1233, 1505
Tru9I TTAA 2 cut(s) 1233, 1505
TscAI CASTG 5 cut(s) 666, 1357, 1363, 1516, 1658
TseFI GTSAC 3 cut(s) 8, 367, 888
TseI GCWGC 3 cut(s) 1136, 1206, 1322
Tsp45I GTSAC 3 cut(s) 8, 367, 888
TspGWI ACGGA 1 cut(s) 1474
TspRI CASTG 5 cut(s) 666, 1357, 1363, 1516, 1658
Tth111I GACNNNGTC 1 cut(s) 1764
XagI CCTNNNNNAGG 1 cut(s) 147
XapI RAATTY 6 cut(s) 92, 299, 558, 919, 1684, 1839
XceI RCATGY 2 cut(s) 678, 1262
XcmI CCANNNNNNNNNTGG 1 cut(s) 1669
XmnI GAANNNNTTC 2 cut(s) 1301, 1569
XspI CTAG 4 cut(s) 72, 383, 618, 1284
ZrmI AGTACT 1 cut(s) 1164
Zsp2I ATGCAT 3 cut(s) 818, 1260, 1748
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.