Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0001176

Physical Location & Seq

Genomic Coordinates Reverse (-)

38170239 .. 38171311

Gene Structure 1073 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG175600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGAGCTTGATCAATGGTTTTGTAATTGCTGAATGGGCCTCGTATGCTTCAGGATCGGATTTTGATTATTTATGTTCTCGGGGTTTGATTCTGGATTGCTTATTCAATTCGTTGCTCTATGCATCAGAATGTCATGTGCACTCTGATAGGAAAAGAGCTACTTTGATCTTCCTTAGCTCAAAGCCATGTTGTGATCACTACTACATGTGGAGTTTTAGCATCAGAATTTTCTATAGAGTTAGTTGGTTCTTGTTGAGGCGCGCGCATACCATAAAATCCTCTAAAAGCCAACTCTCTATTGCTGCTGCTGCTTTAGTTGCTGGTCACCGATGGTGTCTTACTGGCACCCCTATACAGAACAATCTGGAGGACATTTATAGTCTACTCCAGTTTTTGAGGGTAGAACCTTGGCCCTTGGGCGAATTGCGCTTGGTGGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009292 GO:0009294 GO:0009987 GO:0033554 GO:0034641 GO:0043170 GO:0044237 GO:0044238 GO:0044260 GO:0044764 GO:0045003 GO:0046483 GO:0050896 GO:0051704 GO:0051716 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HIRAN Helicase_C SNF2_N zf-C3HC4_2 zf-C3HC4_3

Protein Analysis

146

Amino Acids

16.8

Weight (kDa)

8.24

Isoelectric Point (pI)

