RchiOBHm_Chr2g0090201

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0001176
Physical Location & Seq
Reverse (-)
4123264 .. 4128611
5348 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ46545

Sequence Viewer

Length: 303 bp
ATGCAATTGAGAAAAATGCTACTAAATTCTCCAGTCCAGCATGCCTTCCTTACAAGAATGTCTGCTGACCACCCGAGGTGGATATCCAACTGGGGGATTAACAGCGTGCAATACAGTTGGGAAGTAAATCTGTTTTACTGGCACATGCCGTGCACGTGCAATCGTTTAGATATCTGGGAAGTCGTCCTCTGCTTGAACTTGAAGACATCAGATCTGAAGTGTGGTGATTTTCGGAGCAGTACATTTCCCACAAGTCGCCGTAGATCGGCAAACAGCGGCCCTCAAATTCAATCCGATAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

100

Amino Acids

11.71

Weight (kDa)

9.16

Isoelectric Point (pI)

71.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 276
AcsI RAATTY 2 cut(s) 25, 285
AcuI CTGAAG 1 cut(s) 236
AcvI CACGTG 1 cut(s) 156
AfaI GTAC 1 cut(s) 241
AfiI CCNNNNNNNGG 2 cut(s) 93, 265
AgsI TTSAA 3 cut(s) 196, 202, 290
Alw21I GWGCWC 1 cut(s) 155
Alw44I GTGCAC 1 cut(s) 151
Ama87I CYCGRG 1 cut(s) 73
AoxI GGCC 1 cut(s) 277
ApaLI GTGCAC 1 cut(s) 151
ApoI RAATTY 2 cut(s) 25, 285
AspS9I GGNCC 1 cut(s) 278
AsuHPI GGTGA 1 cut(s) 236
AvaI CYCGRG 1 cut(s) 73
BaeGI GKGCMC 1 cut(s) 155
BbrPI CACGTG 1 cut(s) 156
BbsI GAAGAC 1 cut(s) 209
Bbv12I GWGCWC 1 cut(s) 155
BceAI ACGGC 2 cut(s) 133, 243
BglII AGATCT 1 cut(s) 211
BisI GCNGC 1 cut(s) 277
BlsI GCNGC 1 cut(s) 278
BmeT110I CYCGRG 1 cut(s) 73
BmgT120I GGNCC 1 cut(s) 278
BmrI ACTGGG 1 cut(s) 100
BmuI ACTGGG 1 cut(s) 100
BpiI GAAGAC 1 cut(s) 209
BpmI CTGGAG 1 cut(s) 15
BsaAI YACGTR 1 cut(s) 156
BsaJI CCNNGG 1 cut(s) 74
Bsc4I CCNNNNNNNGG 2 cut(s) 93, 265
Bse1I ACTGG 3 cut(s) 32, 95, 143
BseDI CCNNGG 1 cut(s) 74
BseLI CCNNNNNNNGG 2 cut(s) 93, 265
BseNI ACTGG 3 cut(s) 32, 95, 143
BseSI GKGCMC 1 cut(s) 155
BshFI GGCC 1 cut(s) 279
BsiHKAI GWGCWC 1 cut(s) 155
BsiHKCI CYCGRG 1 cut(s) 73
BslI CCNNNNNNNGG 2 cut(s) 93, 265
BsnI GGCC 1 cut(s) 279
BsoBI CYCGRG 1 cut(s) 73
Bsp1286I GDGCHC 1 cut(s) 155
Bsp143I GATC 2 cut(s) 211, 263
BspACI CCGC 1 cut(s) 276
BspANI GGCC 1 cut(s) 279
BsrI ACTGG 3 cut(s) 32, 95, 143
BssECI CCNNGG 1 cut(s) 74
BssMI GATC 2 cut(s) 211, 263
Bst4CI ACNGT 1 cut(s) 116
BstBAI YACGTR 1 cut(s) 156
BstC8I GCNNGC 2 cut(s) 42, 107
BstKTI GATC 2 cut(s) 214, 266
BstMBI GATC 2 cut(s) 211, 263
BstNSI RCATGY 2 cut(s) 44, 148
BstSLI GKGCMC 1 cut(s) 155
BstV2I GAAGAC 1 cut(s) 209
