Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0001176

Physical Location & Seq

Genomic Coordinates Forward (+)

1102600 .. 1104632

Gene Structure 2033 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G000760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGATGTGTGACTCACCGATTGTGCAAACTAAGTTGAGCCAAAGTGATTCTCTCTGTAAATATTCTCATTCTAGCATCTCATGTGATTCTGAATTTCAGTCAGAGGTTGTGAAAGATGACTCGTTGTCAAAGGTACAAAGATTGGAACAGCAGCTGCTTGAAGAAATAGAGCTACGTGCTATTCTGGAAAATGCAATTGAGAAAAATGCTGCTAAATTCTCCAGTCCAGCATGCCTTCCTTACAATGCTCAAGAGCTCCTAAGCATTATTGCTGCAGTGGAGGTGACAGTTTCCGAACTAGAACAGGAGTTGGTTGCATTGCATTTCCAACTAAGTCAAGAAAGAAATGAAAGAAGGCTGGCAGAATATCGTCTGAGGCATCCATCTCCTCGGTCAATGTCTCCTCGCCCGTCCAGCATTATGAAACTGCCGATTTCATCTTCCAGAATGTCTGCTGACCACCCGAGGTGGGTATCCAACTGGGGGATTAACAGTTGGGAAGTAAATCTGTTTTACTTGCACATGCCGTGCACGTGCAATCGTTTAGATATCTGGGAAGTCGTCCTTGGCTTGAAGACATCAGATCTGAAGTGTGGTGATTTTCTGAGCTACCAGTTGACGATCCATCTCCCATCACTTGTTTATGGTACGTTGCATTTCAAATTTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF547 Lzipper-MIP1

Protein Analysis

223

Amino Acids

25.51

Weight (kDa)

5.67

Isoelectric Point (pI)

