Rorug02G0406500

Protein of unknown function, DUF547

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0001176
Physical Location & Seq
Forward (+)
51865565 .. 51866473
909 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0406500.1

Sequence Viewer

Length: 909 bp
ATGTCCAGGATGTCATCACATTTTCCATCACCCCAATCCAGCAAGTCTTCGCCTAGGCTACCATCACCGCAATCTAGCAAGTCATCACCTAAGCTGCCATCACCGCCATCTAGCAAGTCATCGCCTCAGCCTCAGGTTGGGGAAGCTGGCTTATCACCTCAGCAGCAAGTTGGATCAGCATTTGAAGTTAGGGAGGGACTGGATTATGAAAGACAAAAGAAGCAAGAGTTTCTTCTGCAAACCTTTGCCAGACAACACAAGCATCCTAGAAAATGGAACCAATCAGAAATGAGTACGGAGATTTTCTACAACCGGCGCAGGAAGCATGAAAAGGTGTACACAGAGGCACTACAGAATGCCAGGAACACCATAACACTAGTTGCCATTTTGATCGCCACGGTTACTTTTGCTGCTGGCATTAGTCCCCCGGGTGGTGTTTATCAGGAGGGACTTATGAAAGGGAAGTCGATAGCAGGAACAACAACTGCTTTCAAGGTGTTTGAAATAAGCAATTACGTCGCACTATTCACATCACTCTCGATAGTTGTTGTTCTTGTGAGTATCATTCCATATCGGAGAAAGCCATTGATAAGATTGTTGAGGGTTGCTCATAAGGTAATGTGGGTAGCTGTGGCATTCATGGCAACAGGGTATGTTGCATCCACATGGGTTATCATGCAACAAAATCAGAAAAACAAATTGTTGTTTGTGGCCTTTTTGACTATAAGCATCGGAATTCTGGGAACAGTTTTCATTTGGCTGGGTGTTATGCTAGTTGTTCATTGCCTGCGAAAGTCGAAGTGGAGGAAGGGAAGAAGAGAGATTGGGGAGGCTGATGAGGATCCTGAAATGGGAAGCCAAAACTCAGATGTTGATAGCACATACAATCAAGGATATCATTCATATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF547 Lzipper-MIP1

Protein Analysis

302

Amino Acids

33.88

Weight (kDa)

10.05

Isoelectric Point (pI)

