Rorug02G0406600

Protein of unknown function, DUF547

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0001176
Physical Location & Seq
Forward (+)
51896143 .. 51898227
2085 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0406600.1

Sequence Viewer

Length: 1779 bp
ATGGCTTCGCAGCAAGACACTCAATCTCCGCCGCTGGTTCACGACTGCTTGAAACTATTGAAGTCCGAGACAGACGAGCAGCGCCTCGCCGGCCTCGACCTCCTCACCCAATTTCGCAAAGCCAACGACCTCTCCTCTCTCCTCACTATTCACCACGCCCTCGGTCCCCACTTTCTCGATCAACTCCTCCCCACCGCCACCGCCCGCCGCAACGACGCCGTTTTACTTCTCTCAATCACAGCCCTCGCCGCCTTCTGCCGCGTTCCCCAAATCGCCGCCGCAAACGACGTCGTCTCCAAGATTCCACTCGTACTCAAACTTGTCTCAACATCTCAAGAATCAGACCCAATTCTCCAAGAATGCTATGAGTTTCTGTATTTGGTGTCTACAGCTTCCGATAAGGGAGCCACCACATTGTTCAATTCTGGGGGCTTCATCAAAATGCTGGCTTCTCATATAGCAGTTTTACCCTACGGTGTTGCTATTAAGCTTGTGCAAAATTTACTAAGAAAAGTGGTGTTTCTTGATATATATGTGGCAGAGCTCTCAGTGATTGTGGCTACATTGGCAAGGCAATTTGCTATGTTGCACAATGCTGCGAAATTCGATGCTCTGCATCTACTTTCGGGCATTCTCTCATCAACACATTTGAATTCAGCGCGGCTTCGGGACTCGCTTCGGCTGCTTTCGGATAGAAACTGGCCAAATTACATGCGTGATGGTATTGTGGCTATTTTGCAAAACCATGTTGGAGCCACTGAGAAGCAGGAGGCGCTTGTTCTGGCTGAGGCTATGGTGTCGATTTTCGGGGAGGGGTGGTTGATAGGGGAGATAGATAATGTAGGGGAACTTGATGGGAAGAAAGAGCCTATTCCGGCTGACAGGTGCTTACTGCTTGTTTTGGAGCAATCAAGAGTTGAGGTTGCTGTTCTGTTGAAAGCACTTGCCTATTTGAGAAATGAAGCAAGTAAGAACTCGAAATCTTCACCAACTAGTGAGACAGTTTGTTCAAAGAAAAGGAATGTGTCTCTGCTGTTTTCCTTGGTTGAAAAGATAATTAACTTGATGTCGAATGCTGTTGCTAGTGAGAATAAAGAGGAAGTACTTGTTGATGAAAATACTTGTGTGAAGATGATTGATGGCCTCAATGAGACGATTGGTGTGGTTCTGGAGTATTTACAGGATGCAAAGGAACATGGAGAGAGGAAGGGAAATGATCTTCTCGCTTCGGTGCGGATAATTGGGAGATATGTTGCAGAAACTCCCCTTGCATGTGAAGACAAGGTTGGAGAGCTTTTAGGGTATATGCTCTCGGTTGAGGGTGAAGATGAACCAAGAGGACCCTTCTACTCGGTGTGCTATTTGCTTCCAATGCTGTGCCAAATGACAGTAGAGATTGAAGGATGTAAAGCTTTGATTTCTTGTGGAGGTCATAACACTGTTGTTGACTGCCTTGTAAGATTGATTCGGCAACATAATCGTTATATGGGCGAGGATAATGGTTGCATCTATTTTGCATGGGGCACCATCTTGAATCTTCTTTCAAACAAAGAGCTAGTGCCAGTGCCATTGGATGACTTAACTGCTGTTAATCTATTGAAAGCATTGGCATGTTGGACAGAAAGCACTCATGATGACCCGTCAATTGTTATGATGGCTTCAAGAATTTGCGCATTGCTGTTGGATTTTACATCGCAGAAGGCTCTTCTTAAGAATCCTGACTTCGACAACAACTCTCTTGGTAGATTGTTTCGGCTGATTGCAAGAAGTTTGGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF547 Lzipper-MIP1

Protein Analysis

592

Amino Acids

65.13

Weight (kDa)

5.49

Isoelectric Point (pI)

