Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0001176

Physical Location & Seq

Genomic Coordinates Reverse (-)

21671833 .. 21683408

Gene Structure 11576 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG101900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGATGTGTGACTCACCGATTGTGCAAACTAAGTTGAGCCAAAGTGATTCTCTCTGTAAATATTCTCATTCTAGCATCTCATGTGATTCTAAATTTCAGTCAGAGGTTGTGAAAGATGACTCGTTGTCAAAGGTACAAAGATTGGAACAGCAGCTGCTTGAAGAAATAGAGCTACGTGCTATTCTGGAAAATGCAATTGAGAAAAATGCTACTAAATTCTCCAGTCCCGCATGCCTTCCTTACAACGCTCAAGAGCTCCTAAGCATTATTGCTGCAGTGGAGGTGACAGTTTCAGAACTAGAACAGGAGTTGGTTGCATTGCATTTCCAACCAAGTCAAGAAAGAAATGAAAGAAGGCTGGCAGAATATCGTCTGAGGCATCCATCTCCTCGGTCAATGTCTCCTCGCCCGTCTAGCATTATGAAACTGCCGATTTCATCTTCCAGAGTGTCTGTCTACTTGCAGGCCTCTTTTGTCCTGTGCCGAGTATTTGTCAGATCTCAAGGTGGAACTACCAAATCAGAGAATGGCTTAAGTTCTTGTGCTGAAGAAACTGTTTCCACAGTATGTCACATTGGAATTCAGCATGGTGGATTTTGTACTCCTCATATTGTTCCTGAGATTCACAGTGACAAATCTGTGCCTAGGAACACTGACAAGTCAAAAGATCAAATGACACTGGAGACTGAAGTTGATAAGCAAGTCGATCGAGACTGGGCCTCTACCAAGTATTCAGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF547 Lzipper-MIP1

Protein Analysis

246

Amino Acids

27.55

Weight (kDa)

5.85

Isoelectric Point (pI)

