Rorug02G0406400

Protein of unknown function, DUF547

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Reverse (-)
51865557 .. 51895321
29765 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0406400.1

Sequence Viewer

Length: 2970 bp
ATGGCAGAAGCACTCATTTCCGTGCTTCTTGAACAACTGGCTTCAGTAACTTATAAGCTAATAAAAGGGCAGGTGACATTGGTTTTGGATGTGGAGAAAGAAGTTGCAGAGTTCACCAACAATCTCAAAGCAATCCAAGCTGTACTTGAGGATGCAGAGAAGAAGCAAGTGAAGGAAGTTGTCGTGCGAGATTGGTTGGATAAGCTCAAAGATGTCTCCTACAAGATGGATAACGTGCTTGATGAGTGGAACACGGAAATTCTAAAACAGCAAGTTGAGAAACAAGAAAATGAAGGTGAAAATGCTCTTGTTAACAAGAGAAAGGTGCGTTTCTCCATTCCCTCTCCCTGTAAATGCTTTTGCTTTGGCTTTGGCCAAGTCAGTCGGGTTATTGTTCATCATGCCATTGCTCTGAAAATAAAAGAACTGAATAGTAGGCTAACTTCAATTGCTGAGGAAAGACAAAGGTACCAGTTTCAATCCACAACAACTAGTGGCATTGAGCAACCTGAACGACCAAAGAGTTCATCTTTGGTCGATCCATCTAGGATATTTGGTAGGGAAGATGAAATTTATACTTTGATAAGCATGTTATTGGGTAAGAGTAGTGGTGAAGAAAAGATGGGGCCCCTAGTCATCCCTATTATAGGGATGGGGGGCATGGGCAAGACCACTCTTGCACAACTAGCCTTCAACAATGAAGATGTTAAAGCCCATTTTGAAAAGAGAAAATGGGTTTGTGTCTCAGATCCTTTCGATGGGATCAAGATTGCTAAAGCCATCATTGATAAGAATCCAACTTCAGATGAGTTGGATGCTTTCGTGCAATCTGTGTCTACATCTGTCGAGGGAAAGAGGTTTCTGCTTGTCCTAGATGACGTGTGGACCGAAGATGATATAAAGTGGGAACCATTAAGGGTAGCTTTAATGTCTGGTGCTGAAGGCAGTAGAATATTAGTGACCACACGAAACGAAGCAGTTGCTCGTATGATGGGAGCAACCTCTCAAATGATCCATTTGGAAAAGTTGAGTGATCAACATTGCTTCTCATTATTCTATCACCTTGCATTTCTTAATAGGGAAAAAGATAAGTCTGATTCGTTTGAAGCTATTGGTAAGAAAATTGTTAAGAAGTGTAAGGGTTCGCCTCTTGCTGCAAAGACTTTAGGTAGTCTTATGTGGAATAAGAGAACAACGAAAGAATGGTGTGATGTTTTGGAGAGTGAGATATGGGATTTAGAAGTGGTTGAGAAGAAAATTTTTCAACCGTTATTACTAAGTTATTATGATTTGACATCAGAAATCAAGCGTTGTCTTCTATTCTGTGCAAGTTTTCCACAAGATTATTTGTTCTCTAAAGACACATTGATTGAGTTGTGGATGTCACAGAATTATCTCAATTCAAAAAGAAACAAGGAGAGGAGAACCGTAGGTCAAAATTATTTTGATGACTTGGTAACGAGGTCTTTCTTTCAAGACTTTGGATTAGATTATAAAGGGAACATTCAATGGTGCAAGATGCATGATATTGTGCATGAGTTTGTAAAGTTTCTTACTGGGAATGAATCTTTGATTATTGAGGCTGATGGTGCTAACCGATCAACAGAGCTCTCAATTGATAAGGTGTGTCATTTATCTCTAGGGTCAGCAAAGGGTCGAATTTCAGTTCCTATTTCATTTCACAAATGCACAAATCTGCGAACCCTCGCAACTTATAATTCAGAAATCACAACAATTGGTGGGGATTTAGTTTTCCAATTGAAATGTCTTAGGACGTTAAATTTGAGTGATAGCGAGGTCCATGAACTTCCCAAGGAGATTGGTGAACTGTTACATTTGAGGTATATTGATTTGTCTGATAATGAATTTCTAAAGGAGTTACCTGACGCCATCTGTAGTTTGTTCAATTTAGAAACCTTGCACATTGAGAACTGCGAATCACTTGAAAAACTGCCCAAGGCTATGGGCAAGTTGATCAACTTAAAGCATCTTCATGTTGCTGATTGTGAAAAGTTGAAGTACTTGCCGAAAGGGATTGGGAGAATAGGAGGTCTACGTATACTAGATACGTTCACTGTTGTCTGTGGTGGTGGTGGTGACGACGACAATGAAATACTGAAGTTGGGAGATCTGGCAATCTTTGACCAGCTTCAGGGCAAGATTGTAATTCAAGATTTGGGGAAAGTGATTGATGCTAGTGAGGCTCAGAAAGCACAATTGGAGAAGAAGAAACACCTCCTTGATTTGGTATTAGATTTTGGGATAGGAGAAGGAAGAGGCGGAGGCGGAGGCGGAGGAGGAGGAGGAGGCGGAGGAGTAGGCGGAGGAGGAGGAGGAGCAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGGTACTGAATGCGTTGCAACCACATCAAAATTTGGAATATTTGGTGATTTCTCAATATGCAGGCACCACGGTGTCTCCAAAATGGTTGATGTCTTTACACCATTTGAGATTTCTTACTCTTGAGTCGTGCGAAAATTGTGAATGTTTGCCTCCTCTCGGGAGATTGCAGTCTCTTGAAGTTCTGAATATACAAGACATGAATGTGGAAAAGGTTGGAATTGAATTCTTGGGTATAGAAGAAACTCAAACATCACCTGTTACTGCTTTCCCAAAATTGGAAAAACTCGTCTTTTCGACGGTGGGGTGGAACGAGTGGGAAGGAGTGCGAGGTTGCATGGAAGAAGATTGTCAAGTTACAATAATGCCGCATCTTTCTGACCTACACATCGAGTCAGCAAGCCTAAAACAACTGCCAGACTTCCTGCAGAATAGACCACACCTCAATTTGACGTGGGATCGCGCTATCCGGTTCCGACCTGGGCCGCTTCCGACCTTCCTCGTTAAAAGACTGAAGAAATTGTTCCGACCTGGGCGCTGTAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

989

Amino Acids

111.48

Weight (kDa)

5.11

Isoelectric Point (pI)

52.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rx_N PF18052 7 - 95 1.3e-19 Rx N-terminal domain
NB-ARC PF00931 206 - 359 4e-33 NB-ARC domain
WHD_DRP PF23559 445 - 515 7.6e-23 Disease resistance protein Winged helix domain
LRR_14 PF23598 566 - 717 8e-19 Leucine-rich repeat region
LRR_R13L1-DRL21 PF25019 709 - 754 5.4e-06 R13L1/DRL21 LRRs
LRR_R13L1-DRL21 PF25019 798 - 875 3.4e-21 R13L1/DRL21 LRRs
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 54, 1494, 1716
AarI CACCTGC 1 cut(s) 61
Acc36I ACCTGC 1 cut(s) 61
Acc65I GGTACC 1 cut(s) 468
AccB1I GGYRCC 2 cut(s) 468, 2489
AccI GTMKAC 3 cut(s) 836, 2053, 2059
AccII CGCG 1 cut(s) 2886
AciI CCGC 7 cut(s) 2280, 2286, 2292, 2310, 2322, 2792, 2909
AclWI GGATC 5 cut(s) 533, 743, 770, 1006, 2889
AcoI YGGCCR 1 cut(s) 373
AcsI RAATTY 8 cut(s) 258, 570, 1257, 1659, 1780, 1865, 2455, 2648
AcuI CTGAAG 6 cut(s) 27, 786, 960, 2135, 2138, 2957
AcyI GRCGYC 1 cut(s) 1887
