Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001176

Physical Location & Seq

Genomic Coordinates Forward (+)

51858492 .. 51861487

Gene Structure 2996 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0406300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGGATTTCAGGATTGTAGAGGCAATTGAGAGAAAGGACATAGTCACATTTGCTAGCTTAGTCCGAGAAAATGAAGGAATTCTCGAGCAAAGAGAAGCCGATACTTGCAACACGCCATTACACCTTGTGTCAAAGTTTGGATACCTTGAAATGGTGTCTGAAATTGTTTCTTTGTGTCCGGACATGGTTGCTGCTGAGAATAAGAACCAGGAGACTCCAGTCCATGAAGCTTGTCGAACAGGGAATCCCCGGATTTTAAAGATACTGCTGGAGGCGAATCCTGAGGTAGTTAGTAAGCTTAACAGTAAAGAAAAGGTCAGTGCACTTTCTCTGGCATGTAGCTATGGTCATCTTGATGTGGTGAGGCTCTTACTGAAAGAGCCTGGGAAGCTGGGTTTAGGGAAAGAAGGGTTTGATCAAACTTGTATACACTTGGCCGTGTCTGGTGGACACATGGATGTTGTTAAAGAGTTGCTAAGAGTGTGTCCTGACCTTGCTTATATGGTTGATGAGAAAGGAAACTATCCATTGCACTATGCAACTAGCAAAGAGAACAGGGAGATAACCTGGGCACTCCTCAAGCTTGATCCAAAGCTTGCTCAGCAGCACAATCTCAGTGGTCACACGCCCTTGCACTCGGCAGCAATAAACTACAAAGTCTCAGTCCTTCAAGTGTTCGTCTCAATGGCTAAACCAGCTTTTCAGATCGTAACAAAAGCCGGCGAGACGGTATTCCACTTGGTTGTGAAATATGGGCGATATGATGCTTTAGTATACTTGACCCATGTCTGTGATGATATGGATTTCTTCGACTGTAGAGACTGTTATAATAACACCATCCTACATCTTGCAGTTTCTGAAGCACAACATAAGATAGCAGAGTACCTAGCTAATCAGCAAAAAGAAAGTAGAGCTCAATTCTCGAAACAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF547 Lzipper-MIP1

Protein Analysis

310

Amino Acids

34.81

Weight (kDa)

6.12

Isoelectric Point (pI)