69.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lzipper-MIP1	PF14389	40 - 114	1e-15	Leucine-zipper of ternary complex factor MIP1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001176)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13000 AT3G13000 AT3G13000
fragaria_vesca	FvH4_6g36420 FvH4_6g36420 FvH4_6g36420 FvH4_6g36420 FvH4_6g36420 FvH4_6g36420 FvH4_6g36420 FvH4_6g36420
malus_domestica	MD09G1169500.v1.1 MD17G1157700.v1.1
prunus_persica	Prupe.3G027500_v2.0.a1 Prupe.3G027500_v2.0.a1 Prupe.3G027500_v2.0.a1 Prupe.3G027500_v2.0.a1 Prupe.3G027500_v2.0.a1 Prupe.3G027500_v2.0.a1 Prupe.3G027500_v2.0.a1 Prupe.3G027500_v2.0.a1 Prupe.3G027500_v2.0.a1 Prupe.3G027500_v2.0.a1
pyrus_communis	pycom09g08690 pycom17g15090
rosa_chinensis	RchiOBHm_Chr1g0315101 RchiOBHm_Chr1g0315561 RchiOBHm_Chr1g0322971 RchiOBHm_Chr2g0090201 RchiOBHm_Chr2g0148391 RchiOBHm_Chr5g0049331
rosa_laevigata	RLG00000002464 RLG00000019778 RLG00000020347 RLG00000020398 RLG00000030746
rosa_multiflora	Rmu_co8078922.1_g000001 Rmu_sc0007047.1_g000001 Rmu_sc0009059.1_g000004
rosa_roxburghii	Rroxscaffold_2G00098770
rosa_rugosa	Rorug01G0399600 Rorug02G0406300 Rorug02G0406400 Rorug02G0406500 Rorug02G0406600 Rorug02G0406700
rosa_samantha	Rh1AG015100 Rh1AG015300 Rh2AG465400 Rh2BG478300 Rh2CG451900 Rh2DG487100 Rh4AG101900 Rh4AG113600 Rh4CG175600
rosa_wichuraiana	Rw1G000760 Rw2G037930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	616
AcsI	RAATTY	3 cut(s)	92, 215, 662
AcuI	CTGAAG	1 cut(s)	608
AcvI	CACGTG	1 cut(s)	534
AfaI	GTAC	2 cut(s)	135, 649
AfiI	CCNNNNNNNGG	2 cut(s)	469, 483
AgsI	TTSAA	3 cut(s)	161, 574, 661
AhdI	GACNNNNNGTC	1 cut(s)	124
AjuI	GAANNNNNNNTTGG	2 cut(s)	549, 581
AluBI	AGCT	4 cut(s)	154, 172, 256, 609
AluI	AGCT	4 cut(s)	154, 172, 256, 609
Alw21I	GWGCWC	2 cut(s)	258, 533
Alw26I	GTCTC	1 cut(s)	405
Alw44I	GTGCAC	1 cut(s)	529
AlwI	GGATC	1 cut(s)	616
AlwNI	CAGNNNCTG	1 cut(s)	154
Ama87I	CYCGRG	1 cut(s)	463
ApaLI	GTGCAC	1 cut(s)	529
ApeKI	GCWGC	4 cut(s)	151, 154, 209, 272
ApoI	RAATTY	3 cut(s)	92, 215, 662
AsuHPI	GGTGA	3 cut(s)	6, 295, 608
AvaI	CYCGRG	1 cut(s)	463
BaeGI	GKGCMC	1 cut(s)	533
BanII	GRGCYC	1 cut(s)	258
BbrPI	CACGTG	1 cut(s)	534
BbsI	GAAGAC	1 cut(s)	581
Bbv12I	GWGCWC	2 cut(s)	258, 533
BbvI	GCAGC	4 cut(s)	141, 163, 196, 259
BccI	CCATC	3 cut(s)	391, 633, 640
BceAI	ACGGC	1 cut(s)	511
BciVI	GTATCC	1 cut(s)	484
BcoDI	GTCTC	1 cut(s)	405
BfaI	CTAG	2 cut(s)	72, 299
BfmI	CTRYAG	1 cut(s)	273
BfuI	GTATCC	1 cut(s)	484
BglII	AGATCT	1 cut(s)	583
BisI	GCNGC	4 cut(s)	152, 155, 210, 273
BlsI	GCNGC	4 cut(s)	153, 156, 211, 274
BmeRI	GACNNNNNGTC	1 cut(s)	124
BmeT110I	CYCGRG	1 cut(s)	463
BmrI	ACTGGG	1 cut(s)	490
BmsI	GCATC	2 cut(s)	84, 388
BmuI	ACTGGG	1 cut(s)	490
BpiI	GAAGAC	1 cut(s)	581
BpmI	CTGGAG	1 cut(s)	205
Bpu10I	CCTNAGC	1 cut(s)	260