51.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SNF2-rel_dom	PF00176	84 - 137	2.3e-16	SNF2-related domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001176)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13000 AT3G13000 AT3G13000
fragaria_vesca	FvH4_6g36420 FvH4_6g36420 FvH4_6g36420 FvH4_6g36420 FvH4_6g36420 FvH4_6g36420 FvH4_6g36420 FvH4_6g36420
malus_domestica	MD09G1169500.v1.1 MD17G1157700.v1.1
prunus_persica	Prupe.3G027500_v2.0.a1 Prupe.3G027500_v2.0.a1 Prupe.3G027500_v2.0.a1 Prupe.3G027500_v2.0.a1 Prupe.3G027500_v2.0.a1 Prupe.3G027500_v2.0.a1 Prupe.3G027500_v2.0.a1 Prupe.3G027500_v2.0.a1 Prupe.3G027500_v2.0.a1 Prupe.3G027500_v2.0.a1
pyrus_communis	pycom09g08690 pycom17g15090
rosa_chinensis	RchiOBHm_Chr1g0315101 RchiOBHm_Chr1g0315561 RchiOBHm_Chr1g0322971 RchiOBHm_Chr2g0090201 RchiOBHm_Chr2g0148391 RchiOBHm_Chr5g0049331
rosa_laevigata	RLG00000002464 RLG00000019778 RLG00000020347 RLG00000020398 RLG00000030746
rosa_multiflora	Rmu_co8078922.1_g000001 Rmu_sc0007047.1_g000001 Rmu_sc0009059.1_g000004
rosa_roxburghii	Rroxscaffold_2G00098770
rosa_rugosa	Rorug01G0399600 Rorug02G0406300 Rorug02G0406400 Rorug02G0406500 Rorug02G0406600 Rorug02G0406700
rosa_samantha	Rh1AG015100 Rh1AG015300 Rh2AG465400 Rh2BG478300 Rh2CG451900 Rh2DG487100 Rh4AG101900 Rh4AG113600 Rh4CG175600
rosa_wichuraiana	Rw1G000760 Rw2G037930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	344
AccI	GTMKAC	1 cut(s)	382
AccII	CGCG	2 cut(s)	261, 263
AclWI	GGATC	1 cut(s)	61
AcsI	RAATTY	1 cut(s)	225
AcuI	CTGAAG	1 cut(s)	33
AflIII	ACRYGT	1 cut(s)	204
AgsI	TTSAA	1 cut(s)	106
AluBI	AGCT	3 cut(s)	6, 158, 177
AluI	AGCT	3 cut(s)	6, 158, 177
Alw21I	GWGCWC	1 cut(s)	141
Alw44I	GTGCAC	1 cut(s)	137
AlwI	GGATC	1 cut(s)	61
Ama87I	CYCGRG	1 cut(s)	78
AoxI	GGCC	2 cut(s)	36, 410
ApaLI	GTGCAC	1 cut(s)	137
ApeKI	GCWGC	3 cut(s)	302, 305, 308
ApoI	RAATTY	1 cut(s)	225
AspLEI	GCGC	4 cut(s)	261, 263, 265, 429
AspS9I	GGNCC	2 cut(s)	36, 411
AsuHPI	GGTGA	1 cut(s)	317
AvaI	CYCGRG	1 cut(s)	78
BaeGI	GKGCMC	1 cut(s)	141
BanI	GGYRCC	1 cut(s)	344
Bbv12I	GWGCWC	1 cut(s)	141
BbvI	GCAGC	3 cut(s)	289, 292, 295
BccI	CCATC	1 cut(s)	324
BclI	TGATCA	2 cut(s)	9, 193
BfmI	CTRYAG	1 cut(s)	232
BisI	GCNGC	3 cut(s)	303, 306, 309
BlsI	GCNGC	3 cut(s)	304, 307, 310
BmeT110I	CYCGRG	1 cut(s)	78
BmgT120I	GGNCC	2 cut(s)	36, 411
BmiI	GGNNCC	1 cut(s)	346
BmsI	GCATC	2 cut(s)	131, 228
BpmI	CTGGAG	2 cut(s)	371, 386
Bpu10I	CCTNAGC	1 cut(s)	173
BsaJI	CCNNGG	2 cut(s)	407, 414
Bse1I	ACTGG	2 cut(s)	346, 388
BseDI	CCNNGG	2 cut(s)	407, 414
BseNI	ACTGG	2 cut(s)	346, 388
BsePI	GCGCGC	2 cut(s)	259, 261
BseSI	GKGCMC	1 cut(s)	141
BseXI	GCAGC	3 cut(s)	289, 292, 295
Bsh1236I	CGCG	2 cut(s)	261, 263
BshFI	GGCC	2 cut(s)	38, 412
BshNI	GGYRCC	1 cut(s)	344
BsiHKAI	GWGCWC	1 cut(s)	141
BsiHKCI	CYCGRG	1 cut(s)	78
BsnI	GGCC	2 cut(s)	38, 412
BsoBI	CYCGRG	1 cut(s)	78
Bsp1286I	GDGCHC	1 cut(s)	141
Bsp143I	GATC	4 cut(s)	9, 53, 165, 193
BspANI	GGCC	2 cut(s)	38, 412
BspFNI	CGCG	2 cut(s)	261, 263
BspLI	GGNNCC	1 cut(s)	346
BspPI	GGATC	1 cut(s)	61
BspT107I	GGYRCC	1 cut(s)	344
BsrI	ACTGG	2 cut(s)	346, 388
BssECI	CCNNGG	2 cut(s)	407, 414
BssHII	GCGCGC	2 cut(s)	259, 261
BssMI	GATC	4 cut(s)	9, 53, 165, 193
BssT1I	CCWWGG	2 cut(s)	407, 414
BstC8I	GCNNGC	2 cut(s)	261, 263
BstDEI	CTNAG	1 cut(s)	173
BstEII	GGTNACC	1 cut(s)	323
BstFNI	CGCG	2 cut(s)	261, 263
BstHHI	GCGC	4 cut(s)	261, 263, 265, 429
BstKTI	GATC	4 cut(s)	12, 56, 168, 196
