Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0001176

Physical Location & Seq

Genomic Coordinates Reverse (-)

66842822 .. 66849039

Gene Structure 6218 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030746

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGCGTTCAGTGCGAGAAGGTCACATCTTAATGCCTATTGCTATTCTGGAGGAACTAAAATCTGCACCTAGTTTTAGAGTAAAAGGAACTGGAATTGAATATCTTTCAAATTTGTTTGTTCTAGCCATGATTGCTGATTTTGTGACTGTGAATCCAGATCCGTTAATACCAACTTTGCATTATGTGCATTGTGATCATTATCTTGTATTTATCTGTCAAGCAGAAATCGAAAGAAACGACGATCCTGTTGCTTTTGGAAATGGCTCTGGATTTGCGAAAGCTTGTTTGTACCTGCGTATAGCTTCTGGTCTTCTAGTACCAGAAGCCAAGCTGTTTCTGCATTTGGAGGATTTGCTTTATGTGGTTAAAGCCAAACCCCATGATCGCAGGATGATGTGTGACTCACCGATTGTACAAACTAAGTTGAGCCAAACTGATTCTCTCTGTAAATATTCTCATTCTAGCATCTCATGTGATTCTGAATTTCAGTCAGAGGTTGTGAAAGATGACTCGTTGTCAAAGGTACAAAGATTGGAACAGCAGCTGCTTGAAGAAATAGAGCTAAGTGCTATTCTGGAAAATGCAATTGAGAAAAATTCTACTAAATTCTCCAGTCCAGCATGCCTTCCTTACAATGCTCAAGAGCTCCTAAGCATTATTGCTGCAGTGGAGGTGACAGTTTCCGAACTAGAACAGGAGTTGGTTGCATTGCATTTCCAACTAAGTCAAGAAAGAAATGAAAGAAGGCTGGCAGAATATCGTCTGAGGCATCCATCTCTTCGGTCAATGTCTCCTCGCCCGTCCAGCATTATGAAACTGCCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF547 Lzipper-MIP1

Protein Analysis

275

Amino Acids

30.91

Weight (kDa)

5.63

Isoelectric Point (pI)