BpuEI	CTTGAG	1 cut(s)	234
BsaAI	YACGTR	2 cut(s)	176, 534
BsaJI	CCNNGG	3 cut(s)	389, 464, 565
Bsc4I	CCNNNNNNNGG	2 cut(s)	469, 483
Bse1I	ACTGG	3 cut(s)	222, 485, 613
Bse3DI	GCAATG	1 cut(s)	317
BseDI	CCNNGG	3 cut(s)	389, 464, 565
BseGI	GGATG	1 cut(s)	379
BseLI	CCNNNNNNNGG	2 cut(s)	469, 483
BseMI	GCAATG	1 cut(s)	317
BseMII	CTCAG	2 cut(s)	365, 596
BseNI	ACTGG	3 cut(s)	222, 485, 613
BseRI	GAGGAG	2 cut(s)	378, 393
BseSI	GKGCMC	1 cut(s)	533
BseXI	GCAGC	4 cut(s)	141, 163, 196, 259
BsiHKAI	GWGCWC	2 cut(s)	258, 533
BsiHKCI	CYCGRG	1 cut(s)	463
BslI	CCNNNNNNNGG	2 cut(s)	469, 483
BsmAI	GTCTC	1 cut(s)	405
BsoBI	CYCGRG	1 cut(s)	463
Bsp1286I	GDGCHC	2 cut(s)	258, 533
Bsp143I	GATC	2 cut(s)	583, 621
BspCNI	CTCAG	2 cut(s)	366, 597
BspMAI	CTGCAG	1 cut(s)	277
BspPI	GGATC	1 cut(s)	616
BsrDI	GCAATG	1 cut(s)	317
BsrI	ACTGG	3 cut(s)	222, 485, 613
BssECI	CCNNGG	3 cut(s)	389, 464, 565
BssMI	GATC	2 cut(s)	583, 621
BssT1I	CCWWGG	1 cut(s)	565
Bst4CI	ACNGT	2 cut(s)	289, 494
BstBAI	YACGTR	2 cut(s)	176, 534
BstC8I	GCNNGC	2 cut(s)	232, 360
BstDEI	CTNAG	5 cut(s)	30, 260, 332, 374, 605
BstF5I	GGATG	1 cut(s)	379
BstKTI	GATC	2 cut(s)	586, 624
BstMAI	GTCTC	1 cut(s)	405
BstMBI	GATC	2 cut(s)	583, 621
BstMWI	GCNNNNNNNGC	1 cut(s)	414
BstNSI	RCATGY	2 cut(s)	234, 526
BstSFI	CTRYAG	1 cut(s)	273
BstSLI	GKGCMC	1 cut(s)	533
BstV1I	GCAGC	4 cut(s)	141, 163, 196, 259
BstV2I	GAAGAC	1 cut(s)	581
BstX2I	RGATCY	1 cut(s)	583
BstYI	RGATCY	1 cut(s)	583
BsuI	GTATCC	1 cut(s)	484
BtsCI	GGATG	1 cut(s)	379
BtsI	GCAGTG	1 cut(s)	282
BtsIMutI	CAGTG	1 cut(s)	282
Cac8I	GCNNGC	2 cut(s)	232, 360
CaiI	CAGNNNCTG	1 cut(s)	154
Csp6I	GTAC	2 cut(s)	134, 648
CviAII	CATG	3 cut(s)	81, 231, 523
CviJI	RGCY	7 cut(s)	39, 154, 172, 256, 358, 570, 609
CviKI_1	RGCY	7 cut(s)	39, 154, 172, 256, 358, 570, 609
CviQI	GTAC	2 cut(s)	134, 648
DdeI	CTNAG	5 cut(s)	30, 260, 332, 374, 605
DpnI	GATC	2 cut(s)	585, 623
DpnII	GATC	2 cut(s)	583, 621
DriI	GACNNNNNGTC	1 cut(s)	124
Eam1105I	GACNNNNNGTC	1 cut(s)	124
Ecl136II	GAGCTC	1 cut(s)	256
Eco130I	CCWWGG	1 cut(s)	565
Eco24I	GRGCYC	1 cut(s)	258
Eco32I	GATATC	1 cut(s)	550
Eco53kI	GAGCTC	1 cut(s)	256
Eco57I	CTGAAG	1 cut(s)	608
Eco72I	CACGTG	1 cut(s)	534
Eco88I	CYCGRG	1 cut(s)	463
EcoICRI	GAGCTC	1 cut(s)	256
EcoRV	GATATC	1 cut(s)	550
EcoT14I	CCWWGG	1 cut(s)	565
EcoT38I	GRGCYC	1 cut(s)	258
ErhI	CCWWGG	1 cut(s)	565
FaeI	CATG	3 cut(s)	84, 234, 526
FaiI	YATR	5 cut(s)	82, 232, 422, 524, 645
FalI	AAGNNNNNCTT	2 cut(s)	549, 581
FatI	CATG	3 cut(s)	80, 230, 522
Fnu4HI	GCNGC	4 cut(s)	152, 155, 210, 273
FokI	GGATG	1 cut(s)	366
FriOI	GRGCYC	1 cut(s)	258
Fsp4HI	GCNGC	4 cut(s)	152, 155, 210, 273
FspBI	CTAG	2 cut(s)	72, 299
GluI	GCNGC	4 cut(s)	152, 155, 210, 273
GsuI	CTGGAG	1 cut(s)	205
Hin1II	CATG	3 cut(s)	84, 234, 526
HincII	GTYRAC	1 cut(s)	618
HindII	GTYRAC	1 cut(s)	618