AfaI GTAC 4 cut(s) 144, 470, 2021, 2430
AfiI CCNNNNNNNGG 6 cut(s) 647, 758, 2152, 2245, 2582, 2701
AflIII ACRYGT 1 cut(s) 879
AhlI ACTAGT 1 cut(s) 491
AjiI CACGTC 2 cut(s) 880, 2877
AjnI CCWGG 2 cut(s) 2902, 2953
AjuI GAANNNNNNNTTGG 2 cut(s) 2201, 2233
AleI CACNNNNGTG 1 cut(s) 2495
AluBI AGCT 7 cut(s) 58, 140, 205, 923, 1109, 1609, 2149
AluI AGCT 7 cut(s) 58, 140, 205, 923, 1109, 1609, 2149
Alw21I GWGCWC 1 cut(s) 1611
Alw26I GTCTC 4 cut(s) 220, 748, 2505, 2601
AlwI GGATC 5 cut(s) 533, 743, 770, 1006, 2889
Ama87I CYCGRG 1 cut(s) 2582
AoxI GGCC 3 cut(s) 373, 626, 2906
ApaI GGGCCC 1 cut(s) 630
ApeKI GCWGC 1 cut(s) 1154
ApoI RAATTY 8 cut(s) 258, 570, 1257, 1659, 1780, 1865, 2455, 2648
ArsI GACNNNNNNTTYG 4 cut(s) 67, 99, 1765, 1797
Asp700I GAANNNNTTC 1 cut(s) 2945
Asp718I GGTACC 1 cut(s) 468
AspLEI GCGC 2 cut(s) 2888, 2961
AspS9I GGNCC 5 cut(s) 626, 627, 885, 1798, 2906
AsuHPI GGTGA 9 cut(s) 85, 106, 308, 623, 1052, 1835, 2108, 2482, 2670
AvaI CYCGRG 1 cut(s) 2582
AvaII GGWCC 2 cut(s) 885, 1798
BaeGI GKGCMC 1 cut(s) 630
BaeI ACNNNNGTAYC 2 cut(s) 452, 485
BalI TGGCCA 1 cut(s) 375
BanI GGYRCC 2 cut(s) 468, 2489
BanII GRGCYC 2 cut(s) 630, 1611
BarI GAAGNNNNNNTAC 4 cut(s) 427, 459, 2412, 2444
BbsI GAAGAC 1 cut(s) 1307
Bbv12I GWGCWC 1 cut(s) 1611
BbvCI CCTCAGC 1 cut(s) 453
BbvI GCAGC 1 cut(s) 1141
BccI CCATC 9 cut(s) 220, 550, 616, 646, 752, 788, 985, 1580, 1898
BcgI CGANNNNNNTGC 2 cut(s) 962, 996
BciT130I CCWGG 2 cut(s) 2904, 2955
BclI TGATCA 2 cut(s) 1033, 1974
BcoDI GTCTC 4 cut(s) 220, 748, 2505, 2601
BcuI ACTAGT 1 cut(s) 491
BfaI CTAG 8 cut(s) 492, 546, 632, 686, 872, 1640, 2063, 2196
BfmI CTRYAG 3 cut(s) 1894, 2849, 2962
BfoI RGCGCY 1 cut(s) 2962
BfuAI ACCTGC 1 cut(s) 61
BglII AGATCT 1 cut(s) 2128
BisI GCNGC 3 cut(s) 1155, 2792, 2909
BlsI GCNGC 3 cut(s) 1156, 2793, 2910
BmcAI AGTACT 1 cut(s) 2021
Bme1390I CCNGG 2 cut(s) 2904, 2955
Bme18I GGWCC 2 cut(s) 885, 1798
BmeT110I CYCGRG 1 cut(s) 2582
BmgBI CACGTC 2 cut(s) 880, 2877
BmgT120I GGNCC 5 cut(s) 626, 627, 885, 1798, 2906
BmiI GGNNCC 7 cut(s) 470, 627, 628, 629, 909, 2491, 2897
BmrFI CCNGG 2 cut(s) 2904, 2955