39.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Neurochondrin PF05536 8 - 575 1.4e-97 Neurochondrin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 291
Acc16I TGCGCA 1 cut(s) 1672
AccB1I GGYRCC 1 cut(s) 1523
AccI GTMKAC 1 cut(s) 386
AccII CGCG 2 cut(s) 261, 661
AcoI YGGCCR 1 cut(s) 701
AcsI RAATTY 4 cut(s) 499, 602, 652, 1665
AcyI GRCGYC 2 cut(s) 216, 288
AfaI GTAC 2 cut(s) 312, 1104
AflII CTTAAG 1 cut(s) 1709
AhlI ACTAGT 1 cut(s) 992
AjuI GAANNNNNNNTTGG 2 cut(s) 1269, 1301
AluBI AGCT 6 cut(s) 392, 490, 544, 1294, 1412, 1555
AluI AGCT 6 cut(s) 392, 490, 544, 1294, 1412, 1555
Alw21I GWGCWC 1 cut(s) 546
Alw26I GTCTC 6 cut(s) 62, 298, 328, 992, 1032, 1145
AoxI GGCC 3 cut(s) 91, 701, 1141
ApeKI GCWGC 4 cut(s) 10, 79, 596, 682
ApoI RAATTY 4 cut(s) 499, 602, 652, 1665
AspLEI GCGC 4 cut(s) 84, 661, 775, 1673
AspS9I GGNCC 2 cut(s) 164, 1340
AsuHPI GGTGA 4 cut(s) 97, 143, 978, 1334
AvaII GGWCC 2 cut(s) 164, 1340
BaeGI GKGCMC 1 cut(s) 1526
BalI TGGCCA 1 cut(s) 703
BanI GGYRCC 1 cut(s) 1523
BanII GRGCYC 1 cut(s) 546
BbsI GAAGAC 1 cut(s) 1284
Bbv12I GWGCWC 1 cut(s) 546
BbvCI CCTCAGC 1 cut(s) 786
BbvI GCAGC 4 cut(s) 22, 91, 583, 669
BccI CCATC 5 cut(s) 713, 848, 1133, 1535, 1648
BceAI ACGGC 1 cut(s) 203
BcgI CGANNNNNNTGC 2 cut(s) 1460, 1494
BcoDI GTCTC 6 cut(s) 62, 298, 328, 992, 1032, 1145
BcuI ACTAGT 1 cut(s) 992
BfaI CTAG 3 cut(s) 993, 1083, 1556
BfmI CTRYAG 1 cut(s) 387
BfoI RGCGCY 2 cut(s) 85, 776
BfrI CTTAAG 1 cut(s) 1709
BglI GCCNNNNNGGC 1 cut(s) 90
BmcAI AGTACT 1 cut(s) 1104
Bme18I GGWCC 2 cut(s) 164, 1340
BmgT120I GGNCC 2 cut(s) 164, 1340
BmiI GGNNCC 5 cut(s) 166, 406, 754, 1342, 1525
BmsI GCATC 4 cut(s) 598, 625, 1174, 1515
BpiI GAAGAC 1 cut(s) 1284
BpmI CTGGAG 1 cut(s) 1190
Bpu10I CCTNAGC 1 cut(s) 786
BpuEI CTTGAG 1 cut(s) 318
BsaHI GRCGYC 2 cut(s) 216, 288
BsaJI CCNNGG 2 cut(s) 160, 1041
BsaXI ACNNNNNCTCC 8 cut(s) 10, 40, 116, 146, 278, 308, 803, 833
Bse118I RCCGGY 1 cut(s) 89
Bse1I ACTGG 2 cut(s) 704, 1562
Bse3DI GCAATG 1 cut(s) 1673
BseDI CCNNGG 2 cut(s) 160, 1041
BseGI GGATG 3 cut(s) 1189, 1409, 1579
BseMI GCAATG 1 cut(s) 1673
BseMII CTCAG 3 cut(s) 561, 750, 777
BseNI ACTGG 2 cut(s) 704, 1562
BseRI GAGGAG 4 cut(s) 92, 124, 131, 176
BseSI GKGCMC 1 cut(s) 1526
BseXI GCAGC 4 cut(s) 22, 91, 583, 669
Bsh1236I CGCG 2 cut(s) 261, 661
BshFI GGCC 3 cut(s) 93, 703, 1143
BshNI GGYRCC 1 cut(s) 1523
BsiHKAI GWGCWC 1 cut(s) 546
BsiSI CCGG 2 cut(s) 90, 875
