Rh1AG015100

Protein of unknown function, DUF547

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0001176
Physical Location & Seq
Forward (+)
2296818 .. 2305520
8703 bp
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UTR
Exon/CDS
Intron
Rh1AG015100.1

Sequence Viewer

Length: 699 bp
ATGACAGGTTCTGTTCAGGATGAAGTACCTGTATTAATGAGTGGAGCAGGACATGATGCAATGGCTCTGTCTCATTTAACTAAGGTGGGTATGCTTTTTGTCCGTTGTCGAGGAGGCATAAGTCACTTCCCTGAAGAACATGTATTGGATGATGATGATGTTTGGGCATCTGGATTTGCGAAAGCTTGTTTGTACCTGCGTATAGCTTGTGGTCTTCTAGTACCAGAAGCCAAGCTGTTTCTGCATTTGGAGGATTTGCTTTATGTGGTTAAAGCCAAACCCCATGATCGCAGGATGATGTGTGACTCACCGATTGTGCAAACTAAGTTGAGCCAAAGTGATTCTCTCTATAAATATTCTCATTCTAGCATCTCATGTGATTCTGAATTTCAGTCAGAGGTTGTGAAAGATGATTCGTTGTCAAAGGCTCAAGAGCTCCTAAGCATTATTGCTGCAGTGGAGGTGACAGTTTCAGAACTAGAACAGGAGTTGGTTGCATTGCATTTCCAACTAAGTCAAGAAAGAAATGAAAGAAGGCTGTCAGAATACCGTCTGAGGCATCCATCTCCTCAGTCAATGTCCCCTCGCCTGTCCAGCATTATGAAACTGCCGATTTCATCTTCCAGAATGTCTGCTGACCACCCGAGGTGGGTATCCAACTGGGGGATTAACAGCACGTGCAATACAGTTGGGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF547 Lzipper-MIP1

Protein Analysis

232

Amino Acids

25.93

Weight (kDa)

6.05

Isoelectric Point (pI)