BmrI ACTGGG 1 cut(s) 1566
BmsI GCATC 6 cut(s) 142, 805, 1509, 1996, 2182, 2803
BmuI ACTGGG 1 cut(s) 1566
BpiI GAAGAC 1 cut(s) 1307
Bpu10I CCTNAGC 1 cut(s) 453
BpuEI CTTGAG 2 cut(s) 167, 2567
BsaAI YACGTR 1 cut(s) 2057
BsaBI GATNNNNATC 1 cut(s) 792
BsaHI GRCGYC 1 cut(s) 1887
BsaJI CCNNGG 5 cut(s) 1812, 1956, 2493, 2903, 2954
BsaWI WCCGGW 1 cut(s) 2892
BsaXI ACNNNNNCTCC 2 cut(s) 2485, 2515
Bsc4I CCNNNNNNNGG 6 cut(s) 647, 758, 2152, 2245, 2582, 2701
Bse1I ACTGG 3 cut(s) 42, 472, 1561
Bse3DI GCAATG 2 cut(s) 405, 1039
Bse8I GATNNNNATC 1 cut(s) 792
BseBI CCWGG 2 cut(s) 2904, 2955
BseDI CCNNGG 5 cut(s) 1812, 1956, 2493, 2903, 2954
BseGI GGATG 6 cut(s) 94, 157, 636, 657, 820, 1386
BseJI GATNNNNATC 1 cut(s) 792
BseLI CCNNNNNNNGG 6 cut(s) 647, 758, 2152, 2245, 2582, 2701
BseMI GCAATG 2 cut(s) 405, 1039
BseMII CTCAG 3 cut(s) 444, 759, 2219
BseNI ACTGG 3 cut(s) 42, 472, 1561
BseSI GKGCMC 1 cut(s) 630
BseXI GCAGC 1 cut(s) 1141
Bsh1236I CGCG 1 cut(s) 2886
BshFI GGCC 3 cut(s) 375, 628, 2908
BshNI GGYRCC 2 cut(s) 468, 2489
BsiHKAI GWGCWC 1 cut(s) 1611
BsiHKCI CYCGRG 1 cut(s) 2582
BsiSI CCGG 1 cut(s) 2893
BslI CCNNNNNNNGG 6 cut(s) 647, 758, 2152, 2245, 2582, 2701
BsmAI GTCTC 4 cut(s) 220, 748, 2505, 2601
BsmI GAATGC 1 cut(s) 2440
BsnI GGCC 3 cut(s) 375, 628, 2908
BsoBI CYCGRG 1 cut(s) 2582
Bsp120I GGGCCC 1 cut(s) 626
Bsp1286I GDGCHC 2 cut(s) 630, 1611
Bsp143I GATC 9 cut(s) 538, 748, 762, 1011, 1033, 1598, 1974, 2128, 2881
BspACI CCGC 7 cut(s) 2280, 2286, 2292, 2310, 2322, 2792, 2909
BspANI GGCC 3 cut(s) 375, 628, 2908
BspCNI CTCAG 3 cut(s) 445, 758, 2218
BspFNI CGCG 1 cut(s) 2886
BspLI GGNNCC 7 cut(s) 470, 627, 628, 629, 909, 2491, 2897
BspMAI CTGCAG 1 cut(s) 2853
BspMI ACCTGC 1 cut(s) 61
BspPI GGATC 5 cut(s) 533, 743, 770, 1006, 2889
BspT107I GGYRCC 2 cut(s) 468, 2489
BsrDI GCAATG 2 cut(s) 405, 1039
BsrI ACTGG 3 cut(s) 42, 472, 1561
BssECI CCNNGG 5 cut(s) 1812, 1956, 2493, 2903, 2954
BssMI GATC 9 cut(s) 538, 748, 762, 1011, 1033, 1598, 1974, 2128, 2881
BssNAI GTATAC 1 cut(s) 2060
BssNI GRCGYC 1 cut(s) 1887
BssT1I CCWWGG 2 cut(s) 1812, 1956
Bst1107I GTATAC 1 cut(s) 2060
Bst2UI CCWGG 2 cut(s) 2904, 2955