25.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ank_2	PF12796	32 - 96	1.8e-08	Ankyrin repeats (3 copies)
Ank_2	PF12796	40 - 127	6.2e-13	Ankyrin repeats (3 copies)
Ank_2	PF12796	101 - 159	4.6e-08	Ankyrin repeats (3 copies)
Ank_2	PF12796	109 - 196	2.1e-13	Ankyrin repeats (3 copies)
Ank_2	PF12796	143 - 227	9.3e-11	Ankyrin repeats (3 copies)
Ank_2	PF12796	211 - 299	2.8e-08	Ankyrin repeats (3 copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001176)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13000 AT3G13000 AT3G13000
fragaria_vesca	FvH4_6g36420 FvH4_6g36420 FvH4_6g36420 FvH4_6g36420 FvH4_6g36420 FvH4_6g36420 FvH4_6g36420 FvH4_6g36420
malus_domestica	MD09G1169500.v1.1 MD17G1157700.v1.1
prunus_persica	Prupe.3G027500_v2.0.a1 Prupe.3G027500_v2.0.a1 Prupe.3G027500_v2.0.a1 Prupe.3G027500_v2.0.a1 Prupe.3G027500_v2.0.a1 Prupe.3G027500_v2.0.a1 Prupe.3G027500_v2.0.a1 Prupe.3G027500_v2.0.a1 Prupe.3G027500_v2.0.a1 Prupe.3G027500_v2.0.a1
pyrus_communis	pycom09g08690 pycom17g15090
rosa_chinensis	RchiOBHm_Chr1g0315101 RchiOBHm_Chr1g0315561 RchiOBHm_Chr1g0322971 RchiOBHm_Chr2g0090201 RchiOBHm_Chr2g0148391 RchiOBHm_Chr5g0049331
rosa_laevigata	RLG00000002464 RLG00000019778 RLG00000020347 RLG00000020398 RLG00000030746
rosa_multiflora	Rmu_co8078922.1_g000001 Rmu_sc0007047.1_g000001 Rmu_sc0009059.1_g000004
rosa_roxburghii	Rroxscaffold_2G00098770
rosa_rugosa	Rorug01G0399600 Rorug02G0406300 Rorug02G0406400 Rorug02G0406500 Rorug02G0406600 Rorug02G0406700
rosa_samantha	Rh1AG015100 Rh1AG015300 Rh2AG465400 Rh2BG478300 Rh2CG451900 Rh2DG487100 Rh4AG101900 Rh4AG113600 Rh4CG175600
rosa_wichuraiana	Rw1G000760 Rw2G037930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	828
AccI	GTMKAC	2 cut(s)	427, 774
AccIII	TCCGGA	1 cut(s)	178
AclWI	GGATC	1 cut(s)	581
AcoI	YGGCCR	1 cut(s)	435
AcsI	RAATTY	1 cut(s)	78
AcuI	CTGAAG	1 cut(s)	879
AdeI	CACNNNGTG	1 cut(s)	127
AfaI	GTAC	1 cut(s)	884
AfiI	CCNNNNNNNGG	1 cut(s)	151
AgsI	TTSAA	2 cut(s)	149, 671
AjnI	CCWGG	3 cut(s)	207, 382, 566
AloI	GAACNNNNNNTCC	2 cut(s)	229, 261
Alw21I	GWGCWC	2 cut(s)	325, 916
Alw26I	GTCTC	5 cut(s)	206, 664, 685, 719, 813
Alw44I	GTGCAC	1 cut(s)	321
AlwI	GGATC	1 cut(s)	581
AlwNI	CAGNNNCTG	1 cut(s)	857
Ama87I	CYCGRG	1 cut(s)	83
Aor13HI	TCCGGA	1 cut(s)	178
AoxI	GGCC	1 cut(s)	435
ApaLI	GTGCAC	1 cut(s)	321
ApeKI	GCWGC	3 cut(s)	191, 604, 641
ApoI	RAATTY	1 cut(s)	78
ArsI	GACNNNNNNTTYG	2 cut(s)	648, 680
Asp700I	GAANNNNTTC	1 cut(s)	78
AsuC2I	CCSGG	1 cut(s)	250
AsuHPI	GGTGA	1 cut(s)	373
AsuNHI	GCTAGC	1 cut(s)	53
AvaI	CYCGRG	1 cut(s)	83
AxyI	CCTNAGG	1 cut(s)	282
