Rmu_co8078922.1_g000001

Protein of unknown function, DUF547

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8078922.1
OG0001176
Physical Location & Seq
Forward (+)
1 .. 564
564 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8078922.1_g000001.1.cds

Sequence Viewer

Length: 381 bp
aaaacctatgtacaggctcaagagctcctaagcaatattgctgccctggaggttacagtttcagaactagaacaggagttggttgctttgcatttccaactaagtcaagaaagaaatgaaagaaggctggcagaatatcgtctgaggcatccatctcctcagtcaatgtctcctcgcttgtgtggtattatgaaactgccgagttcatctccttcgaggtgtacagagcagtctagtcctgaaattcatcattattcaggagatgactcatggcaggagccacaagatcaatcatcagaaactagcggtgaaacatcttccatgcaatcagtaactgaggtatctattagtgtttcatgtcagatactgctttcaacttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF547 Lzipper-MIP1

Protein Analysis

126

Amino Acids

14.1

Weight (kDa)

4.87

Isoelectric Point (pI)

99.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 306
AcsI RAATTY 1 cut(s) 243
AfaI GTAC 2 cut(s) 12, 223
AgsI TTSAA 1 cut(s) 375
AjnI CCWGG 1 cut(s) 45
AluBI AGCT 1 cut(s) 25
AluI AGCT 1 cut(s) 25
Alw21I GWGCWC 1 cut(s) 27
Alw26I GTCTC 1 cut(s) 174
AlwNI CAGNNNCTG 2 cut(s) 335, 367
ApeKI GCWGC 1 cut(s) 41
ApoI RAATTY 1 cut(s) 243
AsuHPI GGTGA 1 cut(s) 320
BaeI ACNNNNGTAYC 2 cut(s) 324, 357
BanII GRGCYC 1 cut(s) 27
Bbv12I GWGCWC 1 cut(s) 27
BbvI GCAGC 1 cut(s) 28
BccI CCATC 1 cut(s) 160
BciT130I CCWGG 1 cut(s) 47
BcoDI GTCTC 1 cut(s) 174
BfaI CTAG 3 cut(s) 68, 234, 303
BisI GCNGC 1 cut(s) 42
BlsI GCNGC 1 cut(s) 43
Bme1390I CCNGG 1 cut(s) 47
BmiI GGNNCC 1 cut(s) 279
BmrFI CCNGG 1 cut(s) 47
BmsI GCATC 1 cut(s) 157
BplI GAGNNNNNCTC 2 cut(s) 193, 225
BpmI CTGGAG 1 cut(s) 68
Bpu10I CCTNAGC 1 cut(s) 29
BsaJI CCNNGG 1 cut(s) 45
BseBI CCWGG 1 cut(s) 47
BseDI CCNNGG 1 cut(s) 45
BseGI GGATG 1 cut(s) 148
BseMII CTCAG 3 cut(s) 134, 173, 327
BseRI GAGGAG 2 cut(s) 147, 162
BseXI GCAGC 1 cut(s) 28
BsiHKAI GWGCWC 1 cut(s) 27
BsmAI GTCTC 1 cut(s) 174
Bsp1286I GDGCHC 1 cut(s) 27
Bsp1407I TGTACA 2 cut(s) 10, 221
Bsp143I GATC 1 cut(s) 286
BspACI CCGC 1 cut(s) 306
BspCNI CTCAG 3 cut(s) 135, 172, 328
BspLI GGNNCC 1 cut(s) 279
BsrGI TGTACA 2 cut(s) 10, 221
BssECI CCNNGG 1 cut(s) 45
BssMI GATC 1 cut(s) 286
Bst2UI CCWGG 1 cut(s) 47
Bst4CI ACNGT 1 cut(s) 58
BstAUI TGTACA 2 cut(s) 10, 221
BstC8I GCNNGC 1 cut(s) 129
BstDEI CTNAG 5 cut(s) 29, 101, 143, 159, 336
BstF5I GGATG 1 cut(s) 148
BstKTI GATC 1 cut(s) 289
BstMAI GTCTC 1 cut(s) 174
BstMBI GATC 1 cut(s) 286
BstNI CCWGG 1 cut(s) 47
BstSCI CCNGG 1 cut(s) 45
BstV1I GCAGC 1 cut(s) 28
BtsCI GGATG 1 cut(s) 148
Cac8I GCNNGC 1 cut(s) 129
CaiI CAGNNNCTG 2 cut(s) 335, 367
Csp6I GTAC 2 cut(s) 11, 222