Bst4CI ACNGT 6 cut(s) 1269, 1429, 1830, 2077, 2497, 2725
Bst6I CTCTTC 2 cut(s) 2269, 2418
BstACI GRCGYC 1 cut(s) 1887
BstBAI YACGTR 1 cut(s) 2057
BstC8I GCNNGC 2 cut(s) 2488, 2824
BstDEI CTNAG 5 cut(s) 453, 745, 1277, 1769, 2205
BstDSI CCRYGG 1 cut(s) 2493
BstENI CCTNNNNNAGG 1 cut(s) 645
BstF5I GGATG 6 cut(s) 94, 157, 636, 657, 820, 1386
BstFNI CGCG 1 cut(s) 2886
BstH2I RGCGCY 1 cut(s) 2962
BstHHI GCGC 2 cut(s) 2888, 2961
BstKTI GATC 9 cut(s) 541, 751, 765, 1014, 1036, 1601, 1977, 2131, 2884
BstMAI GTCTC 4 cut(s) 220, 748, 2505, 2601
BstMBI GATC 9 cut(s) 538, 748, 762, 1011, 1033, 1598, 1974, 2128, 2881
BstMWI GCNNNNNNNGC 5 cut(s) 137, 686, 1589, 2201, 2210
BstNI CCWGG 2 cut(s) 2904, 2955
BstNSI RCATGY 1 cut(s) 592
BstSCI CCNGG 2 cut(s) 2902, 2953
BstSFI CTRYAG 3 cut(s) 1894, 2849, 2962
BstSLI GKGCMC 1 cut(s) 630
BstSNI TACGTA 1 cut(s) 2057
BstUI CGCG 1 cut(s) 2886
BstV1I GCAGC 1 cut(s) 1141
BstV2I GAAGAC 1 cut(s) 1307
BstX2I RGATCY 2 cut(s) 748, 2128
BstXI CCANNNNNNTGG 1 cut(s) 1963
BstYI RGATCY 2 cut(s) 748, 2128
BstZ17I GTATAC 1 cut(s) 2060
BsuRI GGCC 3 cut(s) 375, 628, 2908
BtgI CCRYGG 1 cut(s) 2493
BtrI CACGTC 2 cut(s) 880, 2877
BtsCI GGATG 6 cut(s) 94, 157, 636, 657, 820, 1386
BtsIMutI CAGTG 1 cut(s) 2073
BveI ACCTGC 1 cut(s) 61
Cac8I GCNNGC 2 cut(s) 2488, 2824
CfoI GCGC 2 cut(s) 2888, 2961
Cfr13I GGNCC 5 cut(s) 626, 627, 885, 1798, 2906
CseI GACGC 1 cut(s) 1895
Csp6I GTAC 4 cut(s) 143, 469, 2020, 2429
CviAII CATG 9 cut(s) 401, 589, 661, 1523, 1535, 1802, 1994, 2623, 2761
CviQI GTAC 4 cut(s) 143, 469, 2020, 2429
DdeI CTNAG 5 cut(s) 453, 745, 1277, 1769, 2205
DpnI GATC 9 cut(s) 540, 750, 764, 1013, 1035, 1600, 1976, 2130, 2883
DpnII GATC 9 cut(s) 538, 748, 762, 1011, 1033, 1598, 1974, 2128, 2881
EaeI YGGCCR 1 cut(s) 373
Eam1104I CTCTTC 2 cut(s) 2269, 2418
EarI CTCTTC 2 cut(s) 2269, 2418
EciI GGCGGA 5 cut(s) 2295, 2301, 2307, 2325, 2337
Ecl136II GAGCTC 1 cut(s) 1609
Eco105I TACGTA 1 cut(s) 2057
Eco130I CCWWGG 2 cut(s) 1812, 1956
Eco24I GRGCYC 2 cut(s) 630, 1611
Eco47I GGWCC 2 cut(s) 885, 1798
Eco53kI GAGCTC 1 cut(s) 1609
Eco57I CTGAAG 6 cut(s) 27, 786, 960, 2135, 2138, 2957