73.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lzipper-MIP1	PF14389	40 - 114	7.8e-15	Leucine-zipper of ternary complex factor MIP1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001176)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13000 AT3G13000 AT3G13000
fragaria_vesca	FvH4_6g36420 FvH4_6g36420 FvH4_6g36420 FvH4_6g36420 FvH4_6g36420 FvH4_6g36420 FvH4_6g36420 FvH4_6g36420
malus_domestica	MD09G1169500.v1.1 MD17G1157700.v1.1
prunus_persica	Prupe.3G027500_v2.0.a1 Prupe.3G027500_v2.0.a1 Prupe.3G027500_v2.0.a1 Prupe.3G027500_v2.0.a1 Prupe.3G027500_v2.0.a1 Prupe.3G027500_v2.0.a1 Prupe.3G027500_v2.0.a1 Prupe.3G027500_v2.0.a1 Prupe.3G027500_v2.0.a1 Prupe.3G027500_v2.0.a1
pyrus_communis	pycom09g08690 pycom17g15090
rosa_chinensis	RchiOBHm_Chr1g0315101 RchiOBHm_Chr1g0315561 RchiOBHm_Chr1g0322971 RchiOBHm_Chr2g0090201 RchiOBHm_Chr2g0148391 RchiOBHm_Chr5g0049331
rosa_laevigata	RLG00000002464 RLG00000019778 RLG00000020347 RLG00000020398 RLG00000030746
rosa_multiflora	Rmu_co8078922.1_g000001 Rmu_sc0007047.1_g000001 Rmu_sc0009059.1_g000004
rosa_roxburghii	Rroxscaffold_2G00098770
rosa_rugosa	Rorug01G0399600 Rorug02G0406300 Rorug02G0406400 Rorug02G0406500 Rorug02G0406600 Rorug02G0406700
rosa_samantha	Rh1AG015100 Rh1AG015300 Rh2AG465400 Rh2BG478300 Rh2CG451900 Rh2DG487100 Rh4AG101900 Rh4AG113600 Rh4CG175600
rosa_wichuraiana	Rw1G000760 Rw2G037930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	456
AciI	CCGC	1 cut(s)	228
AcsI	RAATTY	3 cut(s)	92, 215, 579
AcuI	CTGAAG	2 cut(s)	567, 708
AfaI	GTAC	2 cut(s)	135, 601
AflII	CTTAAG	1 cut(s)	532
AgsI	TTSAA	1 cut(s)	161
AhdI	GACNNNNNGTC	1 cut(s)	124
AluBI	AGCT	3 cut(s)	154, 172, 256
AluI	AGCT	3 cut(s)	154, 172, 256
Alw21I	GWGCWC	1 cut(s)	258
Alw26I	GTCTC	3 cut(s)	405, 677, 705
AlwNI	CAGNNNCTG	1 cut(s)	154
AoxI	GGCC	2 cut(s)	465, 717
ApeKI	GCWGC	3 cut(s)	151, 154, 272
ApoI	RAATTY	3 cut(s)	92, 215, 579
AspA2I	CCTAGG	1 cut(s)	644
AspS9I	GGNCC	1 cut(s)	717
AsuHPI	GGTGA	2 cut(s)	6, 295
AvrII	CCTAGG	1 cut(s)	644
BanII	GRGCYC	1 cut(s)	258
Bbv12I	GWGCWC	1 cut(s)	258
BbvI	GCAGC	3 cut(s)	141, 163, 259
BccI	CCATC	1 cut(s)	391
BcgI	CGANNNNNNTGC	2 cut(s)	689, 723
BcoDI	GTCTC	3 cut(s)	405, 677, 705
BfaI	CTAG	4 cut(s)	72, 299, 414, 645
BfmI	CTRYAG	1 cut(s)	273
BfrI	CTTAAG	1 cut(s)	532
BglII	AGATCT	1 cut(s)	497
BisI	GCNGC	3 cut(s)	152, 155, 273
BlnI	CCTAGG	1 cut(s)	644
BlsI	GCNGC	3 cut(s)	153, 156, 274
BmeRI	GACNNNNNGTC	1 cut(s)	124
BmgT120I	GGNCC	1 cut(s)	717
BmrI	ACTGGG	1 cut(s)	724
BmsI	GCATC	2 cut(s)	84, 388
BmuI	ACTGGG	1 cut(s)	724
BpmI	CTGGAG	2 cut(s)	205, 701
Bpu10I	CCTNAGC	1 cut(s)	260
BpuEI	CTTGAG	2 cut(s)	234, 486
BsaAI	YACGTR	1 cut(s)	176
BsaJI	CCNNGG	2 cut(s)	389, 644
Bse1I	ACTGG	3 cut(s)	222, 684, 719
Bse3DI	GCAATG	1 cut(s)	317
BseDI	CCNNGG	2 cut(s)	389, 644
BseGI	GGATG	1 cut(s)	379
BseMI	GCAATG	1 cut(s)	317
BseMII	CTCAG	2 cut(s)	365, 609
BseNI	ACTGG	3 cut(s)	222, 684, 719
