RLG00000002464

Protein of unknown function, DUF547

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0001176
Physical Location & Seq
Forward (+)
34545433 .. 34547398
1966 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002464

Sequence Viewer

Length: 582 bp
ATGGTGTCTTACTGGCACCCCTATACAGGATTTGTGAAAGCTTGTTTGTACTTGCGTATAGCTTCCAGTCTTCTGGTACCAGAAGCCAAGCTGTTTCTGCATTTGGAGGATTTGCTTTATGTGGTAAAAGCCAAACCCCATGATCACAGGATGATAAGTGATTCTCTCTGTAAATATTCTCATTCTAGCATCTCATGTGATTCCAAATTTCAGTCGGAGGTTGTGAAAAATGACTCGTTGTCAAAGGAATTTGCATTCCAAATCCACTCGGAATTTGTAGAGCTGAAATCTTTGGAATTTGAGGAAGGATTTGTTTGGAATTTGAGGAAGGATTTGTCTGCAATGAACCAAAACTATTGTAGACCAACAGATGCCGGGCTTTTAAGGGAGAAGGAGAAAGGCATGTGCATCGAGGAGGAGATAAGGTTGAATATAAGGGTCCAGTTTGAAGAAACCATCTACACACAGAGACTTGTTGAGATCTATAAGGATAACAATAATGCGAGCAAGGACGAGTTTGTGGCTCTGCTCTCGGAGGTCAAGCTGCCACCTCCACCAATATATGTTCACTGCATAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF547 Lzipper-MIP1

Protein Analysis

194

Amino Acids

22.5

Weight (kDa)

5.68

Isoelectric Point (pI)