63.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PGG PF13962 115 - 224 1.8e-30 Domain of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 68, 104
AclWI GGATC 3 cut(s) 181, 836, 849
AcsI RAATTY 1 cut(s) 735
AfaI GTAC 2 cut(s) 295, 338
AfiI CCNNNNNNNGG 3 cut(s) 137, 431, 851
AgsI TTSAA 3 cut(s) 185, 493, 503
AhlI ACTAGT 1 cut(s) 376
AjnI CCWGG 2 cut(s) 5, 359
AluBI AGCT 3 cut(s) 94, 146, 629
AluI AGCT 3 cut(s) 94, 146, 629
AlwI GGATC 3 cut(s) 181, 836, 849
Ama87I CYCGRG 1 cut(s) 427
AoxI GGCC 1 cut(s) 711
ApeKI GCWGC 3 cut(s) 94, 163, 410
ApoI RAATTY 1 cut(s) 735
AspA2I CCTAGG 1 cut(s) 53
AspLEI GCGC 1 cut(s) 318
AsuC2I CCSGG 2 cut(s) 428, 429
AsuHPI GGTGA 5 cut(s) 21, 57, 78, 93, 147
AvaI CYCGRG 1 cut(s) 427
AvrII CCTAGG 1 cut(s) 53
AxyI CCTNAGG 1 cut(s) 132
BamHI GGATCC 1 cut(s) 841
BbsI GAAGAC 1 cut(s) 39
BbvCI CCTCAGC 2 cut(s) 126, 159
BbvI GCAGC 3 cut(s) 81, 175, 397
BccI CCATC 4 cut(s) 34, 70, 106, 115
BcgI CGANNNNNNTGC 2 cut(s) 499, 533
BciT130I CCWGG 2 cut(s) 7, 361
BcnI CCSGG 2 cut(s) 428, 429
BcuI ACTAGT 1 cut(s) 376
BfaI CTAG 6 cut(s) 54, 75, 111, 267, 377, 773
BfmI CTRYAG 1 cut(s) 350
BisI GCNGC 3 cut(s) 95, 164, 411
BlnI CCTAGG 1 cut(s) 53
BlsI GCNGC 3 cut(s) 96, 165, 412
Bme1390I CCNGG 4 cut(s) 7, 361, 428, 429
BmeT110I CYCGRG 1 cut(s) 427
BmiI GGNNCC 2 cut(s) 278, 843
BmrFI CCNGG 4 cut(s) 7, 361, 428, 429
BmsI GCATC 3 cut(s) 271, 668, 738
BpiI GAAGAC 1 cut(s) 39
BplI GAGNNNNNCTC 2 cut(s) 592, 624
Bpu10I CCTNAGC 3 cut(s) 90, 126, 159
BpuMI CCSGG 2 cut(s) 428, 429
BsaBI GATNNNNATC 1 cut(s) 840
BsaJI CCNNGG 4 cut(s) 53, 396, 426, 427
Bsc4I CCNNNNNNNGG 3 cut(s) 137, 431, 851
Bse118I RCCGGY 1 cut(s) 312
Bse1I ACTGG 1 cut(s) 204
Bse21I CCTNAGG 1 cut(s) 132
Bse3DI GCAATG 1 cut(s) 781
Bse8I GATNNNNATC 1 cut(s) 840
BseBI CCWGG 2 cut(s) 7, 361
BseDI CCNNGG 4 cut(s) 53, 396, 426, 427
BseGI GGATG 3 cut(s) 15, 262, 659
BseJI GATNNNNATC 1 cut(s) 840
BseLI CCNNNNNNNGG 3 cut(s) 137, 431, 851
BseMI GCAATG 1 cut(s) 781
BseMII CTCAG 4 cut(s) 140, 146, 173, 879
BseNI ACTGG 1 cut(s) 204
BseXI GCAGC 3 cut(s) 81, 175, 397
BseYI CCCAGC 1 cut(s) 760
BshFI GGCC 1 cut(s) 713
BsiHKCI CYCGRG 1 cut(s) 427
BsiSI CCGG 2 cut(s) 313, 428
BslFI GGGAC 3 cut(s) 210, 408, 462
BslI CCNNNNNNNGG 3 cut(s) 137, 431, 851
BsmFI GGGAC 3 cut(s) 210, 408, 462
BsmI GAATGC 2 cut(s) 361, 635
BsnI GGCC 1 cut(s) 713
BsoBI CYCGRG 1 cut(s) 427
Bsp1407I TGTACA 1 cut(s) 336