68.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lzipper-MIP1	PF14389	170 - 244	8.6e-15	Leucine-zipper of ternary complex factor MIP1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001176)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13000 AT3G13000 AT3G13000
fragaria_vesca	FvH4_6g36420 FvH4_6g36420 FvH4_6g36420 FvH4_6g36420 FvH4_6g36420 FvH4_6g36420 FvH4_6g36420 FvH4_6g36420
malus_domestica	MD09G1169500.v1.1 MD17G1157700.v1.1
prunus_persica	Prupe.3G027500_v2.0.a1 Prupe.3G027500_v2.0.a1 Prupe.3G027500_v2.0.a1 Prupe.3G027500_v2.0.a1 Prupe.3G027500_v2.0.a1 Prupe.3G027500_v2.0.a1 Prupe.3G027500_v2.0.a1 Prupe.3G027500_v2.0.a1 Prupe.3G027500_v2.0.a1 Prupe.3G027500_v2.0.a1
pyrus_communis	pycom09g08690 pycom17g15090
rosa_chinensis	RchiOBHm_Chr1g0315101 RchiOBHm_Chr1g0315561 RchiOBHm_Chr1g0322971 RchiOBHm_Chr2g0090201 RchiOBHm_Chr2g0148391 RchiOBHm_Chr5g0049331
rosa_laevigata	RLG00000002464 RLG00000019778 RLG00000020347 RLG00000020398 RLG00000030746
rosa_multiflora	Rmu_co8078922.1_g000001 Rmu_sc0007047.1_g000001 Rmu_sc0009059.1_g000004
rosa_roxburghii	Rroxscaffold_2G00098770
rosa_rugosa	Rorug01G0399600 Rorug02G0406300 Rorug02G0406400 Rorug02G0406500 Rorug02G0406600 Rorug02G0406700
rosa_samantha	Rh1AG015100 Rh1AG015300 Rh2AG465400 Rh2BG478300 Rh2CG451900 Rh2DG487100 Rh4AG101900 Rh4AG113600 Rh4CG175600
rosa_wichuraiana	Rw1G000760 Rw2G037930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	300
AclWI	GGATC	2 cut(s)	152, 236
AcsI	RAATTY	4 cut(s)	109, 482, 595, 605
AfaI	GTAC	4 cut(s)	290, 318, 414, 525
AgsI	TTSAA	3 cut(s)	98, 108, 551
AhdI	GACNNNNNGTC	1 cut(s)	514
AluBI	AGCT	6 cut(s)	281, 302, 331, 544, 562, 646
AluI	AGCT	6 cut(s)	281, 302, 331, 544, 562, 646
Alw21I	GWGCWC	1 cut(s)	648
Alw26I	GTCTC	1 cut(s)	795
AlwI	GGATC	2 cut(s)	152, 236
AlwNI	CAGNNNCTG	1 cut(s)	544
ApeKI	GCWGC	3 cut(s)	541, 544, 662
ApoI	RAATTY	4 cut(s)	109, 482, 595, 605
AsuHPI	GGTGA	2 cut(s)	396, 685
BanII	GRGCYC	1 cut(s)	648
BbsI	GAAGAC	1 cut(s)	302
Bbv12I	GWGCWC	1 cut(s)	648
BbvI	GCAGC	3 cut(s)	531, 553, 649
BccI	CCATC	1 cut(s)	781
BceAI	ACGGC	1 cut(s)	805
BcgI	CGANNNNNNTGC	2 cut(s)	230, 264
BclI	TGATCA	1 cut(s)	193
BcoDI	GTCTC	1 cut(s)	795
BfaI	CTAG	5 cut(s)	69, 122, 314, 462, 689
BfmI	CTRYAG	1 cut(s)	663
BfuAI	ACCTGC	1 cut(s)	300
BisI	GCNGC	3 cut(s)	542, 545, 663
BlsI	GCNGC	3 cut(s)	543, 546, 664
BmeRI	GACNNNNNGTC	1 cut(s)	514
BmsI	GCATC	2 cut(s)	474, 778
BpiI	GAAGAC	1 cut(s)	302
BpmI	CTGGAG	2 cut(s)	68, 595
Bpu10I	CCTNAGC	1 cut(s)	650
BpuEI	CTTGAG	1 cut(s)	624
BsaBI	GATNNNNATC	1 cut(s)	198
Bse1I	ACTGG	2 cut(s)	94, 612
Bse3DI	GCAATG	1 cut(s)	707
Bse8I	GATNNNNATC	1 cut(s)	198
