RchiOBHm_Chr1g0322971

Protein of unknown function, DUF547

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0001176
Physical Location & Seq
Forward (+)
10555106 .. 10559019
3914 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ55293

Sequence Viewer

Length: 339 bp
ATGGCTCTGGACCTCTGGATTTGCGAAAGCTCCTTCGTACCTGCGTTAGCTTCTGGTCTTCTAGTGCTGTTTCTGCATTTGGAGGATTTGCTTTATGTGGTTAAAGCCAAACCCCATGATCGCAGGATGATGTGTGACTCACCGATTGTGCAAACTAAGTTGAGCCAAAATGATTCTCTCTGTAAATATTCTCATTCTAGCATCTCATGTGATTCTGAATTTCAGTCAGAGGTTGTGAAAGATGACTCGTTGTCAAAGGTAAGTACTAGTGCACATGTTCCAGGCAAATGCTTTCAAATTTCTAAAATGTTCTGTTGGGAACCACGTGAATTCGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF547 Lzipper-MIP1

Protein Analysis

112

Amino Acids

12.68

Weight (kDa)

5.47

Isoelectric Point (pI)

57.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 49
AcsI RAATTY 3 cut(s) 218, 297, 329
AcvI CACGTG 1 cut(s) 326
AfaI GTAC 2 cut(s) 39, 265
AflIII ACRYGT 1 cut(s) 274
AgsI TTSAA 1 cut(s) 296
AhdI GACNNNNNGTC 1 cut(s) 250
AhlI ACTAGT 1 cut(s) 266
AjnI CCWGG 1 cut(s) 280
AluBI AGCT 2 cut(s) 30, 50
AluI AGCT 2 cut(s) 30, 50
Alw21I GWGCWC 1 cut(s) 274
Alw44I GTGCAC 1 cut(s) 270
ApaLI GTGCAC 1 cut(s) 270
ApoI RAATTY 3 cut(s) 218, 297, 329
AspS9I GGNCC 1 cut(s) 10
AsuHPI GGTGA 1 cut(s) 132
AvaII GGWCC 1 cut(s) 10
BaeGI GKGCMC 1 cut(s) 274
BbrPI CACGTG 1 cut(s) 326
BbsI GAAGAC 1 cut(s) 50
Bbv12I GWGCWC 1 cut(s) 274
BciT130I CCWGG 1 cut(s) 282
BcuI ACTAGT 1 cut(s) 266
BfaI CTAG 3 cut(s) 62, 198, 267
BfuAI ACCTGC 1 cut(s) 49
BmcAI AGTACT 1 cut(s) 265
Bme1390I CCNGG 1 cut(s) 282
Bme18I GGWCC 1 cut(s) 10
BmeRI GACNNNNNGTC 1 cut(s) 250
BmgT120I GGNCC 1 cut(s) 10
BmiI GGNNCC 1 cut(s) 321
BmrFI CCNGG 1 cut(s) 282
BmsI GCATC 1 cut(s) 210
BpiI GAAGAC 1 cut(s) 50
BsaAI YACGTR 1 cut(s) 326
BseBI CCWGG 1 cut(s) 282
BseGI GGATG 1 cut(s) 132
BseSI GKGCMC 1 cut(s) 274
BsiHKAI GWGCWC 1 cut(s) 274
Bsp1286I GDGCHC 1 cut(s) 274
Bsp143I GATC 1 cut(s) 118
BspLI GGNNCC 1 cut(s) 321
BspMI ACCTGC 1 cut(s) 49
BssMI GATC 1 cut(s) 118
Bst2UI CCWGG 1 cut(s) 282
BstBAI YACGTR 1 cut(s) 326
BstDEI CTNAG 1 cut(s) 156
BstF5I GGATG 1 cut(s) 132
BstKTI GATC 1 cut(s) 121
BstMBI GATC 1 cut(s) 118
BstMWI GCNNNNNNNGC 1 cut(s) 73
BstNI CCWGG 1 cut(s) 282
BstNSI RCATGY 1 cut(s) 278
BstSCI CCNGG 1 cut(s) 280
BstSLI GKGCMC 1 cut(s) 274
BstV2I GAAGAC 1 cut(s) 50
BtsCI GGATG 1 cut(s) 132
BveI ACCTGC 1 cut(s) 49
Cfr13I GGNCC 1 cut(s) 10
Csp6I GTAC 2 cut(s) 38, 264
CviAII CATG 3 cut(s) 116, 207, 275
CviJI RGCY 5 cut(s) 5, 30, 50, 107, 165
CviKI_1 RGCY 5 cut(s) 5, 30, 50, 107, 165
CviQI GTAC 2 cut(s) 38, 264
DdeI CTNAG 1 cut(s) 156
DpnI GATC 1 cut(s) 120
DpnII GATC 1 cut(s) 118