BseRI	GAGGAG	3 cut(s)	378, 393, 594
BseXI	GCAGC	3 cut(s)	141, 163, 259
Bsh1285I	CGRYCG	1 cut(s)	709
BshFI	GGCC	2 cut(s)	467, 719
BsiEI	CGRYCG	1 cut(s)	709
BsiHKAI	GWGCWC	1 cut(s)	258
BslFI	GGGAC	1 cut(s)	210
BsmAI	GTCTC	3 cut(s)	405, 677, 705
BsmFI	GGGAC	1 cut(s)	210
BsnI	GGCC	2 cut(s)	467, 719
Bsp1286I	GDGCHC	1 cut(s)	258
Bsp143I	GATC	3 cut(s)	497, 667, 706
BspACI	CCGC	1 cut(s)	228
BspANI	GGCC	2 cut(s)	467, 719
BspCNI	CTCAG	2 cut(s)	366, 610
BspMAI	CTGCAG	1 cut(s)	277
BspTI	CTTAAG	1 cut(s)	532
BsrDI	GCAATG	1 cut(s)	317
BsrI	ACTGG	3 cut(s)	222, 684, 719
BssECI	CCNNGG	2 cut(s)	389, 644
BssMI	GATC	3 cut(s)	497, 667, 706
BssT1I	CCWWGG	1 cut(s)	644
Bst4CI	ACNGT	4 cut(s)	289, 556, 565, 629
BstAFI	CTTAAG	1 cut(s)	532
BstBAI	YACGTR	1 cut(s)	176
BstC8I	GCNNGC	3 cut(s)	232, 360, 465
BstDEI	CTNAG	4 cut(s)	30, 260, 374, 618
BstF5I	GGATG	1 cut(s)	379
BstKTI	GATC	3 cut(s)	500, 670, 709
BstMAI	GTCTC	3 cut(s)	405, 677, 705
BstMBI	GATC	3 cut(s)	497, 667, 706
BstMCI	CGRYCG	1 cut(s)	709
BstMWI	GCNNNNNNNGC	1 cut(s)	414
BstNSI	RCATGY	1 cut(s)	234
BstSFI	CTRYAG	1 cut(s)	273
BstV1I	GCAGC	3 cut(s)	141, 163, 259
BstX2I	RGATCY	1 cut(s)	497
BstYI	RGATCY	1 cut(s)	497
BsuRI	GGCC	2 cut(s)	467, 719
BtsCI	GGATG	1 cut(s)	379
BtsI	GCAGTG	1 cut(s)	282
BtsIMutI	CAGTG	4 cut(s)	282, 634, 651, 677
Cac8I	GCNNGC	3 cut(s)	232, 360, 465
CaiI	CAGNNNCTG	1 cut(s)	154
Cfr13I	GGNCC	1 cut(s)	717
Csp6I	GTAC	2 cut(s)	134, 600
CviAII	CATG	3 cut(s)	81, 231, 587
CviJI	RGCY	8 cut(s)	39, 154, 172, 256, 358, 467, 531, 719
CviKI_1	RGCY	8 cut(s)	39, 154, 172, 256, 358, 467, 531, 719
CviQI	GTAC	2 cut(s)	134, 600
DdeI	CTNAG	4 cut(s)	30, 260, 374, 618
DpnI	GATC	3 cut(s)	499, 669, 708
DpnII	GATC	3 cut(s)	497, 667, 706
DriI	GACNNNNNGTC	1 cut(s)	124
Eam1105I	GACNNNNNGTC	1 cut(s)	124
Ecl136II	GAGCTC	1 cut(s)	256
Eco130I	CCWWGG	1 cut(s)	644
Eco147I	AGGCCT	1 cut(s)	467
Eco24I	GRGCYC	1 cut(s)	258
Eco53kI	GAGCTC	1 cut(s)	256
Eco57I	CTGAAG	2 cut(s)	567, 708
EcoICRI	GAGCTC	1 cut(s)	256
EcoRI	GAATTC	1 cut(s)	579
EcoT14I	CCWWGG	1 cut(s)	644
EcoT38I	GRGCYC	1 cut(s)	258
ErhI	CCWWGG	1 cut(s)	644
FaeI	CATG	3 cut(s)	84, 234, 590
FaiI	YATR	6 cut(s)	82, 232, 422, 568, 588, 609
FaqI	GGGAC	1 cut(s)	210
FatI	CATG	3 cut(s)	80, 230, 586
FauI	CCCGC	1 cut(s)	235
FblI	GTMKAC	1 cut(s)	456
Fnu4HI	GCNGC	3 cut(s)	152, 155, 273
FokI	GGATG	1 cut(s)	366
FriOI	GRGCYC	1 cut(s)	258
Fsp4HI	GCNGC	3 cut(s)	152, 155, 273
FspBI	CTAG	4 cut(s)	72, 299, 414, 645
GluI	GCNGC	3 cut(s)	152, 155, 273
GsuI	CTGGAG	2 cut(s)	205, 701
HaeIII	GGCC	2 cut(s)	467, 719
Hin1II	CATG	3 cut(s)	84, 234, 590
HinfI	GANTC	5 cut(s)	11, 47, 86, 119, 622
HphI	GGTGA	2 cut(s)	6, 295
Hpy166II	GTNNAC	1 cut(s)	457
Hpy188I	TCNGA	6 cut(s)	103, 295, 375, 497, 523, 736
Hpy188III	TCNNGA	6 cut(s)	185, 251, 338, 444, 617, 710
Hpy8I	GTNNAC	1 cut(s)	457
HpyAV	CCTTC	2 cut(s)	245, 348
HpyCH4III	ACNGT	4 cut(s)	289, 556, 565, 629