BseGI	GGATG	2 cut(s)	396, 769
BseJI	GATNNNNATC	1 cut(s)	198
BseMI	GCAATG	1 cut(s)	707
BseMII	CTCAG	1 cut(s)	755
BseNI	ACTGG	2 cut(s)	94, 612
BseRI	GAGGAG	1 cut(s)	783
BseXI	GCAGC	3 cut(s)	531, 553, 649
BsgI	GTGCAG	1 cut(s)	48
BsiHKAI	GWGCWC	1 cut(s)	648
BsmAI	GTCTC	1 cut(s)	795
Bsp1286I	GDGCHC	1 cut(s)	648
Bsp1407I	TGTACA	1 cut(s)	412
Bsp143I	GATC	4 cut(s)	157, 193, 241, 382
BspCNI	CTCAG	1 cut(s)	756
BspMAI	CTGCAG	1 cut(s)	667
BspMI	ACCTGC	1 cut(s)	300
BspPI	GGATC	2 cut(s)	152, 236
BsrDI	GCAATG	1 cut(s)	707
BsrGI	TGTACA	1 cut(s)	412
BsrI	ACTGG	2 cut(s)	94, 612
BssMI	GATC	4 cut(s)	157, 193, 241, 382
Bst4CI	ACNGT	2 cut(s)	148, 679
Bst6I	CTCTTC	1 cut(s)	783
BstAPI	GCANNNNNTGC	1 cut(s)	184
BstAUI	TGTACA	1 cut(s)	412
BstC8I	GCNNGC	2 cut(s)	622, 750
BstDEI	CTNAG	5 cut(s)	420, 563, 650, 722, 764
BstF5I	GGATG	2 cut(s)	396, 769
BstKTI	GATC	4 cut(s)	160, 196, 244, 385
BstMAI	GTCTC	1 cut(s)	795
BstMBI	GATC	4 cut(s)	157, 193, 241, 382
BstMWI	GCNNNNNNNGC	5 cut(s)	10, 131, 184, 337, 804
BstNSI	RCATGY	1 cut(s)	624
BstSFI	CTRYAG	1 cut(s)	663
BstV1I	GCAGC	3 cut(s)	531, 553, 649
BstV2I	GAAGAC	1 cut(s)	302
BstX2I	RGATCY	1 cut(s)	157
BstYI	RGATCY	1 cut(s)	157
BtsCI	GGATG	2 cut(s)	396, 769
BtsI	GCAGTG	1 cut(s)	672
BtsIMutI	CAGTG	2 cut(s)	15, 672
BveI	ACCTGC	1 cut(s)	300
Cac8I	GCNNGC	2 cut(s)	622, 750
CaiI	CAGNNNCTG	1 cut(s)	544
Csp6I	GTAC	4 cut(s)	289, 317, 413, 524
CviAII	CATG	4 cut(s)	127, 380, 471, 621
CviQI	GTAC	4 cut(s)	289, 317, 413, 524
DdeI	CTNAG	5 cut(s)	420, 563, 650, 722, 764
DpnI	GATC	4 cut(s)	159, 195, 243, 384
DpnII	GATC	4 cut(s)	157, 193, 241, 382
DriI	GACNNNNNGTC	1 cut(s)	514
Eam1104I	CTCTTC	1 cut(s)	783
Eam1105I	GACNNNNNGTC	1 cut(s)	514
EarI	CTCTTC	1 cut(s)	783
Ecl136II	GAGCTC	1 cut(s)	646
Eco24I	GRGCYC	1 cut(s)	648
Eco53kI	GAGCTC	1 cut(s)	646
EcoICRI	GAGCTC	1 cut(s)	646
EcoT38I	GRGCYC	1 cut(s)	648
FaeI	CATG	4 cut(s)	130, 383, 474, 624
FaiI	YATR	8 cut(s)	128, 183, 299, 360, 381, 472, 622, 812
FatI	CATG	4 cut(s)	126, 379, 470, 620
FbaI	TGATCA	1 cut(s)	193
Fnu4HI	GCNGC	3 cut(s)	542, 545, 663
FokI	GGATG	2 cut(s)	403, 756
FriOI	GRGCYC	1 cut(s)	648
Fsp4HI	GCNGC	3 cut(s)	542, 545, 663
FspBI	CTAG	5 cut(s)	69, 122, 314, 462, 689
GluI	GCNGC	3 cut(s)	542, 545, 663
GsuI	CTGGAG	2 cut(s)	68, 595
Hin1II	CATG	4 cut(s)	130, 383, 474, 624
HindIII	AAGCTT	1 cut(s)	279
HinfI	GANTC	5 cut(s)	151, 401, 437, 476, 509
HphI	GGTGA	2 cut(s)	396, 685
Hpy188I	TCNGA	4 cut(s)	481, 493, 685, 765
Hpy188III	TCNNGA	6 cut(s)	47, 155, 267, 575, 641, 728
Hpy99I	CGWCG	1 cut(s)	242
HpyAV	CCTTC	3 cut(s)	11, 635, 738
HpyCH4III	ACNGT	2 cut(s)	148, 679