46.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 76
AccB1I GGYRCC 2 cut(s) 15, 76
AccI GTMKAC 1 cut(s) 361
AcsI RAATTY 5 cut(s) 206, 248, 272, 296, 319
AfaI GTAC 2 cut(s) 50, 78
AfiI CCNNNNNNNGG 1 cut(s) 26
AgsI TTSAA 2 cut(s) 430, 449
AhdI GACNNNNNGTC 1 cut(s) 238
AluBI AGCT 5 cut(s) 41, 62, 91, 283, 544
AluI AGCT 5 cut(s) 41, 62, 91, 283, 544
Alw26I GTCTC 1 cut(s) 463
ApeKI GCWGC 1 cut(s) 544
ApoI RAATTY 5 cut(s) 206, 248, 272, 296, 319
Asp718I GGTACC 1 cut(s) 76
AspS9I GGNCC 1 cut(s) 439
AsuC2I CCSGG 1 cut(s) 376
AvaII GGWCC 1 cut(s) 439
BanI GGYRCC 2 cut(s) 15, 76
BbsI GAAGAC 1 cut(s) 62
BbvI GCAGC 1 cut(s) 531
BccI CCATC 1 cut(s) 464
BcgI CGANNNNNNTGC 2 cut(s) 391, 425
BclI TGATCA 1 cut(s) 142
BcnI CCSGG 1 cut(s) 376
BcoDI GTCTC 1 cut(s) 463
BfaI CTAG 1 cut(s) 186
BglII AGATCT 1 cut(s) 480
BisI GCNGC 1 cut(s) 545
BlsI GCNGC 1 cut(s) 546
Bme1390I CCNGG 1 cut(s) 376
Bme18I GGWCC 1 cut(s) 439
BmeRI GACNNNNNGTC 1 cut(s) 238
BmgT120I GGNCC 1 cut(s) 439
BmiI GGNNCC 3 cut(s) 17, 78, 440
BmrFI CCNGG 1 cut(s) 376
BmsI GCATC 3 cut(s) 198, 361, 417
BpiI GAAGAC 1 cut(s) 62
BpuMI CCSGG 1 cut(s) 376
BsaXI ACNNNNNCTCC 2 cut(s) 410, 440
Bsc4I CCNNNNNNNGG 1 cut(s) 26
Bse1I ACTGG 3 cut(s) 17, 66, 442
Bse3DI GCAATG 1 cut(s) 348
BseGI GGATG 1 cut(s) 156
BseLI CCNNNNNNNGG 1 cut(s) 26
BseMI GCAATG 1 cut(s) 348
BseNI ACTGG 3 cut(s) 17, 66, 442
BseRI GAGGAG 2 cut(s) 428, 431
BseXI GCAGC 1 cut(s) 531
BshNI GGYRCC 2 cut(s) 15, 76
BsiSI CCGG 1 cut(s) 375
BslI CCNNNNNNNGG 1 cut(s) 26
BsmAI GTCTC 1 cut(s) 463
BsmI GAATGC 1 cut(s) 254
Bsp143I GATC 2 cut(s) 142, 480
BspLI GGNNCC 3 cut(s) 17, 78, 440
BspT107I GGYRCC 2 cut(s) 15, 76
BsrDI GCAATG 1 cut(s) 348
BsrI ACTGG 3 cut(s) 17, 66, 442
BssMI GATC 2 cut(s) 142, 480
BstC8I GCNNGC 1 cut(s) 505
BstF5I GGATG 1 cut(s) 156
BstKTI GATC 2 cut(s) 145, 483
BstMAI GTCTC 1 cut(s) 463
BstMBI GATC 2 cut(s) 142, 480
BstMWI GCNNNNNNNGC 1 cut(s) 97
BstNSI RCATGY 1 cut(s) 406
BstSCI CCNGG 1 cut(s) 374
BstV1I GCAGC 1 cut(s) 531
BstV2I GAAGAC 1 cut(s) 62
BstX2I RGATCY 1 cut(s) 480
BstXI CCANNNNNNTGG 1 cut(s) 73
BstYI RGATCY 1 cut(s) 480
BtsCI GGATG 1 cut(s) 156
BtsI GCAGTG 1 cut(s) 568
BtsIMutI CAGTG 1 cut(s) 568
Cac8I GCNNGC 1 cut(s) 505
Cfr13I GGNCC 1 cut(s) 439
Csp6I GTAC 2 cut(s) 49, 77
CviAII CATG 3 cut(s) 140, 195, 403
CviJI RGCY 9 cut(s) 41, 62, 86, 91, 131, 283, 379, 524, 544
CviKI_1 RGCY 9 cut(s) 41, 62, 86, 91, 131, 283, 379, 524, 544
CviQI GTAC 2 cut(s) 49, 77
DpnI GATC 2 cut(s) 144, 482
DpnII GATC 2 cut(s) 142, 480
DriI GACNNNNNGTC 1 cut(s) 238
Eam1105I GACNNNNNGTC 1 cut(s) 238
Eco47I GGWCC 1 cut(s) 439
FaeI CATG 3 cut(s) 143, 198, 406
FatI CATG 3 cut(s) 139, 194, 402
FbaI TGATCA 1 cut(s) 142
FblI GTMKAC 1 cut(s) 361
Fnu4HI GCNGC 1 cut(s) 545
FokI GGATG 1 cut(s) 163
Fsp4HI GCNGC 1 cut(s) 545
FspBI CTAG 1 cut(s) 186
GluI GCNGC 1 cut(s) 545
HapII CCGG 1 cut(s) 375
Hin1II CATG 3 cut(s) 143, 198, 406
HindIII AAGCTT 1 cut(s) 39
HinfI GANTC 3 cut(s) 161, 200, 233
HpaII CCGG 1 cut(s) 375
Hpy166II GTNNAC 2 cut(s) 362, 568
Hpy188I TCNGA 3 cut(s) 217, 271, 535
Hpy8I GTNNAC 2 cut(s) 362, 568
HpyAV CCTTC 3 cut(s) 299, 322, 385
HpyCH4V TGCA 5 cut(s) 100, 254, 341, 408, 573
HpyF10VI GCNNNNNNNGC 1 cut(s) 97
Hsp92II CATG 3 cut(s) 143, 198, 406
KpnI GGTACC 1 cut(s) 80
Ksp22I TGATCA 1 cut(s) 142
Kzo9I GATC 2 cut(s) 142, 480
LpnPI CCDG 7 cut(s) 12, 59, 79, 93, 133, 388, 455
Lsp1109I GCAGC 1 cut(s) 531
LweI GCATC 3 cut(s) 198, 361, 417
MaeI CTAG 1 cut(s) 186
MalI GATC 2 cut(s) 144, 482
MboI GATC 2 cut(s) 142, 480
MboII GAAGA 2 cut(s) 62, 461
MflI RGATCY 1 cut(s) 480
MluCI AATT 5 cut(s) 206, 248, 272, 296, 319
MlyI GAGTC 1 cut(s) 227
MmeI TCCRAC 1 cut(s) 195
MnlI CCTC 8 cut(s) 100, 211, 295, 318, 406, 409, 529, 561
MseI TTAA 1 cut(s) 383
MspI CCGG 1 cut(s) 375
MspR9I CCNGG 1 cut(s) 376
Mva1269I GAATGC 1 cut(s) 254
MwoI GCNNNNNNNGC 1 cut(s) 97
NciI CCSGG 1 cut(s) 376
NdeII GATC 2 cut(s) 142, 480
NlaIII CATG 3 cut(s) 143, 198, 406
NlaIV GGNNCC 3 cut(s) 17, 78, 440
NspI RCATGY 1 cut(s) 406
PctI GAATGC 1 cut(s) 254
PfeI GAWTC 2 cut(s) 161, 200
PkrI GCNGC 1 cut(s) 546
PleI GAGTC 1 cut(s) 227
PpsI GAGTC 1 cut(s) 227
PspN4I GGNNCC 3 cut(s) 17, 78, 440
PspPI GGNCC 1 cut(s) 439
PsuI RGATCY 1 cut(s) 480
RsaI GTAC 2 cut(s) 50, 78
RsaNI GTAC 2 cut(s) 49, 77
SaqAI TTAA 1 cut(s) 383
SatI GCNGC 1 cut(s) 545
Sau3AI GATC 2 cut(s) 142, 480
Sau96I GGNCC 1 cut(s) 439
SchI GAGTC 1 cut(s) 227
ScrFI CCNGG 1 cut(s) 376
SetI ASST 9 cut(s) 43, 64, 93, 222, 285, 428, 540, 546, 553
SfaNI GCATC 3 cut(s) 198, 361, 417
SinI GGWCC 1 cut(s) 439
Sse9I AATT 5 cut(s) 206, 248, 272, 296, 319
SspI AATATT 1 cut(s) 176
SspMI CTAG 1 cut(s) 186
StyD4I CCNGG 1 cut(s) 374
TaqI TCGA 1 cut(s) 411
TasI AATT 5 cut(s) 206, 248, 272, 296, 319
TatI WGTACW 1 cut(s) 48
TfiI GAWTC 2 cut(s) 161, 200
Tru1I TTAA 1 cut(s) 383
Tru9I TTAA 1 cut(s) 383
TscAI CASTG 1 cut(s) 575
TseI GCWGC 1 cut(s) 544
TspDTI ATGAA 1 cut(s) 359
TspRI CASTG 1 cut(s) 575
VpaK11BI GGWCC 1 cut(s) 439
XapI RAATTY 5 cut(s) 206, 248, 272, 296, 319
XceI RCATGY 1 cut(s) 406
XmiI GTMKAC 1 cut(s) 361
XspI CTAG 1 cut(s) 186
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.