Eco88I CYCGRG 1 cut(s) 2582
EcoICRI GAGCTC 1 cut(s) 1609
EcoNI CCTNNNNNAGG 1 cut(s) 645
EcoO109I RGGNCCY 2 cut(s) 626, 627
EcoRI GAATTC 1 cut(s) 2648
EcoRII CCWGG 2 cut(s) 2902, 2953
EcoT14I CCWWGG 2 cut(s) 1812, 1956
EcoT22I ATGCAT 1 cut(s) 1524
EcoT38I GRGCYC 2 cut(s) 630, 1611
ErhI CCWWGG 2 cut(s) 1812, 1956
FaeI CATG 9 cut(s) 404, 592, 664, 1526, 1538, 1805, 1997, 2626, 2764
FalI AAGNNNNNCTT 4 cut(s) 129, 161, 907, 939
FatI CATG 9 cut(s) 400, 588, 660, 1522, 1534, 1801, 1993, 2622, 2760
FbaI TGATCA 2 cut(s) 1033, 1974
FblI GTMKAC 3 cut(s) 836, 2053, 2059
Fnu4HI GCNGC 3 cut(s) 1155, 2792, 2909
FokI GGATG 6 cut(s) 101, 164, 623, 664, 827, 1393
FriOI GRGCYC 2 cut(s) 630, 1611
Fsp4HI GCNGC 3 cut(s) 1155, 2792, 2909
FspBI CTAG 8 cut(s) 492, 546, 632, 686, 872, 1640, 2063, 2196
GlaI GCGC 2 cut(s) 2887, 2960
GluI GCNGC 3 cut(s) 1155, 2792, 2909
HaeII RGCGCY 1 cut(s) 2962
HaeIII GGCC 3 cut(s) 375, 628, 2908
HapII CCGG 1 cut(s) 2893
HgaI GACGC 1 cut(s) 1895
HhaI GCGC 2 cut(s) 2888, 2961
Hin1I GRCGYC 1 cut(s) 1887
Hin1II CATG 9 cut(s) 404, 592, 664, 1526, 1538, 1805, 1997, 2626, 2764
Hin6I GCGC 2 cut(s) 2886, 2959
HinP1I GCGC 2 cut(s) 2886, 2959
HincII GTYRAC 1 cut(s) 313
HindII GTYRAC 1 cut(s) 313
HinfI GANTC 6 cut(s) 793, 1097, 1565, 1937, 2549, 2816
HpaI GTTAAC 1 cut(s) 313
HpaII CCGG 1 cut(s) 2893
HphI GGTGA 9 cut(s) 85, 106, 308, 623, 1052, 1835, 2108, 2482, 2670
Hpy166II GTNNAC 8 cut(s) 114, 313, 837, 885, 1826, 2054, 2060, 2073
Hpy188III TCNNGA 7 cut(s) 29, 766, 1475, 2171, 2546, 2584, 2600
Hpy8I GTNNAC 8 cut(s) 114, 313, 837, 885, 1826, 2054, 2060, 2073
Hpy99I CGWCG 2 cut(s) 2105, 2725
HpyAV CCTTC 7 cut(s) 166, 287, 700, 935, 2264, 2738, 2929
HpyCH4III ACNGT 6 cut(s) 1269, 1429, 1830, 2077, 2497, 2725
HpyCH4IV ACGT 6 cut(s) 234, 879, 1775, 2056, 2069, 2876
HpyF10VI GCNNNNNNNGC 5 cut(s) 137, 686, 1589, 2201, 2210
HpyF3I CTNAG 5 cut(s) 453, 745, 1277, 1769, 2205
HpySE526I ACGT 6 cut(s) 234, 879, 1775, 2056, 2069, 2876
Hsp92I GRCGYC 1 cut(s) 1887
Hsp92II CATG 9 cut(s) 404, 592, 664, 1526, 1538, 1805, 1997, 2626, 2764
HspAI GCGC 2 cut(s) 2886, 2959