BaeGI	GKGCMC	2 cut(s)	325, 574
BanII	GRGCYC	1 cut(s)	916
Bbv12I	GWGCWC	2 cut(s)	325, 916
BbvI	GCAGC	3 cut(s)	178, 616, 653
BccI	CCATC	1 cut(s)	845
BceAI	ACGGC	1 cut(s)	422
BciT130I	CCWGG	3 cut(s)	209, 384, 568
BciVI	GTATCC	1 cut(s)	134
BclI	TGATCA	1 cut(s)	415
BcnI	CCSGG	1 cut(s)	250
BcoDI	GTCTC	5 cut(s)	206, 664, 685, 719, 813
BfaI	CTAG	3 cut(s)	54, 543, 887
BfmI	CTRYAG	1 cut(s)	814
BfuI	GTATCC	1 cut(s)	134
BisI	GCNGC	3 cut(s)	192, 605, 642
BlpI	GCTNAGC	1 cut(s)	600
BlsI	GCNGC	3 cut(s)	193, 606, 643
Bme1390I	CCNGG	4 cut(s)	209, 250, 384, 568
BmeT110I	CYCGRG	1 cut(s)	83
BmrFI	CCNGG	4 cut(s)	209, 250, 384, 568
BmsI	GCATC	1 cut(s)	754
BmtI	GCTAGC	1 cut(s)	57
BoxI	GACNNNNGTC	2 cut(s)	218, 785
BpmI	CTGGAG	2 cut(s)	201, 290
Bpu1102I	GCTNAGC	1 cut(s)	600
BpuEI	CTTGAG	1 cut(s)	563
BpuMI	CCSGG	1 cut(s)	250
BsaJI	CCNNGG	3 cut(s)	248, 383, 567
BsaWI	WCCGGW	1 cut(s)	178
Bsc4I	CCNNNNNNNGG	1 cut(s)	151
Bse118I	RCCGGY	1 cut(s)	719
Bse1I	ACTGG	1 cut(s)	218
Bse21I	CCTNAGG	1 cut(s)	282
Bse3DI	GCAATG	1 cut(s)	527
BseAI	TCCGGA	1 cut(s)	178
BseBI	CCWGG	3 cut(s)	209, 384, 568
BseDI	CCNNGG	3 cut(s)	248, 383, 567
BseGI	GGATG	2 cut(s)	463, 837
BseLI	CCNNNNNNNGG	1 cut(s)	151
BseMI	GCAATG	1 cut(s)	527
BseMII	CTCAG	5 cut(s)	186, 273, 614, 628, 675
BseNI	ACTGG	1 cut(s)	218
BseRI	GAGGAG	1 cut(s)	566
BseSI	GKGCMC	2 cut(s)	325, 574
BseXI	GCAGC	3 cut(s)	178, 616, 653
BseYI	CCCAGC	1 cut(s)	391
BshFI	GGCC	1 cut(s)	437
BsiHKAI	GWGCWC	2 cut(s)	325, 916
BsiHKCI	CYCGRG	1 cut(s)	83
BsiSI	CCGG	3 cut(s)	179, 250, 720
BslI	CCNNNNNNNGG	1 cut(s)	151
BsmAI	GTCTC	5 cut(s)	206, 664, 685, 719, 813
BsmBI	CGTCTC	2 cut(s)	685, 719
BsnI	GGCC	1 cut(s)	437
BsoBI	CYCGRG	1 cut(s)	83
Bsp1286I	GDGCHC	3 cut(s)	325, 574, 916
Bsp13I	TCCGGA	1 cut(s)	178
Bsp143I	GATC	3 cut(s)	415, 586, 705
Bsp1720I	GCTNAGC	1 cut(s)	600
BspANI	GGCC	1 cut(s)	437
BspCNI	CTCAG	5 cut(s)	187, 274, 613, 627, 674
BspEI	TCCGGA	1 cut(s)	178
BspOI	GCTAGC	1 cut(s)	57
BspPI	GGATC	1 cut(s)	581
BsrDI	GCAATG	1 cut(s)	527
BsrFI	RCCGGY	1 cut(s)	719
BsrI	ACTGG	1 cut(s)	218
BssAI	RCCGGY	1 cut(s)	719
BssECI	CCNNGG	3 cut(s)	248, 383, 567
BssMI	GATC	3 cut(s)	415, 586, 705
BssNAI	GTATAC	2 cut(s)	428, 775
Bst1107I	GTATAC	2 cut(s)	428, 775
Bst2UI	CCWGG	3 cut(s)	209, 384, 568
Bst4CI	ACNGT	4 cut(s)	305, 730, 815, 824
BstC8I	GCNNGC	3 cut(s)	55, 597, 721
BstDEI	CTNAG	7 cut(s)	58, 195, 282, 476, 600, 614, 661
BstF5I	GGATG	2 cut(s)	463, 837
BstKTI	GATC	3 cut(s)	418, 589, 708
BstMAI	GTCTC	5 cut(s)	206, 664, 685, 719, 813
BstMBI	GATC	3 cut(s)	415, 586, 705
BstMWI	GCNNNNNNNGC	3 cut(s)	388, 601, 695