BslFI GGGAC 2 cut(s) 150, 683
BsmAI GTCTC 6 cut(s) 62, 298, 328, 992, 1032, 1145
BsmBI CGTCTC 2 cut(s) 298, 1145
BsmFI GGGAC 2 cut(s) 150, 683
BsmI GAATGC 3 cut(s) 365, 630, 1078
BsnI GGCC 3 cut(s) 93, 703, 1143
Bsp1286I GDGCHC 2 cut(s) 546, 1526
Bsp143I GATC 2 cut(s) 178, 1216
BspANI GGCC 3 cut(s) 93, 703, 1143
BspCNI CTCAG 3 cut(s) 560, 751, 778
BspFNI CGCG 2 cut(s) 261, 661
BspHI TCATGA 1 cut(s) 1630
BspLI GGNNCC 5 cut(s) 166, 406, 754, 1342, 1525
BspQI GCTCTTC 1 cut(s) 1710
BspT107I GGYRCC 1 cut(s) 1523
BspTI CTTAAG 1 cut(s) 1709
BsrDI GCAATG 1 cut(s) 1673
BsrFI RCCGGY 1 cut(s) 89
BsrI ACTGG 2 cut(s) 704, 1562
BssAI RCCGGY 1 cut(s) 89
BssECI CCNNGG 2 cut(s) 160, 1041
BssMI GATC 2 cut(s) 178, 1216
BssNI GRCGYC 2 cut(s) 216, 288
BssT1I CCWWGG 1 cut(s) 1041
Bst4CI ACNGT 4 cut(s) 476, 1003, 1390, 1441
Bst6I CTCTTC 1 cut(s) 1710
BstACI GRCGYC 2 cut(s) 216, 288
BstAFI CTTAAG 1 cut(s) 1709
BstC8I GCNNGC 3 cut(s) 91, 205, 447
BstDEI CTNAG 4 cut(s) 506, 547, 759, 786
BstF5I GGATG 3 cut(s) 1189, 1409, 1579
BstFNI CGCG 2 cut(s) 261, 661
BstH2I RGCGCY 2 cut(s) 85, 776
BstHHI GCGC 4 cut(s) 84, 661, 775, 1673
BstKTI GATC 2 cut(s) 181, 1219
BstMAI GTCTC 6 cut(s) 62, 298, 328, 992, 1032, 1145
BstMBI GATC 2 cut(s) 178, 1216
BstMWI GCNNNNNNNGC 6 cut(s) 90, 248, 566, 682, 772, 1372
BstNSI RCATGY 3 cut(s) 715, 1275, 1614
BstSFI CTRYAG 1 cut(s) 387
BstSLI GKGCMC 1 cut(s) 1526
BstUI CGCG 2 cut(s) 261, 661
BstV1I GCAGC 4 cut(s) 22, 91, 583, 669
BstV2I GAAGAC 1 cut(s) 1284
BsuRI GGCC 3 cut(s) 93, 703, 1143
BtgZI GCGATG 1 cut(s) 1677
BtsCI GGATG 3 cut(s) 1189, 1409, 1579
BtsIMutI CAGTG 4 cut(s) 555, 756, 1437, 1569
Cac8I GCNNGC 3 cut(s) 91, 205, 447
CciI TCATGA 1 cut(s) 1630
CfoI GCGC 4 cut(s) 84, 661, 775, 1673
Cfr10I RCCGGY 1 cut(s) 89
Cfr13I GGNCC 2 cut(s) 164, 1340
CseI GACGC 1 cut(s) 224
Csp6I GTAC 2 cut(s) 311, 1103
CviAII CATG 7 cut(s) 712, 746, 1196, 1272, 1518, 1611, 1631
CviQI GTAC 2 cut(s) 311, 1103
DdeI CTNAG 4 cut(s) 506, 547, 759, 786
DpnI GATC 2 cut(s) 180, 1218
DpnII GATC 2 cut(s) 178, 1216
EaeI YGGCCR 1 cut(s) 701
Eam1104I CTCTTC 1 cut(s) 1710
EarI CTCTTC 1 cut(s) 1710
EciI GGCGGA 1 cut(s) 18
Ecl136II GAGCTC 1 cut(s) 544
Eco130I CCWWGG 1 cut(s) 1041
Eco24I GRGCYC 1 cut(s) 546
Eco47I GGWCC 2 cut(s) 164, 1340
Eco53kI GAGCTC 1 cut(s) 544
EcoICRI GAGCTC 1 cut(s) 544
EcoO109I RGGNCCY 1 cut(s) 1340
EcoRI GAATTC 1 cut(s) 652
EcoT14I CCWWGG 1 cut(s) 1041
EcoT38I GRGCYC 1 cut(s) 546
