RLG00000020398

No description available

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Reverse (-)
64622564 .. 64624310
1747 bp
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UTR
Exon/CDS
Intron
RLM00000020398

Sequence Viewer

Length: 381 bp
ATGGGTTTTGTGACTCTCTCTGAAACCGTCGAATTCTTCAAAATCACCAAAGGATGCAAATCTTTTAGCTCAAAGCCATGTTGTGATCGCTACATATGGAGTTTGAGCATCAGAATTTTCTATAGAGAATTCTATGGACAAATGGGGGACTTTACTCGTTGCTGGTCGCTGATGGTGTCTTACTGGCACCCCTATACAGGATTTGTGAAAGCTTGTTTGTACTTGCGTATAGCTTCTGGTCTTCTGGTACCAGAAGCCAAGCTGTTTCTGCATTTGGAGAATTTGCTTTACGTGGTAAAAGCCAAACCCCATGATCGCAGGATGATGTTTGCCTCACCAATTGTGCAAACTAAGTTGAGCCGAAGTGATTCTCTCTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

127

Amino Acids

14.73

Weight (kDa)

9.34

Isoelectric Point (pI)

32.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 247
AccB1I GGYRCC 2 cut(s) 186, 247
AcsI RAATTY 4 cut(s) 32, 114, 128, 280
AfaI GTAC 2 cut(s) 221, 249
AfiI CCNNNNNNNGG 1 cut(s) 197
AgsI TTSAA 1 cut(s) 40
AluBI AGCT 4 cut(s) 69, 212, 233, 262
AluI AGCT 4 cut(s) 69, 212, 233, 262
ApoI RAATTY 4 cut(s) 32, 114, 128, 280
Asp700I GAANNNNTTC 1 cut(s) 367
Asp718I GGTACC 1 cut(s) 247
AsuHPI GGTGA 2 cut(s) 37, 327
BanI GGYRCC 2 cut(s) 186, 247
BbsI GAAGAC 1 cut(s) 233
BccI CCATC 1 cut(s) 166
BfmI CTRYAG 1 cut(s) 121
BmiI GGNNCC 2 cut(s) 188, 249
BmsI GCATC 2 cut(s) 44, 117
BpiI GAAGAC 1 cut(s) 233
BsaAI YACGTR 1 cut(s) 292
BsaBI GATNNNNATC 1 cut(s) 58
Bsc4I CCNNNNNNNGG 1 cut(s) 197
Bse1I ACTGG 1 cut(s) 188
Bse8I GATNNNNATC 1 cut(s) 58
BseGI GGATG 2 cut(s) 59, 327
BseJI GATNNNNATC 1 cut(s) 58
BseLI CCNNNNNNNGG 1 cut(s) 197
BseNI ACTGG 1 cut(s) 188
BshNI GGYRCC 2 cut(s) 186, 247
BslFI GGGAC 1 cut(s) 161
BslI CCNNNNNNNGG 1 cut(s) 197
BsmFI GGGAC 1 cut(s) 161
Bsp143I GATC 2 cut(s) 85, 313
BspLI GGNNCC 2 cut(s) 188, 249
BspT107I GGYRCC 2 cut(s) 186, 247
BsrI ACTGG 1 cut(s) 188
BssMI GATC 2 cut(s) 85, 313
Bst4CI ACNGT 1 cut(s) 28
BstBAI YACGTR 1 cut(s) 292
BstDEI CTNAG 1 cut(s) 351
BstF5I GGATG 2 cut(s) 59, 327
BstKTI GATC 2 cut(s) 88, 316
BstMBI GATC 2 cut(s) 85, 313
BstMWI GCNNNNNNNGC 1 cut(s) 268
BstSFI CTRYAG 1 cut(s) 121
BstV2I GAAGAC 1 cut(s) 233
BtsCI GGATG 2 cut(s) 59, 327
Csp6I GTAC 2 cut(s) 220, 248
CviAII CATG 2 cut(s) 78, 311