HinfI	GANTC	4 cut(s)	11, 47, 86, 119
HphI	GGTGA	3 cut(s)	6, 295, 608
Hpy166II	GTNNAC	2 cut(s)	531, 618
Hpy188I	TCNGA	7 cut(s)	91, 103, 295, 375, 583, 588, 606
Hpy188III	TCNNGA	4 cut(s)	185, 251, 338, 444
Hpy8I	GTNNAC	2 cut(s)	531, 618
HpyAV	CCTTC	2 cut(s)	245, 348
HpyCH4III	ACNGT	2 cut(s)	289, 494
HpyCH4IV	ACGT	3 cut(s)	175, 533, 650
HpyCH4V	TGCA	9 cut(s)	25, 194, 275, 317, 322, 520, 531, 537, 655
HpyF10VI	GCNNNNNNNGC	1 cut(s)	414
HpyF3I	CTNAG	5 cut(s)	30, 260, 332, 374, 605
HpySE526I	ACGT	3 cut(s)	175, 533, 650
Hsp92II	CATG	3 cut(s)	84, 234, 526
Kzo9I	GATC	2 cut(s)	583, 621
LmnI	GCTCC	1 cut(s)	261
Lsp1109I	GCAGC	4 cut(s)	141, 163, 196, 259
LweI	GCATC	2 cut(s)	84, 388
MaeI	CTAG	2 cut(s)	72, 299
MaeII	ACGT	3 cut(s)	175, 533, 650
MaeIII	GTNAC	2 cut(s)	8, 283
MalI	GATC	2 cut(s)	585, 623
MboI	GATC	2 cut(s)	583, 621
MboII	GAAGA	3 cut(s)	173, 432, 586
MfeI	CAATTG	1 cut(s)	195
MflI	RGATCY	1 cut(s)	583
MhlI	GDGCHC	2 cut(s)	258, 533
MluCI	AATT	4 cut(s)	92, 195, 215, 662
MlyI	GAGTC	2 cut(s)	5, 113
MmeI	TCCRAC	2 cut(s)	352, 501
MnlI	CCTC	6 cut(s)	97, 274, 369, 399, 414, 459
MseI	TTAA	1 cut(s)	489
MspA1I	CMGCKG	1 cut(s)	154
MunI	CAATTG	1 cut(s)	195
MwoI	GCNNNNNNNGC	1 cut(s)	414
NdeII	GATC	2 cut(s)	583, 621
NlaIII	CATG	3 cut(s)	84, 234, 526
NmuCI	GTSAC	2 cut(s)	8, 283
NspI	RCATGY	2 cut(s)	234, 526
PaeI	GCATGC	1 cut(s)	234
PfeI	GAWTC	2 cut(s)	47, 86
PkrI	GCNGC	4 cut(s)	153, 156, 211, 274
PleI	GAGTC	2 cut(s)	5, 113
PmaCI	CACGTG	1 cut(s)	534
PmlI	CACGTG	1 cut(s)	534
PpsI	GAGTC	2 cut(s)	5, 113
Ppu21I	YACGTR	2 cut(s)	176, 534
Psp124BI	GAGCTC	1 cut(s)	258
PspCI	CACGTG	1 cut(s)	534
PstI	CTGCAG	1 cut(s)	277
PstNI	CAGNNNCTG	1 cut(s)	154
PsuI	RGATCY	1 cut(s)	583
PvuII	CAGCTG	1 cut(s)	154
RsaI	GTAC	2 cut(s)	135, 649
RsaNI	GTAC	2 cut(s)	134, 648
SacI	GAGCTC	1 cut(s)	258
SaqAI	TTAA	1 cut(s)	489
SatI	GCNGC	4 cut(s)	152, 155, 210, 273
Sau3AI	GATC	2 cut(s)	583, 621
SchI	GAGTC	2 cut(s)	5, 113
SduI	GDGCHC	2 cut(s)	258, 533
SfaNI	GCATC	2 cut(s)	84, 388
SfcI	CTRYAG	1 cut(s)	273
SmlI	CTYRAG	1 cut(s)	249
SmoI	CTYRAG	1 cut(s)	249
SphI	GCATGC	1 cut(s)	234
Sse9I	AATT	4 cut(s)	92, 195, 215, 662
SspI	AATATT	1 cut(s)	62
SspMI	CTAG	2 cut(s)	72, 299
SstI	GAGCTC	1 cut(s)	258
StyI	CCWWGG	1 cut(s)	565
TaaI	ACNGT	2 cut(s)	289, 494
TaiI	ACGT	3 cut(s)	178, 536, 653
TaqII	GACCGA	1 cut(s)	381
TasI	AATT	4 cut(s)	92, 195, 215, 662
TfiI	GAWTC	2 cut(s)	47, 86
Tru1I	TTAA	1 cut(s)	489
Tru9I	TTAA	1 cut(s)	489
TscAI	CASTG	1 cut(s)	282
TseFI	GTSAC	2 cut(s)	8, 283
TseI	GCWGC	4 cut(s)	151, 154, 209, 272
Tsp45I	GTSAC	2 cut(s)	8, 283
TspDTI	ATGAA	3 cut(s)	363, 426, 437
TspRI	CASTG	1 cut(s)	282
VneI	GTGCAC	1 cut(s)	529
XapI	RAATTY	3 cut(s)	92, 215, 662
XceI	RCATGY	2 cut(s)	234, 526
XspI	CTAG	2 cut(s)	72, 299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.