RchiOBHm_Chr1g0315101

Protein of unknown function, DUF547

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Forward (+)
2331298 .. 2333799
2502 bp
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UTR
Exon/CDS
Intron
PRQ54564

Sequence Viewer

Length: 240 bp
ATGTGGTTAAAGCCAAACCCCATGATGTGTGACTCACTGATTGTGCAAACTAAGTTGAGCCAAAGTGATTCTCTCTGTAAATATTCTCATTCTAGCATCTCATGTGATTCTGAATTTCAGTCAGAGGTTGTGAAAGATGACTCGTTGTCAAAGGTGAGTAATCTTGATGAAGGTATTGAACGACTTGGATCCTGCAATAAAAGTTCATACCCGACAATTTCCAGCTTGAATAGGATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

79

Amino Acids

8.81

Weight (kDa)

5.15

Isoelectric Point (pI)

61.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 183, 196
AcsI RAATTY 1 cut(s) 113
AgsI TTSAA 2 cut(s) 179, 229
AhdI GACNNNNNGTC 1 cut(s) 145
AluBI AGCT 1 cut(s) 225
AluI AGCT 1 cut(s) 225
AlwI GGATC 2 cut(s) 183, 196
ApoI RAATTY 1 cut(s) 113
AsuHPI GGTGA 1 cut(s) 166
BamHI GGATCC 1 cut(s) 188
BfaI CTAG 1 cut(s) 93
BmeRI GACNNNNNGTC 1 cut(s) 145
BmiI GGNNCC 1 cut(s) 190
BmsI GCATC 1 cut(s) 105
BseGI GGATG 1 cut(s) 240
Bsp143I GATC 1 cut(s) 188
BspLI GGNNCC 1 cut(s) 190
BspPI GGATC 2 cut(s) 183, 196
BssMI GATC 1 cut(s) 188
BstDEI CTNAG 1 cut(s) 51
BstF5I GGATG 1 cut(s) 240
BstKTI GATC 1 cut(s) 191
BstMBI GATC 1 cut(s) 188
BstX2I RGATCY 1 cut(s) 188
BstYI RGATCY 1 cut(s) 188
BtsCI GGATG 1 cut(s) 240
BtsIMutI CAGTG 1 cut(s) 35
CviAII CATG 2 cut(s) 22, 102
CviJI RGCY 3 cut(s) 13, 60, 225
CviKI_1 RGCY 3 cut(s) 13, 60, 225
DdeI CTNAG 1 cut(s) 51
DpnI GATC 1 cut(s) 190
DpnII GATC 1 cut(s) 188
DriI GACNNNNNGTC 1 cut(s) 145
Eam1105I GACNNNNNGTC 1 cut(s) 145
FaeI CATG 2 cut(s) 25, 105
FaiI YATR 3 cut(s) 23, 103, 208
FatI CATG 2 cut(s) 21, 101
FspBI CTAG 1 cut(s) 93
Hin1II CATG 2 cut(s) 25, 105
HinfI GANTC 4 cut(s) 32, 68, 107, 140
HphI GGTGA 1 cut(s) 166
Hpy188I TCNGA 2 cut(s) 112, 124
Hpy188III TCNNGA 1 cut(s) 164
HpyAV CCTTC 1 cut(s) 164
HpyCH4V TGCA 2 cut(s) 46, 195
HpyF3I CTNAG 1 cut(s) 51
Hsp92II CATG 2 cut(s) 25, 105
Kzo9I GATC 1 cut(s) 188
LpnPI CCDG 2 cut(s) 205, 235
LweI GCATC 1 cut(s) 105
MaeI CTAG 1 cut(s) 93
MaeIII GTNAC 1 cut(s) 29
MalI GATC 1 cut(s) 190
MboI GATC 1 cut(s) 188
MflI RGATCY 1 cut(s) 188
MluCI AATT 2 cut(s) 113, 216
MlyI GAGTC 2 cut(s) 26, 134
MnlI CCTC 1 cut(s) 118
MseI TTAA 1 cut(s) 8
NdeII GATC 1 cut(s) 188
NlaIII CATG 2 cut(s) 25, 105
NlaIV GGNNCC 1 cut(s) 190
NmuCI GTSAC 1 cut(s) 29
PfeI GAWTC 2 cut(s) 68, 107
PleI GAGTC 2 cut(s) 26, 134
PpsI GAGTC 2 cut(s) 26, 134
PspN4I GGNNCC 1 cut(s) 190
PsuI RGATCY 1 cut(s) 188
SaqAI TTAA 1 cut(s) 8
Sau3AI GATC 1 cut(s) 188
SchI GAGTC 2 cut(s) 26, 134
SetI ASST 4 cut(s) 129, 156, 175, 227
SfaNI GCATC 1 cut(s) 105
SgeI CNNG 9 cut(s) 34, 105, 114, 154, 176, 197, 204, 223, 234
Sse9I AATT 2 cut(s) 113, 216
SspI AATATT 1 cut(s) 83
SspMI CTAG 1 cut(s) 93
TasI AATT 2 cut(s) 113, 216
TfiI GAWTC 2 cut(s) 68, 107
Tru1I TTAA 1 cut(s) 8
Tru9I TTAA 1 cut(s) 8
TscAI CASTG 1 cut(s) 42
TseFI GTSAC 1 cut(s) 29
Tsp45I GTSAC 1 cut(s) 29
TspDTI ATGAA 2 cut(s) 183, 195
TspRI CASTG 1 cut(s) 42
XapI RAATTY 1 cut(s) 113
XspI CTAG 1 cut(s) 93
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.