KpnI GGTACC 1 cut(s) 472
Ksp22I TGATCA 2 cut(s) 1033, 1974
KspAI GTTAAC 1 cut(s) 313
Kzo9I GATC 9 cut(s) 538, 748, 762, 1011, 1033, 1598, 1974, 2128, 2881
LmnI GCTCC 2 cut(s) 995, 2336
Lsp1109I GCAGC 1 cut(s) 1141
LweI GCATC 6 cut(s) 142, 805, 1509, 1996, 2182, 2803
MaeI CTAG 8 cut(s) 492, 546, 632, 686, 872, 1640, 2063, 2196
MaeII ACGT 6 cut(s) 234, 879, 1775, 2056, 2069, 2876
MalI GATC 9 cut(s) 540, 750, 764, 1013, 1035, 1600, 1976, 2130, 2883
MboI GATC 9 cut(s) 538, 748, 762, 1011, 1033, 1598, 1974, 2128, 2881
MfeI CAATTG 5 cut(s) 447, 1614, 1734, 1757, 2216
MflI RGATCY 2 cut(s) 748, 2128
MhlI GDGCHC 2 cut(s) 630, 1611
MlsI TGGCCA 1 cut(s) 375
MluNI TGGCCA 1 cut(s) 375
MlyI GAGTC 2 cut(s) 2558, 2825
MmeI TCCRAC 6 cut(s) 177, 792, 821, 2620, 2923, 2939
Mox20I TGGCCA 1 cut(s) 375
Mph1103I ATGCAT 1 cut(s) 1524
MroXI GAANNNNTTC 1 cut(s) 2945
MscI TGGCCA 1 cut(s) 375
MseI TTAA 9 cut(s) 312, 708, 914, 926, 1074, 1128, 1778, 1982, 2928
MslI CAYNNNNRTG 4 cut(s) 20, 1992, 2495, 2627
Msp20I TGGCCA 1 cut(s) 375
MspI CCGG 1 cut(s) 2893
MspR9I CCNGG 2 cut(s) 2904, 2955
MunI CAATTG 5 cut(s) 447, 1614, 1734, 1757, 2216
Mva1269I GAATGC 1 cut(s) 2440
MvaI CCWGG 2 cut(s) 2904, 2955
MvnI CGCG 1 cut(s) 2886
MwoI GCNNNNNNNGC 5 cut(s) 137, 686, 1589, 2201, 2210
NdeII GATC 9 cut(s) 538, 748, 762, 1011, 1033, 1598, 1974, 2128, 2881
NlaIII CATG 9 cut(s) 404, 592, 664, 1526, 1538, 1805, 1997, 2626, 2764
NlaIV GGNNCC 7 cut(s) 470, 627, 628, 629, 909, 2491, 2897
NmuCI GTSAC 4 cut(s) 73, 958, 1383, 2096
NsiI ATGCAT 1 cut(s) 1524
NspI RCATGY 1 cut(s) 592
OliI CACNNNNGTG 1 cut(s) 2495
PaqCI CACCTGC 1 cut(s) 61
PcsI WCGNNNNNNNCGW 1 cut(s) 885
PctI GAATGC 1 cut(s) 2440
PdmI GAANNNNTTC 1 cut(s) 2945
PfeI GAWTC 4 cut(s) 793, 1097, 1565, 1937
PkrI GCNGC 3 cut(s) 1156, 2793, 2910
PleI GAGTC 2 cut(s) 2557, 2824
PpsI GAGTC 2 cut(s) 2557, 2824
Ppu21I YACGTR 1 cut(s) 2057
PsiI TTATAA 3 cut(s) 54, 1494, 1716
Psp124BI GAGCTC 1 cut(s) 1611
Psp6I CCWGG 2 cut(s) 2902, 2953
PspGI CCWGG 2 cut(s) 2902, 2953
PspN4I GGNNCC 7 cut(s) 470, 627, 628, 629, 909, 2491, 2897
PspOMI GGGCCC 1 cut(s) 626
PspPI GGNCC 5 cut(s) 626, 627, 885, 1798, 2906