60.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lzipper-MIP1 PF14389 141 - 174 2.3e-06 Leucine-zipper of ternary complex factor MIP1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 204
AcsI RAATTY 1 cut(s) 386
AcuI CTGAAG 1 cut(s) 153
AcvI CACGTG 1 cut(s) 678
AfaI GTAC 3 cut(s) 27, 194, 222
AfiI CCNNNNNNNGG 2 cut(s) 649, 663
AflIII ACRYGT 1 cut(s) 139
AluBI AGCT 4 cut(s) 185, 206, 235, 436
AluI AGCT 4 cut(s) 185, 206, 235, 436
Alw21I GWGCWC 1 cut(s) 438
Alw26I GTCTC 1 cut(s) 75
AlwNI CAGNNNCTG 1 cut(s) 11
Ama87I CYCGRG 1 cut(s) 643
ApeKI GCWGC 1 cut(s) 452
ApoI RAATTY 1 cut(s) 386
AseI ATTAAT 1 cut(s) 35
AsuHPI GGTGA 2 cut(s) 300, 475
AvaI CYCGRG 1 cut(s) 643
BanII GRGCYC 1 cut(s) 438
BbrPI CACGTG 1 cut(s) 678
BbsI GAAGAC 1 cut(s) 206
Bbv12I GWGCWC 1 cut(s) 438
BbvI GCAGC 1 cut(s) 439
BccI CCATC 1 cut(s) 571
BciVI GTATCC 1 cut(s) 664
BcoDI GTCTC 1 cut(s) 75
BfaI CTAG 3 cut(s) 218, 366, 479
BfmI CTRYAG 1 cut(s) 453
BfuAI ACCTGC 1 cut(s) 204
BfuI GTATCC 1 cut(s) 664
BisI GCNGC 1 cut(s) 453
BlsI GCNGC 1 cut(s) 454
BmeT110I CYCGRG 1 cut(s) 643
BmrI ACTGGG 1 cut(s) 670
BmsI GCATC 4 cut(s) 46, 176, 378, 568
BmuI ACTGGG 1 cut(s) 670
BpiI GAAGAC 1 cut(s) 206
Bpu10I CCTNAGC 1 cut(s) 440
BpuEI CTTGAG 1 cut(s) 414
BsaAI YACGTR 1 cut(s) 678
BsaJI CCNNGG 1 cut(s) 644
Bsc4I CCNNNNNNNGG 2 cut(s) 649, 663
Bse1I ACTGG 1 cut(s) 665
Bse3DI GCAATG 2 cut(s) 66, 497
BseDI CCNNGG 1 cut(s) 644
BseGI GGATG 4 cut(s) 25, 154, 300, 559
BseLI CCNNNNNNNGG 2 cut(s) 649, 663
BseMI GCAATG 2 cut(s) 66, 497
BseMII CTCAG 2 cut(s) 545, 584
BseNI ACTGG 1 cut(s) 665
BseRI GAGGAG 2 cut(s) 126, 558
BseXI GCAGC 1 cut(s) 439
BsiHKAI GWGCWC 1 cut(s) 438
BsiHKCI CYCGRG 1 cut(s) 643
BslFI GGGAC 1 cut(s) 565
BslI CCNNNNNNNGG 2 cut(s) 649, 663
BsmAI GTCTC 1 cut(s) 75
BsmFI GGGAC 1 cut(s) 565
BsoBI CYCGRG 1 cut(s) 643
Bsp1286I GDGCHC 1 cut(s) 438
Bsp143I GATC 1 cut(s) 286
BspCNI CTCAG 2 cut(s) 546, 583
BspMAI CTGCAG 1 cut(s) 457
BspMI ACCTGC 1 cut(s) 204
BsrDI GCAATG 2 cut(s) 66, 497
BsrI ACTGG 1 cut(s) 665
BssECI CCNNGG 1 cut(s) 644
BssMI GATC 1 cut(s) 286
Bst4CI ACNGT 3 cut(s) 469, 551, 688
BstBAI YACGTR 1 cut(s) 678
BstDEI CTNAG 6 cut(s) 81, 324, 440, 512, 554, 570
BstF5I GGATG 4 cut(s) 25, 154, 300, 559
BstKTI GATC 1 cut(s) 289
BstMAI GTCTC 1 cut(s) 75
BstMBI GATC 1 cut(s) 286
BstMWI GCNNNNNNNGC 2 cut(s) 241, 594
BstNSI RCATGY 1 cut(s) 143
BstSFI CTRYAG 1 cut(s) 453
BstV1I GCAGC 1 cut(s) 439
BstV2I GAAGAC 1 cut(s) 206
BsuI GTATCC 1 cut(s) 664
BtsCI GGATG 4 cut(s) 25, 154, 300, 559
BtsI GCAGTG 1 cut(s) 462
BtsIMutI CAGTG 1 cut(s) 462
BveI ACCTGC 1 cut(s) 204
CaiI CAGNNNCTG 1 cut(s) 11
Csp6I GTAC 3 cut(s) 26, 193, 221
CviAII CATG 4 cut(s) 53, 140, 284, 375
CviQI GTAC 3 cut(s) 26, 193, 221
DdeI CTNAG 6 cut(s) 81, 324, 440, 512, 554, 570
DpnI GATC 1 cut(s) 288
DpnII GATC 1 cut(s) 286
Ecl136II GAGCTC 1 cut(s) 436
Eco24I GRGCYC 1 cut(s) 438
Eco53kI GAGCTC 1 cut(s) 436
Eco57I CTGAAG 1 cut(s) 153
Eco72I CACGTG 1 cut(s) 678