DriI GACNNNNNGTC 1 cut(s) 250
Eam1105I GACNNNNNGTC 1 cut(s) 250
Eco47I GGWCC 1 cut(s) 10
Eco72I CACGTG 1 cut(s) 326
EcoRI GAATTC 1 cut(s) 329
EcoRII CCWGG 1 cut(s) 280
FaeI CATG 3 cut(s) 119, 210, 278
FaiI YATR 4 cut(s) 96, 117, 208, 276
FatI CATG 3 cut(s) 115, 206, 274
FokI GGATG 1 cut(s) 139
FspBI CTAG 3 cut(s) 62, 198, 267
Hin1II CATG 3 cut(s) 119, 210, 278
HinfI GANTC 4 cut(s) 137, 173, 212, 245
HphI GGTGA 1 cut(s) 132
Hpy166II GTNNAC 1 cut(s) 272
Hpy188I TCNGA 2 cut(s) 217, 229
Hpy188III TCNNGA 2 cut(s) 8, 16
Hpy8I GTNNAC 1 cut(s) 272
HpyAV CCTTC 1 cut(s) 43
HpyCH4IV ACGT 1 cut(s) 325
HpyCH4V TGCA 3 cut(s) 76, 151, 272
HpyF10VI GCNNNNNNNGC 1 cut(s) 73
HpyF3I CTNAG 1 cut(s) 156
HpySE526I ACGT 1 cut(s) 325
Hsp92II CATG 3 cut(s) 119, 210, 278
Kzo9I GATC 1 cut(s) 118
LmnI GCTCC 1 cut(s) 35
LpnPI CCDG 5 cut(s) 39, 54, 109, 267, 294
LweI GCATC 1 cut(s) 210
MaeI CTAG 3 cut(s) 62, 198, 267
MaeII ACGT 1 cut(s) 325
MaeIII GTNAC 1 cut(s) 134
MalI GATC 1 cut(s) 120
MboI GATC 1 cut(s) 118
MboII GAAGA 1 cut(s) 50
MhlI GDGCHC 1 cut(s) 274
MluCI AATT 3 cut(s) 218, 297, 329
MlyI GAGTC 2 cut(s) 131, 239
MnlI CCTC 3 cut(s) 23, 76, 223
MseI TTAA 1 cut(s) 102
MspR9I CCNGG 1 cut(s) 282
MvaI CCWGG 1 cut(s) 282
MwoI GCNNNNNNNGC 1 cut(s) 73
NdeII GATC 1 cut(s) 118
NlaIII CATG 3 cut(s) 119, 210, 278
NlaIV GGNNCC 1 cut(s) 321
NmuCI GTSAC 1 cut(s) 134
NspI RCATGY 1 cut(s) 278
PciI ACATGT 1 cut(s) 274
PfeI GAWTC 2 cut(s) 173, 212
PleI GAGTC 2 cut(s) 131, 239
PmaCI CACGTG 1 cut(s) 326
PmlI CACGTG 1 cut(s) 326
PpsI GAGTC 2 cut(s) 131, 239
Ppu21I YACGTR 1 cut(s) 326
PscI ACATGT 1 cut(s) 274
Psp6I CCWGG 1 cut(s) 280
PspCI CACGTG 1 cut(s) 326
PspGI CCWGG 1 cut(s) 280
PspN4I GGNNCC 1 cut(s) 321
PspPI GGNCC 1 cut(s) 10
RsaI GTAC 2 cut(s) 39, 265
RsaNI GTAC 2 cut(s) 38, 264
SaqAI TTAA 1 cut(s) 102
Sau3AI GATC 1 cut(s) 118
Sau96I GGNCC 1 cut(s) 10
ScaI AGTACT 1 cut(s) 265
SchI GAGTC 2 cut(s) 131, 239
ScrFI CCNGG 1 cut(s) 282
SduI GDGCHC 1 cut(s) 274
SetI ASST 7 cut(s) 15, 32, 43, 52, 234, 261, 328
SfaNI GCATC 1 cut(s) 210
SinI GGWCC 1 cut(s) 10
SpeI ACTAGT 1 cut(s) 266
Sse9I AATT 3 cut(s) 218, 297, 329
SspI AATATT 1 cut(s) 188
SspMI CTAG 3 cut(s) 62, 198, 267
StyD4I CCNGG 1 cut(s) 280
TaiI ACGT 1 cut(s) 328
TaqI TCGA 1 cut(s) 333
TasI AATT 3 cut(s) 218, 297, 329
TatI WGTACW 1 cut(s) 263
TfiI GAWTC 2 cut(s) 173, 212
Tru1I TTAA 1 cut(s) 102
Tru9I TTAA 1 cut(s) 102
TseFI GTSAC 1 cut(s) 134
Tsp45I GTSAC 1 cut(s) 134
VneI GTGCAC 1 cut(s) 270
VpaK11BI GGWCC 1 cut(s) 10
XapI RAATTY 3 cut(s) 218, 297, 329
XceI RCATGY 1 cut(s) 278
XspI CTAG 3 cut(s) 62, 198, 267
ZrmI AGTACT 1 cut(s) 265
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.