BstX2I RGATCY 1 cut(s) 211
BstYI RGATCY 1 cut(s) 211
BsuRI GGCC 1 cut(s) 279
Cac8I GCNNGC 2 cut(s) 42, 107
Cfr13I GGNCC 1 cut(s) 278
Csp6I GTAC 1 cut(s) 240
CviAII CATG 2 cut(s) 41, 145
CviJI RGCY 1 cut(s) 279
CviKI_1 RGCY 1 cut(s) 279
CviQI GTAC 1 cut(s) 240
DpnI GATC 2 cut(s) 213, 265
DpnII GATC 2 cut(s) 211, 263
Eco32I GATATC 2 cut(s) 84, 172
Eco57I CTGAAG 1 cut(s) 236
Eco72I CACGTG 1 cut(s) 156
Eco88I CYCGRG 1 cut(s) 73
EcoRV GATATC 2 cut(s) 84, 172
FaeI CATG 2 cut(s) 44, 148
FaiI YATR 2 cut(s) 42, 146
FatI CATG 2 cut(s) 40, 144
Fnu4HI GCNGC 1 cut(s) 277
Fsp4HI GCNGC 1 cut(s) 277
GluI GCNGC 1 cut(s) 277
GsuI CTGGAG 1 cut(s) 15
HaeIII GGCC 1 cut(s) 279
Hin1II CATG 2 cut(s) 44, 148
HphI GGTGA 1 cut(s) 236
Hpy166II GTNNAC 1 cut(s) 153
Hpy188I TCNGA 4 cut(s) 211, 216, 234, 295
Hpy8I GTNNAC 1 cut(s) 153
HpyAV CCTTC 1 cut(s) 55
HpyCH4III ACNGT 1 cut(s) 116
HpyCH4IV ACGT 1 cut(s) 155
HpyCH4V TGCA 4 cut(s) 4, 109, 153, 159
HpySE526I ACGT 1 cut(s) 155
Hsp92II CATG 2 cut(s) 44, 148
Kzo9I GATC 2 cut(s) 211, 263
LmnI GCTCC 1 cut(s) 234
LpnPI CCDG 5 cut(s) 45, 50, 76, 124, 160
MaeII ACGT 1 cut(s) 155
MalI GATC 2 cut(s) 213, 265
MboI GATC 2 cut(s) 211, 263
MboII GAAGA 1 cut(s) 214
MfeI CAATTG 1 cut(s) 5
MflI RGATCY 1 cut(s) 211
MhlI GDGCHC 1 cut(s) 155
MluCI AATT 3 cut(s) 5, 25, 285
MmeI TCCRAC 1 cut(s) 111
MnlI CCTC 3 cut(s) 69, 197, 291
MseI TTAA 1 cut(s) 99
MspA1I CMGCKG 1 cut(s) 276
MunI CAATTG 1 cut(s) 5
NdeII GATC 2 cut(s) 211, 263
NlaIII CATG 2 cut(s) 44, 148
NspI RCATGY 2 cut(s) 44, 148
PaeI GCATGC 1 cut(s) 44
PkrI GCNGC 1 cut(s) 278
PmaCI CACGTG 1 cut(s) 156
PmlI CACGTG 1 cut(s) 156
Ppu21I YACGTR 1 cut(s) 156
PspCI CACGTG 1 cut(s) 156
PspPI GGNCC 1 cut(s) 278
PsuI RGATCY 1 cut(s) 211
RsaI GTAC 1 cut(s) 241
RsaNI GTAC 1 cut(s) 240
SaqAI TTAA 1 cut(s) 99
SatI GCNGC 1 cut(s) 277
Sau3AI GATC 2 cut(s) 211, 263
Sau96I GGNCC 1 cut(s) 278
SduI GDGCHC 1 cut(s) 155
SetI ASST 2 cut(s) 80, 158
SphI GCATGC 1 cut(s) 44
Sse9I AATT 3 cut(s) 5, 25, 285
SsiI CCGC 1 cut(s) 276
TaaI ACNGT 1 cut(s) 116
TaiI ACGT 1 cut(s) 158
TasI AATT 3 cut(s) 5, 25, 285
TatI WGTACW 1 cut(s) 239
TauI GCSGC 1 cut(s) 279
Tru1I TTAA 1 cut(s) 99
Tru9I TTAA 1 cut(s) 99
VneI GTGCAC 1 cut(s) 151
XapI RAATTY 2 cut(s) 25, 285
XceI RCATGY 2 cut(s) 44, 148
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.