Eco88I CYCGRG 1 cut(s) 643
EcoICRI GAGCTC 1 cut(s) 436
EcoT38I GRGCYC 1 cut(s) 438
FaeI CATG 4 cut(s) 56, 143, 287, 378
FaqI GGGAC 1 cut(s) 565
FatI CATG 4 cut(s) 52, 139, 283, 374
Fnu4HI GCNGC 1 cut(s) 453
FokI GGATG 4 cut(s) 32, 161, 307, 546
FriOI GRGCYC 1 cut(s) 438
Fsp4HI GCNGC 1 cut(s) 453
FspBI CTAG 3 cut(s) 218, 366, 479
GluI GCNGC 1 cut(s) 453
Hin1II CATG 4 cut(s) 56, 143, 287, 378
HindIII AAGCTT 1 cut(s) 183
HinfI GANTC 4 cut(s) 305, 341, 380, 413
HphI GGTGA 2 cut(s) 300, 475
Hpy188I TCNGA 5 cut(s) 385, 397, 475, 544, 555
Hpy188III TCNNGA 5 cut(s) 17, 171, 431, 518, 624
HpyAV CCTTC 1 cut(s) 528
HpyCH4III ACNGT 3 cut(s) 469, 551, 688
HpyCH4IV ACGT 1 cut(s) 677
HpyCH4V TGCA 7 cut(s) 59, 244, 319, 455, 497, 502, 681
HpyF10VI GCNNNNNNNGC 2 cut(s) 241, 594
HpyF3I CTNAG 6 cut(s) 81, 324, 440, 512, 554, 570
HpySE526I ACGT 1 cut(s) 677
Hsp92II CATG 4 cut(s) 56, 143, 287, 378
Kzo9I GATC 1 cut(s) 286
LmnI GCTCC 2 cut(s) 44, 441
Lsp1109I GCAGC 1 cut(s) 439
LweI GCATC 4 cut(s) 46, 176, 378, 568
MaeI CTAG 3 cut(s) 218, 366, 479
MaeII ACGT 1 cut(s) 677
MaeIII GTNAC 3 cut(s) 122, 302, 463
MalI GATC 1 cut(s) 288
MboI GATC 1 cut(s) 286
MboII GAAGA 3 cut(s) 146, 206, 612
MhlI GDGCHC 1 cut(s) 438
MluCI AATT 1 cut(s) 386
MlyI GAGTC 1 cut(s) 299
MmeI TCCRAC 2 cut(s) 532, 681
MnlI CCTC 9 cut(s) 104, 107, 244, 391, 454, 549, 579, 594, 639
MseI TTAA 4 cut(s) 35, 77, 270, 669
MwoI GCNNNNNNNGC 2 cut(s) 241, 594
NdeII GATC 1 cut(s) 286
NlaIII CATG 4 cut(s) 56, 143, 287, 378
NmuCI GTSAC 3 cut(s) 122, 302, 463
NspI RCATGY 1 cut(s) 143
PciI ACATGT 1 cut(s) 139
PfeI GAWTC 3 cut(s) 341, 380, 413
PkrI GCNGC 1 cut(s) 454
PleI GAGTC 1 cut(s) 299
PmaCI CACGTG 1 cut(s) 678
PmlI CACGTG 1 cut(s) 678
PpsI GAGTC 1 cut(s) 299
Ppu21I YACGTR 1 cut(s) 678
PscI ACATGT 1 cut(s) 139
PshBI ATTAAT 1 cut(s) 35
Psp124BI GAGCTC 1 cut(s) 438
PspCI CACGTG 1 cut(s) 678
PstI CTGCAG 1 cut(s) 457
PstNI CAGNNNCTG 1 cut(s) 11
RsaI GTAC 3 cut(s) 27, 194, 222
RsaNI GTAC 3 cut(s) 26, 193, 221
SacI GAGCTC 1 cut(s) 438
SaqAI TTAA 4 cut(s) 35, 77, 270, 669
SatI GCNGC 1 cut(s) 453
Sau3AI GATC 1 cut(s) 286
SchI GAGTC 1 cut(s) 299
SduI GDGCHC 1 cut(s) 438
SfaNI GCATC 4 cut(s) 46, 176, 378, 568
SfcI CTRYAG 1 cut(s) 453
SmlI CTYRAG 1 cut(s) 429
SmoI CTYRAG 1 cut(s) 429
Sse9I AATT 1 cut(s) 386
SspI AATATT 1 cut(s) 356
SspMI CTAG 3 cut(s) 218, 366, 479
SstI GAGCTC 1 cut(s) 438
TaaI ACNGT 3 cut(s) 469, 551, 688
TaiI ACGT 1 cut(s) 680
TaqI TCGA 1 cut(s) 109
TasI AATT 1 cut(s) 386
TfiI GAWTC 3 cut(s) 341, 380, 413
Tru1I TTAA 4 cut(s) 35, 77, 270, 669
Tru9I TTAA 4 cut(s) 35, 77, 270, 669
TscAI CASTG 1 cut(s) 462
TseFI GTSAC 3 cut(s) 122, 302, 463
TseI GCWGC 1 cut(s) 452
Tsp45I GTSAC 3 cut(s) 122, 302, 463
TspDTI ATGAA 4 cut(s) 36, 543, 606, 617
TspGWI ACGGA 1 cut(s) 92
TspRI CASTG 1 cut(s) 462
VspI ATTAAT 1 cut(s) 35
XapI RAATTY 1 cut(s) 386
XceI RCATGY 1 cut(s) 143
XspI CTAG 3 cut(s) 218, 366, 479
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.