HpyCH4IV	ACGT	1 cut(s)	175
HpyCH4V	TGCA	6 cut(s)	25, 194, 275, 317, 322, 463
HpyF10VI	GCNNNNNNNGC	1 cut(s)	414
HpyF3I	CTNAG	4 cut(s)	30, 260, 374, 618
HpySE526I	ACGT	1 cut(s)	175
Hsp92II	CATG	3 cut(s)	84, 234, 590
Kzo9I	GATC	3 cut(s)	497, 667, 706
LmnI	GCTCC	1 cut(s)	261
Lsp1109I	GCAGC	3 cut(s)	141, 163, 259
LweI	GCATC	2 cut(s)	84, 388
MaeI	CTAG	4 cut(s)	72, 299, 414, 645
MaeII	ACGT	1 cut(s)	175
MaeIII	GTNAC	4 cut(s)	8, 283, 569, 629
MalI	GATC	3 cut(s)	499, 669, 708
MboI	GATC	3 cut(s)	497, 667, 706
MboII	GAAGA	3 cut(s)	173, 432, 560
MfeI	CAATTG	1 cut(s)	195
MflI	RGATCY	1 cut(s)	497
MhlI	GDGCHC	1 cut(s)	258
MluCI	AATT	4 cut(s)	92, 195, 215, 579
MlyI	GAGTC	2 cut(s)	5, 113
MmeI	TCCRAC	1 cut(s)	352
MnlI	CCTC	8 cut(s)	97, 274, 369, 399, 414, 478, 615, 730
MseI	TTAA	1 cut(s)	533
MspA1I	CMGCKG	1 cut(s)	154
MspCI	CTTAAG	1 cut(s)	532
MunI	CAATTG	1 cut(s)	195
MwoI	GCNNNNNNNGC	1 cut(s)	414
NdeII	GATC	3 cut(s)	497, 667, 706
NlaIII	CATG	3 cut(s)	84, 234, 590
NmeAIII	GCCGAG	1 cut(s)	509
NmuCI	GTSAC	4 cut(s)	8, 283, 569, 629
NspI	RCATGY	1 cut(s)	234
PaeI	GCATGC	1 cut(s)	234
PceI	AGGCCT	1 cut(s)	467
PfeI	GAWTC	3 cut(s)	47, 86, 622
PkrI	GCNGC	3 cut(s)	153, 156, 274
Ple19I	CGATCG	1 cut(s)	709
PleI	GAGTC	2 cut(s)	5, 113
PpsI	GAGTC	2 cut(s)	5, 113
Ppu21I	YACGTR	1 cut(s)	176
Psp124BI	GAGCTC	1 cut(s)	258
PspPI	GGNCC	1 cut(s)	717
PstI	CTGCAG	1 cut(s)	277
PstNI	CAGNNNCTG	1 cut(s)	154
PsuI	RGATCY	1 cut(s)	497
PvuI	CGATCG	1 cut(s)	709
PvuII	CAGCTG	1 cut(s)	154
RsaI	GTAC	2 cut(s)	135, 601
RsaNI	GTAC	2 cut(s)	134, 600
SacI	GAGCTC	1 cut(s)	258
SaqAI	TTAA	1 cut(s)	533
SatI	GCNGC	3 cut(s)	152, 155, 273
Sau3AI	GATC	3 cut(s)	497, 667, 706
Sau96I	GGNCC	1 cut(s)	717
SchI	GAGTC	2 cut(s)	5, 113
SduI	GDGCHC	1 cut(s)	258
SetI	ASST	8 cut(s)	108, 135, 156, 174, 178, 258, 285, 508
SfaNI	GCATC	2 cut(s)	84, 388
SfcI	CTRYAG	1 cut(s)	273
SmlI	CTYRAG	3 cut(s)	249, 501, 532
SmoI	CTYRAG	3 cut(s)	249, 501, 532
SphI	GCATGC	1 cut(s)	234
Sse9I	AATT	4 cut(s)	92, 195, 215, 579
SseBI	AGGCCT	1 cut(s)	467
SsiI	CCGC	1 cut(s)	228
SspI	AATATT	1 cut(s)	62
SspMI	CTAG	4 cut(s)	72, 299, 414, 645
SstI	GAGCTC	1 cut(s)	258
StuI	AGGCCT	1 cut(s)	467
StyI	CCWWGG	1 cut(s)	644
TaaI	ACNGT	4 cut(s)	289, 556, 565, 629
TaiI	ACGT	1 cut(s)	178
TaqI	TCGA	2 cut(s)	705, 709
TaqII	GACCGA	1 cut(s)	381
TasI	AATT	4 cut(s)	92, 195, 215, 579
TatI	WGTACW	1 cut(s)	599
TfiI	GAWTC	3 cut(s)	47, 86, 622
Tru1I	TTAA	1 cut(s)	533
Tru9I	TTAA	1 cut(s)	533
TscAI	CASTG	4 cut(s)	282, 634, 658, 684
TseFI	GTSAC	4 cut(s)	8, 283, 569, 629
TseI	GCWGC	3 cut(s)	151, 154, 272
Tsp45I	GTSAC	4 cut(s)	8, 283, 569, 629
TspDTI	ATGAA	3 cut(s)	363, 426, 437
TspRI	CASTG	4 cut(s)	282, 634, 658, 684
Vha464I	CTTAAG	1 cut(s)	532
XapI	RAATTY	3 cut(s)	92, 215, 579
XceI	RCATGY	1 cut(s)	234
XmaJI	CCTAGG	1 cut(s)	644
XmiI	GTMKAC	1 cut(s)	456
XspI	CTAG	4 cut(s)	72, 299, 414, 645

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.