CviJI RGCY 8 cut(s) 69, 76, 212, 233, 257, 262, 302, 360
CviKI_1 RGCY 8 cut(s) 69, 76, 212, 233, 257, 262, 302, 360
CviQI GTAC 2 cut(s) 220, 248
DdeI CTNAG 1 cut(s) 351
DpnI GATC 2 cut(s) 87, 315
DpnII GATC 2 cut(s) 85, 313
EcoRI GAATTC 2 cut(s) 32, 128
FaeI CATG 2 cut(s) 81, 314
FaiI YATR 8 cut(s) 79, 95, 97, 123, 135, 195, 230, 312
FaqI GGGAC 1 cut(s) 161
FatI CATG 2 cut(s) 77, 310
FauNDI CATATG 1 cut(s) 95
FokI GGATG 2 cut(s) 66, 334
Hin1II CATG 2 cut(s) 81, 314
HindIII AAGCTT 1 cut(s) 210
HinfI GANTC 2 cut(s) 13, 368
HphI GGTGA 2 cut(s) 37, 327
Hpy188I TCNGA 2 cut(s) 22, 113
Hpy99I CGWCG 1 cut(s) 32
HpyCH4III ACNGT 1 cut(s) 28
HpyCH4IV ACGT 1 cut(s) 291
HpyCH4V TGCA 3 cut(s) 57, 271, 346
HpyF10VI GCNNNNNNNGC 1 cut(s) 268
HpyF3I CTNAG 1 cut(s) 351
HpySE526I ACGT 1 cut(s) 291
Hsp92II CATG 2 cut(s) 81, 314
KpnI GGTACC 1 cut(s) 251
Kzo9I GATC 2 cut(s) 85, 313
LpnPI CCDG 7 cut(s) 148, 169, 183, 222, 230, 264, 304
LweI GCATC 2 cut(s) 44, 117
MaeII ACGT 1 cut(s) 291
MaeIII GTNAC 1 cut(s) 10
MalI GATC 2 cut(s) 87, 315
MboI GATC 2 cut(s) 85, 313
MboII GAAGA 2 cut(s) 28, 233
MfeI CAATTG 1 cut(s) 339
MluCI AATT 5 cut(s) 32, 114, 128, 280, 339
MlyI GAGTC 1 cut(s) 7
MnlI CCTC 1 cut(s) 343
MroXI GAANNNNTTC 1 cut(s) 367
MseI TTAA 1 cut(s) 379
MunI CAATTG 1 cut(s) 339
MwoI GCNNNNNNNGC 1 cut(s) 268
NdeI CATATG 1 cut(s) 95
NdeII GATC 2 cut(s) 85, 313
NlaIII CATG 2 cut(s) 81, 314
NlaIV GGNNCC 2 cut(s) 188, 249
NmuCI GTSAC 1 cut(s) 10
PdmI GAANNNNTTC 1 cut(s) 367
PfeI GAWTC 1 cut(s) 368
PleI GAGTC 1 cut(s) 7
PpsI GAGTC 1 cut(s) 7
Ppu21I YACGTR 1 cut(s) 292
PspN4I GGNNCC 2 cut(s) 188, 249
RsaI GTAC 2 cut(s) 221, 249
RsaNI GTAC 2 cut(s) 220, 248
SaqAI TTAA 1 cut(s) 379
Sau3AI GATC 2 cut(s) 85, 313
SchI GAGTC 1 cut(s) 7
SetI ASST 5 cut(s) 71, 214, 235, 264, 294
SfaNI GCATC 2 cut(s) 44, 117
SfcI CTRYAG 1 cut(s) 121
Sse9I AATT 5 cut(s) 32, 114, 128, 280, 339
TaaI ACNGT 1 cut(s) 28
TaiI ACGT 1 cut(s) 294
TaqI TCGA 1 cut(s) 30
TasI AATT 5 cut(s) 32, 114, 128, 280, 339
TatI WGTACW 1 cut(s) 219
TfiI GAWTC 1 cut(s) 368
Tru1I TTAA 1 cut(s) 379
Tru9I TTAA 1 cut(s) 379
TseFI GTSAC 1 cut(s) 10
Tsp45I GTSAC 1 cut(s) 10
XapI RAATTY 4 cut(s) 32, 114, 128, 280
XmnI GAANNNNTTC 1 cut(s) 367
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.