ErhI CCWWGG 1 cut(s) 1041
Esp3I CGTCTC 2 cut(s) 298, 1145
FaeI CATG 7 cut(s) 715, 749, 1199, 1275, 1521, 1614, 1634
FalI AAGNNNNNCTT 1 cut(s) 1759
FaqI GGGAC 2 cut(s) 150, 683
FatI CATG 7 cut(s) 711, 745, 1195, 1271, 1517, 1610, 1630
FauI CCCGC 1 cut(s) 212
FblI GTMKAC 1 cut(s) 386
FokI GGATG 3 cut(s) 1196, 1416, 1586
FriOI GRGCYC 1 cut(s) 546
FspBI CTAG 3 cut(s) 993, 1083, 1556
FspI TGCGCA 1 cut(s) 1672
GlaI GCGC 4 cut(s) 83, 660, 774, 1672
GsuI CTGGAG 1 cut(s) 1190
HaeII RGCGCY 2 cut(s) 85, 776
HaeIII GGCC 3 cut(s) 93, 703, 1143
HapII CCGG 2 cut(s) 90, 875
HgaI GACGC 1 cut(s) 224
HhaI GCGC 4 cut(s) 84, 661, 775, 1673
Hin1I GRCGYC 2 cut(s) 216, 288
Hin1II CATG 7 cut(s) 715, 749, 1199, 1275, 1521, 1614, 1634
Hin6I GCGC 4 cut(s) 82, 659, 773, 1671
HinP1I GCGC 4 cut(s) 82, 659, 773, 1671
HincII GTYRAC 1 cut(s) 1447
HindII GTYRAC 1 cut(s) 1447
HindIII AAGCTT 2 cut(s) 488, 1410
HinfI GANTC 6 cut(s) 301, 338, 671, 1465, 1534, 1714
HpaII CCGG 2 cut(s) 90, 875
HphI GGTGA 4 cut(s) 97, 143, 978, 1334
Hpy166II GTNNAC 3 cut(s) 40, 387, 1447
Hpy188I TCNGA 4 cut(s) 67, 343, 397, 691
Hpy8I GTNNAC 3 cut(s) 40, 387, 1447
Hpy99I CGWCG 3 cut(s) 218, 290, 293
HpyAV CCTTC 5 cut(s) 262, 1201, 1354, 1394, 1693
HpyCH4III ACNGT 4 cut(s) 476, 1003, 1390, 1441
HpyCH4IV ACGT 1 cut(s) 288
HpyF10VI GCNNNNNNNGC 6 cut(s) 90, 248, 566, 682, 772, 1372
HpyF3I CTNAG 4 cut(s) 506, 547, 759, 786
HpySE526I ACGT 1 cut(s) 288
Hsp92I GRCGYC 2 cut(s) 216, 288
Hsp92II CATG 7 cut(s) 715, 749, 1199, 1275, 1521, 1614, 1634
HspAI GCGC 4 cut(s) 82, 659, 773, 1671
KroI GCCGGC 1 cut(s) 89
KroNI GCCGGC 1 cut(s) 91
Kzo9I GATC 2 cut(s) 178, 1216
LguI GCTCTTC 1 cut(s) 1710
LmnI GCTCC 3 cut(s) 404, 752, 904
Lsp1109I GCAGC 4 cut(s) 22, 91, 583, 669
LweI GCATC 4 cut(s) 598, 625, 1174, 1515
MaeI CTAG 3 cut(s) 993, 1083, 1556
MaeII ACGT 1 cut(s) 288
MalI GATC 2 cut(s) 180, 1218
MboI GATC 2 cut(s) 178, 1216
MboII GAAGA 8 cut(s) 871, 975, 1141, 1211, 1289, 1337, 1529, 1697
MfeI CAATTG 1 cut(s) 1644
MhlI GDGCHC 2 cut(s) 546, 1526
MlsI TGGCCA 1 cut(s) 703
MluNI TGGCCA 1 cut(s) 703
MlyI GAGTC 1 cut(s) 665
MmeI TCCRAC 4 cut(s) 730, 1267, 1595, 1662
Mox20I TGGCCA 1 cut(s) 703
MroNI GCCGGC 1 cut(s) 89
MscI TGGCCA 1 cut(s) 703
MseI TTAA 5 cut(s) 486, 1059, 1580, 1590, 1710
MslI CAYNNNNRTG 2 cut(s) 440, 1609
Msp20I TGGCCA 1 cut(s) 703
MspA1I CMGCKG 1 cut(s) 34
MspCI CTTAAG 1 cut(s) 1709
MspI CCGG 2 cut(s) 90, 875