Bsp143I GATC 3 cut(s) 173, 390, 841
BspACI CCGC 2 cut(s) 68, 104
BspANI GGCC 1 cut(s) 713
BspCNI CTCAG 4 cut(s) 139, 145, 172, 878
BspLI GGNNCC 2 cut(s) 278, 843
BspPI GGATC 3 cut(s) 181, 836, 849
BsrDI GCAATG 1 cut(s) 781
BsrFI RCCGGY 1 cut(s) 312
BsrGI TGTACA 1 cut(s) 336
BsrI ACTGG 1 cut(s) 204
BssAI RCCGGY 1 cut(s) 312
BssECI CCNNGG 4 cut(s) 53, 396, 426, 427
BssMI GATC 3 cut(s) 173, 390, 841
BssT1I CCWWGG 1 cut(s) 53
Bst2UI CCWGG 2 cut(s) 7, 361
Bst4CI ACNGT 2 cut(s) 400, 748
Bst6I CTCTTC 1 cut(s) 811
BstAUI TGTACA 1 cut(s) 336
BstC8I GCNNGC 3 cut(s) 148, 415, 788
BstDEI CTNAG 5 cut(s) 90, 126, 132, 159, 865
BstDSI CCRYGG 1 cut(s) 396
BstF5I GGATG 3 cut(s) 15, 262, 659
BstHHI GCGC 1 cut(s) 318
BstKTI GATC 3 cut(s) 176, 393, 844
BstMBI GATC 3 cut(s) 173, 390, 841
BstMWI GCNNNNNNNGC 3 cut(s) 103, 322, 641
BstNI CCWGG 2 cut(s) 7, 361
BstSCI CCNGG 4 cut(s) 5, 359, 426, 427
BstSFI CTRYAG 1 cut(s) 350
BstV1I GCAGC 3 cut(s) 81, 175, 397
BstV2I GAAGAC 1 cut(s) 39
BstX2I RGATCY 1 cut(s) 841
BstYI RGATCY 1 cut(s) 841
Bsu36I CCTNAGG 1 cut(s) 132
BsuRI GGCC 1 cut(s) 713
BtgI CCRYGG 1 cut(s) 396
BtgZI GCGATG 1 cut(s) 105
BtsCI GGATG 3 cut(s) 15, 262, 659
Cac8I GCNNGC 3 cut(s) 148, 415, 788
CfoI GCGC 1 cut(s) 318
Cfr10I RCCGGY 1 cut(s) 312
Cfr9I CCCGGG 1 cut(s) 427
Csp6I GTAC 2 cut(s) 294, 337
CviAII CATG 4 cut(s) 326, 640, 666, 676
CviQI GTAC 2 cut(s) 294, 337
DdeI CTNAG 5 cut(s) 90, 126, 132, 159, 865
DpnI GATC 3 cut(s) 175, 392, 843
DpnII GATC 3 cut(s) 173, 390, 841
Eam1104I CTCTTC 1 cut(s) 811
EarI CTCTTC 1 cut(s) 811
Eco130I CCWWGG 1 cut(s) 53
Eco32I GATATC 1 cut(s) 896
Eco81I CCTNAGG 1 cut(s) 132
Eco88I CYCGRG 1 cut(s) 427
EcoRI GAATTC 1 cut(s) 735
EcoRII CCWGG 2 cut(s) 5, 359
EcoRV GATATC 1 cut(s) 896
EcoT14I CCWWGG 1 cut(s) 53
ErhI CCWWGG 1 cut(s) 53
FaeI CATG 4 cut(s) 329, 643, 669, 679
FalI AAGNNNNNCTT 2 cut(s) 216, 248
FaqI GGGAC 3 cut(s) 210, 408, 462
FatI CATG 4 cut(s) 325, 639, 665, 675
Fnu4HI GCNGC 3 cut(s) 95, 164, 411
FokI GGATG 3 cut(s) 22, 249, 646
Fsp4HI GCNGC 3 cut(s) 95, 164, 411
FspBI CTAG 6 cut(s) 54, 75, 111, 267, 377, 773
GlaI GCGC 1 cut(s) 317
GluI GCNGC 3 cut(s) 95, 164, 411
GsaI CCCAGC 1 cut(s) 764
HaeIII GGCC 1 cut(s) 713
HapII CCGG 2 cut(s) 313, 428
HhaI GCGC 1 cut(s) 318
Hin1II CATG 4 cut(s) 329, 643, 669, 679
Hin6I GCGC 1 cut(s) 316
HinP1I GCGC 1 cut(s) 316
HpaII CCGG 2 cut(s) 313, 428
HphI GGTGA 5 cut(s) 21, 57, 78, 93, 147