BstNI	CCWGG	3 cut(s)	209, 384, 568
BstNSI	RCATGY	1 cut(s)	339
BstPAI	GACNNNNGTC	2 cut(s)	218, 785
BstSCI	CCNGG	4 cut(s)	207, 248, 382, 566
BstSFI	CTRYAG	1 cut(s)	814
BstSLI	GKGCMC	2 cut(s)	325, 574
BstV1I	GCAGC	3 cut(s)	178, 616, 653
BstZ17I	GTATAC	2 cut(s)	428, 775
Bsu36I	CCTNAGG	1 cut(s)	282
BsuI	GTATCC	1 cut(s)	134
BsuRI	GGCC	1 cut(s)	437
BtsCI	GGATG	2 cut(s)	463, 837
BtsIMutI	CAGTG	2 cut(s)	325, 622
Cac8I	GCNNGC	3 cut(s)	55, 597, 721
CaiI	CAGNNNCTG	1 cut(s)	857
Cfr10I	RCCGGY	1 cut(s)	719
Csp6I	GTAC	1 cut(s)	883
CspCI	CAANNNNNGTGG	2 cut(s)	598, 633
CviAII	CATG	5 cut(s)	184, 224, 336, 454, 785
CviQI	GTAC	1 cut(s)	883
DdeI	CTNAG	7 cut(s)	58, 195, 282, 476, 600, 614, 661
DpnI	GATC	3 cut(s)	417, 588, 707
DpnII	GATC	3 cut(s)	415, 586, 705
DraI	TTTAAA	1 cut(s)	258
DraIII	CACNNNGTG	1 cut(s)	127
EaeI	YGGCCR	1 cut(s)	435
Ecl136II	GAGCTC	1 cut(s)	914
Eco24I	GRGCYC	1 cut(s)	916
Eco53kI	GAGCTC	1 cut(s)	914
Eco57I	CTGAAG	1 cut(s)	879
Eco81I	CCTNAGG	1 cut(s)	282
Eco88I	CYCGRG	1 cut(s)	83
EcoICRI	GAGCTC	1 cut(s)	914
EcoRI	GAATTC	1 cut(s)	78
EcoRII	CCWGG	3 cut(s)	207, 382, 566
EcoT38I	GRGCYC	1 cut(s)	916
Esp3I	CGTCTC	2 cut(s)	685, 719
FaeI	CATG	5 cut(s)	187, 227, 339, 457, 788
FatI	CATG	5 cut(s)	183, 223, 335, 453, 784
FbaI	TGATCA	1 cut(s)	415
FblI	GTMKAC	2 cut(s)	427, 774
Fnu4HI	GCNGC	3 cut(s)	192, 605, 642
FokI	GGATG	2 cut(s)	470, 824
FriOI	GRGCYC	1 cut(s)	916
Fsp4HI	GCNGC	3 cut(s)	192, 605, 642
FspBI	CTAG	3 cut(s)	54, 543, 887
GluI	GCNGC	3 cut(s)	192, 605, 642
GsaI	CCCAGC	1 cut(s)	395
GsuI	CTGGAG	2 cut(s)	201, 290
HaeIII	GGCC	1 cut(s)	437
HapII	CCGG	3 cut(s)	179, 250, 720
Hin1II	CATG	5 cut(s)	187, 227, 339, 457, 788
HindIII	AAGCTT	4 cut(s)	228, 296, 581, 593
HinfI	GANTC	3 cut(s)	214, 244, 277
HpaII	CCGG	3 cut(s)	179, 250, 720
HphI	GGTGA	1 cut(s)	373
Hpy166II	GTNNAC	4 cut(s)	323, 428, 449, 775
Hpy188I	TCNGA	4 cut(s)	65, 160, 705, 859
Hpy188III	TCNNGA	7 cut(s)	10, 83, 179, 281, 353, 488, 922
Hpy8I	GTNNAC	4 cut(s)	323, 428, 449, 775
HpyAV	CCTTC	3 cut(s)	68, 401, 677
HpyCH4III	ACNGT	4 cut(s)	305, 730, 815, 824
HpyCH4V	TGCA	6 cut(s)	108, 323, 532, 539, 634, 851
HpyF10VI	GCNNNNNNNGC	3 cut(s)	388, 601, 695
HpyF3I	CTNAG	7 cut(s)	58, 195, 282, 476, 600, 614, 661
Hsp92II	CATG	5 cut(s)	187, 227, 339, 457, 788
Kpn2I	TCCGGA	1 cut(s)	178
KroI	GCCGGC	1 cut(s)	719
KroNI	GCCGGC	1 cut(s)	721
Ksp22I	TGATCA	1 cut(s)	415
Kzo9I	GATC	3 cut(s)	415, 586, 705
Lsp1109I	GCAGC	3 cut(s)	178, 616, 653
LweI	GCATC	1 cut(s)	754
MaeI	CTAG	3 cut(s)	54, 543, 887
MaeIII	GTNAC	3 cut(s)	43, 620, 709
MalI	GATC	3 cut(s)	417, 588, 707
MboI	GATC	3 cut(s)	415, 586, 705