MunI CAATTG 1 cut(s) 1644
Mva1269I GAATGC 3 cut(s) 365, 630, 1078
MvnI CGCG 2 cut(s) 261, 661
MwoI GCNNNNNNNGC 6 cut(s) 90, 248, 566, 682, 772, 1372
NaeI GCCGGC 1 cut(s) 91
NdeII GATC 2 cut(s) 178, 1216
NgoMIV GCCGGC 1 cut(s) 89
NlaIII CATG 7 cut(s) 715, 749, 1199, 1275, 1521, 1614, 1634
NlaIV GGNNCC 5 cut(s) 166, 406, 754, 1342, 1525
NsbI TGCGCA 1 cut(s) 1672
NspI RCATGY 3 cut(s) 715, 1275, 1614
PagI TCATGA 1 cut(s) 1630
PciSI GCTCTTC 1 cut(s) 1710
PcsI WCGNNNNNNNCGW 1 cut(s) 93
PctI GAATGC 3 cut(s) 365, 630, 1078
PdiI GCCGGC 1 cut(s) 91
PfeI GAWTC 5 cut(s) 301, 338, 1465, 1534, 1714
PflFI GACNNNGTC 1 cut(s) 290
PleI GAGTC 1 cut(s) 665
PpsI GAGTC 1 cut(s) 665
PpuMI RGGWCCY 1 cut(s) 1340
Psp124BI GAGCTC 1 cut(s) 546
Psp5II RGGWCCY 1 cut(s) 1340
PspN4I GGNNCC 5 cut(s) 166, 406, 754, 1342, 1525
PspPI GGNCC 2 cut(s) 164, 1340
PspPPI RGGWCCY 1 cut(s) 1340
PsyI GACNNNGTC 1 cut(s) 290
RsaI GTAC 2 cut(s) 312, 1104
RsaNI GTAC 2 cut(s) 311, 1103
RseI CAYNNNNRTG 2 cut(s) 440, 1609
SacI GAGCTC 1 cut(s) 546
SapI GCTCTTC 1 cut(s) 1710
SaqAI TTAA 5 cut(s) 486, 1059, 1580, 1590, 1710
Sau3AI GATC 2 cut(s) 178, 1216
Sau96I GGNCC 2 cut(s) 164, 1340
ScaI AGTACT 1 cut(s) 1104
SchI GAGTC 1 cut(s) 665
SduI GDGCHC 2 cut(s) 546, 1526
SfaNI GCATC 4 cut(s) 598, 625, 1174, 1515
SfcI CTRYAG 1 cut(s) 387
SinI GGWCC 2 cut(s) 164, 1340
SmiMI CAYNNNNRTG 2 cut(s) 440, 1609
SmlI CTYRAG 2 cut(s) 333, 1709
SmoI CTYRAG 2 cut(s) 333, 1709
SpeI ACTAGT 1 cut(s) 992
SspMI CTAG 3 cut(s) 993, 1083, 1556
SstI GAGCTC 1 cut(s) 546
StyI CCWWGG 1 cut(s) 1041
TaaI ACNGT 4 cut(s) 476, 1003, 1390, 1441
TaiI ACGT 1 cut(s) 291
TaqI TCGA 7 cut(s) 96, 177, 606, 800, 977, 1070, 1725
TaqII GACCGA 1 cut(s) 152
TatI WGTACW 1 cut(s) 1102
TauI GCSGC 7 cut(s) 34, 210, 251, 261, 278, 281, 664
TfiI GAWTC 5 cut(s) 301, 338, 1465, 1534, 1714
Tru1I TTAA 5 cut(s) 486, 1059, 1580, 1590, 1710
Tru9I TTAA 5 cut(s) 486, 1059, 1580, 1590, 1710
TscAI CASTG 4 cut(s) 555, 763, 1444, 1569
TseI GCWGC 4 cut(s) 10, 79, 596, 682
TspDTI ATGAA 4 cut(s) 424, 975, 1128, 1344
TspRI CASTG 4 cut(s) 555, 763, 1444, 1569
Tth111I GACNNNGTC 1 cut(s) 290
Vha464I CTTAAG 1 cut(s) 1709
VpaK11BI GGWCC 2 cut(s) 164, 1340
XapI RAATTY 4 cut(s) 499, 602, 652, 1665
XceI RCATGY 3 cut(s) 715, 1275, 1614
XmiI GTMKAC 1 cut(s) 386
XspI CTAG 3 cut(s) 993, 1083, 1556
ZraI GACGTC 1 cut(s) 289
ZrmI AGTACT 1 cut(s) 1104
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.