Hpy166II GTNNAC 2 cut(s) 337, 339
Hpy188I TCNGA 5 cut(s) 286, 576, 690, 734, 868
Hpy188III TCNNGA 3 cut(s) 443, 538, 845
Hpy8I GTNNAC 2 cut(s) 337, 339
Hpy99I CGWCG 1 cut(s) 521
HpyAV CCTTC 1 cut(s) 802
HpyCH4III ACNGT 2 cut(s) 400, 748
HpyCH4IV ACGT 1 cut(s) 516
HpyCH4V TGCA 3 cut(s) 238, 659, 679
HpyF10VI GCNNNNNNNGC 3 cut(s) 103, 322, 641
HpyF3I CTNAG 5 cut(s) 90, 126, 132, 159, 865
HpySE526I ACGT 1 cut(s) 516
Hsp92II CATG 4 cut(s) 329, 643, 669, 679
HspAI GCGC 1 cut(s) 316
Kzo9I GATC 3 cut(s) 173, 390, 841
Lsp1109I GCAGC 3 cut(s) 81, 175, 397
LweI GCATC 3 cut(s) 271, 668, 738
MaeI CTAG 6 cut(s) 54, 75, 111, 267, 377, 773
MaeII ACGT 1 cut(s) 516
MaeIII GTNAC 1 cut(s) 400
MalI GATC 3 cut(s) 175, 392, 843
MboI GATC 3 cut(s) 173, 390, 841
MboII GAAGA 4 cut(s) 39, 224, 825, 828
MflI RGATCY 1 cut(s) 841
MluCI AATT 3 cut(s) 511, 698, 735
MmeI TCCRAC 1 cut(s) 151
MslI CAYNNNNRTG 1 cut(s) 664
MspI CCGG 2 cut(s) 313, 428
MspR9I CCNGG 4 cut(s) 7, 361, 428, 429
Mva1269I GAATGC 2 cut(s) 361, 635
MvaI CCWGG 2 cut(s) 7, 361
MwoI GCNNNNNNNGC 3 cut(s) 103, 322, 641
NciI CCSGG 2 cut(s) 428, 429
NdeII GATC 3 cut(s) 173, 390, 841
NlaIII CATG 4 cut(s) 329, 643, 669, 679
NlaIV GGNNCC 2 cut(s) 278, 843
PctI GAATGC 2 cut(s) 361, 635
PfoI TCCNGGA 1 cut(s) 5
PkrI GCNGC 3 cut(s) 96, 165, 412
Psp6I CCWGG 2 cut(s) 5, 359
PspFI CCCAGC 1 cut(s) 760
PspGI CCWGG 2 cut(s) 5, 359
PspN4I GGNNCC 2 cut(s) 278, 843
PsuI RGATCY 1 cut(s) 841
RsaI GTAC 2 cut(s) 295, 338
RsaNI GTAC 2 cut(s) 294, 337
RseI CAYNNNNRTG 1 cut(s) 664
SatI GCNGC 3 cut(s) 95, 164, 411
Sau3AI GATC 3 cut(s) 173, 390, 841
ScrFI CCNGG 4 cut(s) 7, 361, 428, 429
SfaNI GCATC 3 cut(s) 271, 668, 738
SfcI CTRYAG 1 cut(s) 350
SmaI CCCGGG 1 cut(s) 429
SmiMI CAYNNNNRTG 1 cut(s) 664
SpeI ACTAGT 1 cut(s) 376
Sse9I AATT 3 cut(s) 511, 698, 735
SsiI CCGC 2 cut(s) 68, 104
SspMI CTAG 6 cut(s) 54, 75, 111, 267, 377, 773
StyD4I CCNGG 4 cut(s) 5, 359, 426, 427
StyI CCWWGG 1 cut(s) 53
TaaI ACNGT 2 cut(s) 400, 748
TaiI ACGT 1 cut(s) 519
TaqI TCGA 3 cut(s) 467, 539, 797
TasI AATT 3 cut(s) 511, 698, 735
TatI WGTACW 1 cut(s) 336
TseI GCWGC 3 cut(s) 94, 163, 410
TspDTI ATGAA 7 cut(s) 222, 342, 470, 628, 742, 770, 891
TspGWI ACGGA 1 cut(s) 311
TspMI CCCGGG 1 cut(s) 427
XapI RAATTY 1 cut(s) 735
XmaI CCCGGG 1 cut(s) 427
XmaJI CCTAGG 1 cut(s) 53
XspI CTAG 6 cut(s) 54, 75, 111, 267, 377, 773
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.