PstI CTGCAG 1 cut(s) 2853
PsuI RGATCY 2 cut(s) 748, 2128
RsaI GTAC 4 cut(s) 144, 470, 2021, 2430
RsaNI GTAC 4 cut(s) 143, 469, 2020, 2429
RseI CAYNNNNRTG 4 cut(s) 20, 1992, 2495, 2627
SacI GAGCTC 1 cut(s) 1611
SaqAI TTAA 9 cut(s) 312, 708, 914, 926, 1074, 1128, 1778, 1982, 2928
SatI GCNGC 3 cut(s) 1155, 2792, 2909
Sau3AI GATC 9 cut(s) 538, 748, 762, 1011, 1033, 1598, 1974, 2128, 2881
Sau96I GGNCC 5 cut(s) 626, 627, 885, 1798, 2906
ScaI AGTACT 1 cut(s) 2021
SchI GAGTC 2 cut(s) 2558, 2825
ScrFI CCNGG 2 cut(s) 2904, 2955
SduI GDGCHC 2 cut(s) 630, 1611
SfaNI GCATC 6 cut(s) 142, 805, 1509, 1996, 2182, 2803
SfcI CTRYAG 3 cut(s) 1894, 2849, 2962
SinI GGWCC 2 cut(s) 885, 1798
SmiMI CAYNNNNRTG 4 cut(s) 20, 1992, 2495, 2627
SmlI CTYRAG 2 cut(s) 146, 2546
SmoI CTYRAG 2 cut(s) 146, 2546
SnaBI TACGTA 1 cut(s) 2057
SpeI ACTAGT 1 cut(s) 491
SsiI CCGC 7 cut(s) 2280, 2286, 2292, 2310, 2322, 2792, 2909
SspI AATATT 2 cut(s) 954, 2465
SspMI CTAG 8 cut(s) 492, 546, 632, 686, 872, 1640, 2063, 2196
SstI GAGCTC 1 cut(s) 1611
StyD4I CCNGG 2 cut(s) 2902, 2953
StyI CCWWGG 2 cut(s) 1812, 1956
TaaI ACNGT 6 cut(s) 1269, 1429, 1830, 2077, 2497, 2725
TaiI ACGT 6 cut(s) 237, 882, 1778, 2059, 2072, 2879
TaqI TCGA 6 cut(s) 537, 756, 846, 1657, 2720, 2814
TaqII GACCGA 1 cut(s) 902
TatI WGTACW 2 cut(s) 142, 2019
TauI GCSGC 2 cut(s) 2794, 2911
TfiI GAWTC 4 cut(s) 793, 1097, 1565, 1937
Tru1I TTAA 9 cut(s) 312, 708, 914, 926, 1074, 1128, 1778, 1982, 2928
Tru9I TTAA 9 cut(s) 312, 708, 914, 926, 1074, 1128, 1778, 1982, 2928
TscAI CASTG 1 cut(s) 2080
TseFI GTSAC 4 cut(s) 73, 958, 1383, 2096
TseI GCWGC 1 cut(s) 1154
Tsp45I GTSAC 4 cut(s) 73, 958, 1383, 2096
TspGWI ACGGA 2 cut(s) 10, 269
TspRI CASTG 1 cut(s) 2080
VpaK11BI GGWCC 2 cut(s) 885, 1798
XagI CCTNNNNNAGG 1 cut(s) 645
XapI RAATTY 8 cut(s) 258, 570, 1257, 1659, 1780, 1865, 2455, 2648
XceI RCATGY 1 cut(s) 592
XmiI GTMKAC 3 cut(s) 836, 2053, 2059
XmnI GAANNNNTTC 1 cut(s) 2945
XspI CTAG 8 cut(s) 492, 546, 632, 686, 872, 1640, 2063, 2196
ZrmI AGTACT 1 cut(s) 2021
Zsp2I ATGCAT 1 cut(s) 1524
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.