BstMBI	GATC	4 cut(s)	9, 53, 165, 193
BstMWI	GCNNNNNNNGC	5 cut(s)	35, 44, 308, 317, 426
BstNSI	RCATGY	1 cut(s)	208
BstPI	GGTNACC	1 cut(s)	323
BstSFI	CTRYAG	1 cut(s)	232
BstSLI	GKGCMC	1 cut(s)	141
BstUI	CGCG	2 cut(s)	261, 263
BstV1I	GCAGC	3 cut(s)	289, 292, 295
BsuRI	GGCC	2 cut(s)	38, 412
Cac8I	GCNNGC	2 cut(s)	261, 263
CfoI	GCGC	4 cut(s)	261, 263, 265, 429
Cfr13I	GGNCC	2 cut(s)	36, 411
CviAII	CATG	3 cut(s)	134, 186, 205
CviJI	RGCY	7 cut(s)	6, 38, 158, 177, 184, 288, 412
CviKI_1	RGCY	7 cut(s)	6, 38, 158, 177, 184, 288, 412
DdeI	CTNAG	1 cut(s)	173
DpnI	GATC	4 cut(s)	11, 55, 167, 195
DpnII	GATC	4 cut(s)	9, 53, 165, 193
Eco130I	CCWWGG	2 cut(s)	407, 414
Eco57I	CTGAAG	1 cut(s)	33
Eco88I	CYCGRG	1 cut(s)	78
Eco91I	GGTNACC	1 cut(s)	323
EcoO65I	GGTNACC	1 cut(s)	323
EcoT14I	CCWWGG	2 cut(s)	407, 414
EcoT22I	ATGCAT	1 cut(s)	124
ErhI	CCWWGG	2 cut(s)	407, 414
FaeI	CATG	3 cut(s)	137, 189, 208
FalI	AAGNNNNNCTT	2 cut(s)	145, 177
FatI	CATG	3 cut(s)	133, 185, 204
FbaI	TGATCA	2 cut(s)	9, 193
FblI	GTMKAC	1 cut(s)	382
Fnu4HI	GCNGC	3 cut(s)	303, 306, 309
Fsp4HI	GCNGC	3 cut(s)	303, 306, 309
GlaI	GCGC	4 cut(s)	260, 262, 264, 428
GluI	GCNGC	3 cut(s)	303, 306, 309
GsuI	CTGGAG	2 cut(s)	371, 386
HaeIII	GGCC	2 cut(s)	38, 412
HhaI	GCGC	4 cut(s)	261, 263, 265, 429
Hin1II	CATG	3 cut(s)	137, 189, 208
Hin6I	GCGC	4 cut(s)	259, 261, 263, 427
HinP1I	GCGC	4 cut(s)	259, 261, 263, 427
HinfI	GANTC	1 cut(s)	88
HphI	GGTGA	1 cut(s)	317
Hpy166II	GTNNAC	2 cut(s)	139, 383
Hpy188I	TCNGA	4 cut(s)	58, 127, 145, 224
Hpy188III	TCNNGA	3 cut(s)	51, 92, 365
Hpy8I	GTNNAC	2 cut(s)	139, 383
HpyCH4V	TGCA	2 cut(s)	122, 139
HpyF10VI	GCNNNNNNNGC	5 cut(s)	35, 44, 308, 317, 426
HpyF3I	CTNAG	1 cut(s)	173
Hsp92II	CATG	3 cut(s)	137, 189, 208
HspAI	GCGC	4 cut(s)	259, 261, 263, 427
Ksp22I	TGATCA	2 cut(s)	9, 193
Kzo9I	GATC	4 cut(s)	9, 53, 165, 193
LpnPI	CCDG	6 cut(s)	36, 77, 306, 327, 350, 401
Lsp1109I	GCAGC	3 cut(s)	289, 292, 295
LweI	GCATC	2 cut(s)	131, 228
MaeIII	GTNAC	1 cut(s)	323
MalI	GATC	4 cut(s)	11, 55, 167, 195
MboI	GATC	4 cut(s)	9, 53, 165, 193
MboII	GAAGA	1 cut(s)	160
MhlI	GDGCHC	1 cut(s)	141
MluCI	AATT	4 cut(s)	24, 106, 225, 422
MnlI	CCTC	5 cut(s)	49, 249, 289, 361, 390
Mph1103I	ATGCAT	1 cut(s)	124
MslI	CAYNNNNRTG	1 cut(s)	127
MvnI	CGCG	2 cut(s)	261, 263
MwoI	GCNNNNNNNGC	5 cut(s)	35, 44, 308, 317, 426
NdeII	GATC	4 cut(s)	9, 53, 165, 193
NlaIII	CATG	3 cut(s)	137, 189, 208
NlaIV	GGNNCC	1 cut(s)	346
NmuCI	GTSAC	1 cut(s)	323
NsiI	ATGCAT	1 cut(s)	124
NspI	RCATGY	1 cut(s)	208
PauI	GCGCGC	2 cut(s)	259, 261
PciI	ACATGT	1 cut(s)	204
PfeI	GAWTC	1 cut(s)	88
PkrI	GCNGC	3 cut(s)	304, 307, 310
PscI	ACATGT	1 cut(s)	204
PspEI	GGTNACC	1 cut(s)	323
PspN4I	GGNNCC	1 cut(s)	346
PspPI	GGNCC	2 cut(s)	36, 411
PteI	GCGCGC	2 cut(s)	259, 261
RseI	CAYNNNNRTG	1 cut(s)	127
SatI	GCNGC	3 cut(s)	303, 306, 309
Sau3AI	GATC	4 cut(s)	9, 53, 165, 193
Sau96I	GGNCC	2 cut(s)	36, 411
SduI	GDGCHC	1 cut(s)	141
SetI	ASST	4 cut(s)	8, 160, 179, 409
SfaNI	GCATC	2 cut(s)	131, 228
SfcI	CTRYAG	1 cut(s)	232
SmiMI	CAYNNNNRTG	1 cut(s)	127
Sse9I	AATT	4 cut(s)	24, 106, 225, 422
StyI	CCWWGG	2 cut(s)	407, 414
TasI	AATT	4 cut(s)	24, 106, 225, 422
TfiI	GAWTC	1 cut(s)	88
TseFI	GTSAC	1 cut(s)	323
TseI	GCWGC	3 cut(s)	302, 305, 308
Tsp45I	GTSAC	1 cut(s)	323
VneI	GTGCAC	1 cut(s)	137
XapI	RAATTY	1 cut(s)	225
XceI	RCATGY	1 cut(s)	208
XmiI	GTMKAC	1 cut(s)	382
Zsp2I	ATGCAT	1 cut(s)	124

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.