CviAII CATG 3 cut(s) 270, 322, 357
CviJI RGCY 4 cut(s) 17, 25, 127, 280
CviKI_1 RGCY 4 cut(s) 17, 25, 127, 280
CviQI GTAC 2 cut(s) 11, 222
DdeI CTNAG 5 cut(s) 29, 101, 143, 159, 336
DpnI GATC 1 cut(s) 288
DpnII GATC 1 cut(s) 286
Ecl136II GAGCTC 1 cut(s) 25
Eco24I GRGCYC 1 cut(s) 27
Eco53kI GAGCTC 1 cut(s) 25
EcoICRI GAGCTC 1 cut(s) 25
EcoRII CCWGG 1 cut(s) 45
EcoT38I GRGCYC 1 cut(s) 27
FaeI CATG 3 cut(s) 273, 325, 360
FaiI YATR 5 cut(s) 9, 191, 271, 323, 358
FatI CATG 3 cut(s) 269, 321, 356
Fnu4HI GCNGC 1 cut(s) 42
FokI GGATG 1 cut(s) 135
FriOI GRGCYC 1 cut(s) 27
Fsp4HI GCNGC 1 cut(s) 42
FspBI CTAG 3 cut(s) 68, 234, 303
GluI GCNGC 1 cut(s) 42
GsuI CTGGAG 1 cut(s) 68
Hin1II CATG 3 cut(s) 273, 325, 360
HinfI GANTC 1 cut(s) 266
HphI GGTGA 1 cut(s) 320
Hpy166II GTNNAC 1 cut(s) 222
Hpy188I TCNGA 4 cut(s) 64, 144, 298, 363
Hpy188III TCNNGA 4 cut(s) 20, 107, 239, 258
Hpy8I GTNNAC 1 cut(s) 222
HpyAV CCTTC 2 cut(s) 117, 222
HpyCH4III ACNGT 1 cut(s) 58
HpyCH4V TGCA 2 cut(s) 91, 325
HpyF3I CTNAG 5 cut(s) 29, 101, 143, 159, 336
Hsp92II CATG 3 cut(s) 273, 325, 360
Kzo9I GATC 1 cut(s) 286
LmnI GCTCC 2 cut(s) 30, 277
LpnPI CCDG 7 cut(s) 32, 59, 59, 113, 243, 252, 260
Lsp1109I GCAGC 1 cut(s) 28
LweI GCATC 1 cut(s) 157
MaeI CTAG 3 cut(s) 68, 234, 303
MaeIII GTNAC 2 cut(s) 52, 331
MalI GATC 1 cut(s) 288
MboI GATC 1 cut(s) 286
MboII GAAGA 1 cut(s) 309
MhlI GDGCHC 1 cut(s) 27
MluCI AATT 1 cut(s) 243
MlyI GAGTC 1 cut(s) 260
MmeI TCCRAC 1 cut(s) 121
MnlI CCTC 6 cut(s) 43, 138, 168, 183, 210, 331
MspR9I CCNGG 1 cut(s) 47
MvaI CCWGG 1 cut(s) 47
NdeII GATC 1 cut(s) 286
NlaIII CATG 3 cut(s) 273, 325, 360
NlaIV GGNNCC 1 cut(s) 279
NmeAIII GCCGAG 1 cut(s) 225
PkrI GCNGC 1 cut(s) 43
PleI GAGTC 1 cut(s) 260
PpsI GAGTC 1 cut(s) 260
Psp124BI GAGCTC 1 cut(s) 27
Psp6I CCWGG 1 cut(s) 45
PspGI CCWGG 1 cut(s) 45
PspN4I GGNNCC 1 cut(s) 279
PstNI CAGNNNCTG 2 cut(s) 335, 367
RsaI GTAC 2 cut(s) 12, 223
RsaNI GTAC 2 cut(s) 11, 222
SacI GAGCTC 1 cut(s) 27
SatI GCNGC 1 cut(s) 42
Sau3AI GATC 1 cut(s) 286
SchI GAGTC 1 cut(s) 260
ScrFI CCNGG 1 cut(s) 47
SduI GDGCHC 1 cut(s) 27
SetI ASST 5 cut(s) 8, 27, 54, 221, 342
SfaNI GCATC 1 cut(s) 157
SmlI CTYRAG 1 cut(s) 18
SmoI CTYRAG 1 cut(s) 18
Sse9I AATT 1 cut(s) 243
SsiI CCGC 1 cut(s) 306
SspI AATATT 1 cut(s) 37
SspMI CTAG 3 cut(s) 68, 234, 303
SstI GAGCTC 1 cut(s) 27
StyD4I CCNGG 1 cut(s) 45
TaaI ACNGT 1 cut(s) 58
TaqI TCGA 1 cut(s) 215
TasI AATT 1 cut(s) 243
TatI WGTACW 2 cut(s) 10, 221
TseI GCWGC 1 cut(s) 41
TspDTI ATGAA 5 cut(s) 132, 195, 206, 236, 345
XapI RAATTY 1 cut(s) 243
XspI CTAG 3 cut(s) 68, 234, 303
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.