HpyCH4V	TGCA	8 cut(s)	65, 178, 187, 340, 584, 665, 707, 712
HpyF10VI	GCNNNNNNNGC	5 cut(s)	10, 131, 184, 337, 804
HpyF3I	CTNAG	5 cut(s)	420, 563, 650, 722, 764
Hsp92II	CATG	4 cut(s)	130, 383, 474, 624
Ksp22I	TGATCA	1 cut(s)	193
Kzo9I	GATC	4 cut(s)	157, 193, 241, 382
LmnI	GCTCC	1 cut(s)	651
Lsp1109I	GCAGC	3 cut(s)	531, 553, 649
LweI	GCATC	2 cut(s)	474, 778
MaeI	CTAG	5 cut(s)	69, 122, 314, 462, 689
MaeIII	GTNAC	4 cut(s)	20, 142, 398, 673
MalI	GATC	4 cut(s)	159, 195, 243, 384
MboI	GATC	4 cut(s)	157, 193, 241, 382
MboII	GAAGA	3 cut(s)	302, 563, 770
MfeI	CAATTG	1 cut(s)	585
MflI	RGATCY	1 cut(s)	157
MhlI	GDGCHC	1 cut(s)	648
MluCI	AATT	6 cut(s)	93, 109, 482, 585, 595, 605
MlyI	GAGTC	2 cut(s)	395, 503
MmeI	TCCRAC	1 cut(s)	742
MnlI	CCTC	6 cut(s)	43, 340, 487, 664, 759, 804
MseI	TTAA	3 cut(s)	29, 164, 366
MslI	CAYNNNNRTG	1 cut(s)	29
MspA1I	CMGCKG	1 cut(s)	544
MunI	CAATTG	1 cut(s)	585
MwoI	GCNNNNNNNGC	5 cut(s)	10, 131, 184, 337, 804
NdeII	GATC	4 cut(s)	157, 193, 241, 382
NlaIII	CATG	4 cut(s)	130, 383, 474, 624
NmuCI	GTSAC	4 cut(s)	20, 142, 398, 673
NspI	RCATGY	1 cut(s)	624
PaeI	GCATGC	1 cut(s)	624
PcsI	WCGNNNNNNNCGW	1 cut(s)	234
PfeI	GAWTC	3 cut(s)	151, 437, 476
PkrI	GCNGC	3 cut(s)	543, 546, 664
PleI	GAGTC	2 cut(s)	395, 503
PpsI	GAGTC	2 cut(s)	395, 503
Psp124BI	GAGCTC	1 cut(s)	648
PstI	CTGCAG	1 cut(s)	667
PstNI	CAGNNNCTG	1 cut(s)	544
PsuI	RGATCY	1 cut(s)	157
PvuII	CAGCTG	1 cut(s)	544
RsaI	GTAC	4 cut(s)	290, 318, 414, 525
RsaNI	GTAC	4 cut(s)	289, 317, 413, 524
RseI	CAYNNNNRTG	1 cut(s)	29
SacI	GAGCTC	1 cut(s)	648
SaqAI	TTAA	3 cut(s)	29, 164, 366
SatI	GCNGC	3 cut(s)	542, 545, 663
Sau3AI	GATC	4 cut(s)	157, 193, 241, 382
SchI	GAGTC	2 cut(s)	395, 503
SduI	GDGCHC	1 cut(s)	648
SfaNI	GCATC	2 cut(s)	474, 778
SfcI	CTRYAG	1 cut(s)	663
SmiMI	CAYNNNNRTG	1 cut(s)	29
SmlI	CTYRAG	1 cut(s)	639
SmoI	CTYRAG	1 cut(s)	639
SphI	GCATGC	1 cut(s)	624
Sse9I	AATT	6 cut(s)	93, 109, 482, 585, 595, 605
SspI	AATATT	1 cut(s)	452
SspMI	CTAG	5 cut(s)	69, 122, 314, 462, 689
SstI	GAGCTC	1 cut(s)	648
TaaI	ACNGT	2 cut(s)	148, 679
TaqI	TCGA	1 cut(s)	228
TaqII	GACCGA	1 cut(s)	771
TasI	AATT	6 cut(s)	93, 109, 482, 585, 595, 605
TatI	WGTACW	1 cut(s)	412
TfiI	GAWTC	3 cut(s)	151, 437, 476
Tru1I	TTAA	3 cut(s)	29, 164, 366
Tru9I	TTAA	3 cut(s)	29, 164, 366
TscAI	CASTG	2 cut(s)	15, 672
TseFI	GTSAC	4 cut(s)	20, 142, 398, 673
TseI	GCWGC	3 cut(s)	541, 544, 662
Tsp45I	GTSAC	4 cut(s)	20, 142, 398, 673
TspDTI	ATGAA	1 cut(s)	753
TspGWI	ACGGA	1 cut(s)	150
TspRI	CASTG	2 cut(s)	15, 672
XapI	RAATTY	4 cut(s)	109, 482, 595, 605
XceI	RCATGY	1 cut(s)	624
XspI	CTAG	5 cut(s)	69, 122, 314, 462, 689

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.