MboII	GAAGA	1 cut(s)	799
MfeI	CAATTG	1 cut(s)	24
MhlI	GDGCHC	3 cut(s)	325, 574, 916
MluCI	AATT	4 cut(s)	24, 78, 162, 917
MlyI	GAGTC	1 cut(s)	208
MnlI	CCTC	5 cut(s)	13, 265, 277, 357, 587
MroI	TCCGGA	1 cut(s)	178
MroNI	GCCGGC	1 cut(s)	719
MroXI	GAANNNNTTC	1 cut(s)	78
MseI	TTAA	3 cut(s)	257, 300, 465
MslI	CAYNNNNRTG	3 cut(s)	354, 456, 789
MspI	CCGG	3 cut(s)	179, 250, 720
MspR9I	CCNGG	4 cut(s)	209, 250, 384, 568
MunI	CAATTG	1 cut(s)	24
MvaI	CCWGG	3 cut(s)	209, 384, 568
MwoI	GCNNNNNNNGC	3 cut(s)	388, 601, 695
NaeI	GCCGGC	1 cut(s)	721
NciI	CCSGG	1 cut(s)	250
NdeII	GATC	3 cut(s)	415, 586, 705
NgoMIV	GCCGGC	1 cut(s)	719
NheI	GCTAGC	1 cut(s)	53
NlaIII	CATG	5 cut(s)	187, 227, 339, 457, 788
NmeAIII	GCCGAG	1 cut(s)	617
NmuCI	GTSAC	2 cut(s)	43, 620
NspI	RCATGY	1 cut(s)	339
PaeR7I	CTCGAG	1 cut(s)	83
PdiI	GCCGGC	1 cut(s)	721
PdmI	GAANNNNTTC	1 cut(s)	78
PfeI	GAWTC	2 cut(s)	244, 277
PflFI	GACNNNGTC	1 cut(s)	41
PkrI	GCNGC	3 cut(s)	193, 606, 643
PleI	GAGTC	1 cut(s)	208
PpsI	GAGTC	1 cut(s)	208
PshAI	GACNNNNGTC	2 cut(s)	218, 785
PsiI	TTATAA	1 cut(s)	828
Psp124BI	GAGCTC	1 cut(s)	916
Psp6I	CCWGG	3 cut(s)	207, 382, 566
PspFI	CCCAGC	1 cut(s)	391
PspGI	CCWGG	3 cut(s)	207, 382, 566
PstNI	CAGNNNCTG	1 cut(s)	857
PsyI	GACNNNGTC	1 cut(s)	41
RsaI	GTAC	1 cut(s)	884
RsaNI	GTAC	1 cut(s)	883
RseI	CAYNNNNRTG	3 cut(s)	354, 456, 789
SacI	GAGCTC	1 cut(s)	916
SaqAI	TTAA	3 cut(s)	257, 300, 465
SatI	GCNGC	3 cut(s)	192, 605, 642
Sau3AI	GATC	3 cut(s)	415, 586, 705
SchI	GAGTC	1 cut(s)	208
ScrFI	CCNGG	4 cut(s)	209, 250, 384, 568
SduI	GDGCHC	3 cut(s)	325, 574, 916
SfaNI	GCATC	1 cut(s)	754
SfcI	CTRYAG	1 cut(s)	814
Sfr274I	CTCGAG	1 cut(s)	83
SlaI	CTCGAG	1 cut(s)	83
SmiMI	CAYNNNNRTG	3 cut(s)	354, 456, 789
SmlI	CTYRAG	2 cut(s)	83, 578
SmoI	CTYRAG	2 cut(s)	83, 578
Sse9I	AATT	4 cut(s)	24, 78, 162, 917
SspMI	CTAG	3 cut(s)	54, 543, 887
SstI	GAGCTC	1 cut(s)	916
StyD4I	CCNGG	4 cut(s)	207, 248, 382, 566
TaaI	ACNGT	4 cut(s)	305, 730, 815, 824
TaqI	TCGA	4 cut(s)	84, 235, 810, 923
TasI	AATT	4 cut(s)	24, 78, 162, 917
TfiI	GAWTC	2 cut(s)	244, 277
Tru1I	TTAA	3 cut(s)	257, 300, 465
Tru9I	TTAA	3 cut(s)	257, 300, 465
TscAI	CASTG	2 cut(s)	325, 622
TseFI	GTSAC	2 cut(s)	43, 620
TseI	GCWGC	3 cut(s)	191, 604, 641
Tsp45I	GTSAC	2 cut(s)	43, 620
TspDTI	ATGAA	2 cut(s)	87, 240
TspRI	CASTG	2 cut(s)	325, 622
Tth111I	GACNNNGTC	1 cut(s)	41
VneI	GTGCAC	1 cut(s)	321
XapI	RAATTY	1 cut(s)	78
XceI	RCATGY	1 cut(s)	339
XhoI	CTCGAG	1 cut(s)	83
XmiI	GTMKAC	2 cut(s)	427, 774
XmnI	GAANNNNTTC	1 cut(s)	78
XspI	CTAG	3 cut(s)	54, 543, 887

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.