RLG00000019778

No description available

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Reverse (-)
56613046 .. 56614684
1639 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019778

Sequence Viewer

Length: 408 bp
ATGGTCATCTCGCTCATCGTTATCCTTGTCCCCCCGATTCAGAAATTAGAAGGTGTTGATACATTGGGGTTTCGAATAAGTCATTCGATTGGCGGCGGCGTCGTATTGGGTTTGGGTGTGAAATTTTCACTTGCCAAATTCCTCAGGAAACTAAGTGGAATGTTGAATTCAGTTTACTATGATGGAATTTGTTCTGCTGTGGACGAGGGTCATGATGTGGTGCATGTTAGTGGATTTGCAGGATTTGTGAAAGCTTGTCTGTACCTGCGTATAGCTTCTGGTCTTCTAGTACCAGAAGCCAAGCTGTTTTTGCATTTGGAGGATTTGCTTTATGTGGATAAAGCCAAACCCCATGATCGCAGGATGATGCGTGACTCACCGATTGTGCAAACTAAGTTCAGCGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

136

Amino Acids

14.78

Weight (kDa)

8.58

Isoelectric Point (pI)

29.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 273
AciI CCGC 2 cut(s) 93, 96
AcsI RAATTY 4 cut(s) 122, 137, 166, 186
AcyI GRCGYC 1 cut(s) 99
AfaI GTAC 2 cut(s) 263, 291
AgsI TTSAA 1 cut(s) 166
AluBI AGCT 3 cut(s) 254, 275, 304
AluI AGCT 3 cut(s) 254, 275, 304
ApoI RAATTY 4 cut(s) 122, 137, 166, 186
Asp700I GAANNNNTTC 1 cut(s) 190
AsuHPI GGTGA 1 cut(s) 369
AsuII TTCGAA 1 cut(s) 73
AxyI CCTNAGG 1 cut(s) 143
BbsI GAAGAC 1 cut(s) 275
BccI CCATC 1 cut(s) 176
BfaI CTAG 1 cut(s) 287
BfuAI ACCTGC 1 cut(s) 273
BisI GCNGC 2 cut(s) 94, 97
BlsI GCNGC 2 cut(s) 95, 98
BmsI GCATC 1 cut(s) 357
BoxI GACNNNNGTC 1 cut(s) 207
BpiI GAAGAC 1 cut(s) 275
Bpu14I TTCGAA 1 cut(s) 73
BsaHI GRCGYC 1 cut(s) 99
Bse21I CCTNAGG 1 cut(s) 143
BseGI GGATG 1 cut(s) 369
BseMII CTCAG 1 cut(s) 157
BslFI GGGAC 1 cut(s) 14
BsmFI GGGAC 1 cut(s) 14
Bsp119I TTCGAA 1 cut(s) 73
Bsp143I GATC 1 cut(s) 355
BspACI CCGC 2 cut(s) 93, 96
BspCNI CTCAG 1 cut(s) 156
BspHI TCATGA 1 cut(s) 211
BspMI ACCTGC 1 cut(s) 273
BspT104I TTCGAA 1 cut(s) 73
BssMI GATC 1 cut(s) 355
BssNI GRCGYC 1 cut(s) 99
BstACI GRCGYC 1 cut(s) 99
BstBI TTCGAA 1 cut(s) 73
BstDEI CTNAG 3 cut(s) 143, 152, 393
BstF5I GGATG 1 cut(s) 369
BstKTI GATC 1 cut(s) 358
BstMBI GATC 1 cut(s) 355
BstMWI GCNNNNNNNGC 1 cut(s) 310
BstNSI RCATGY 1 cut(s) 227
BstPAI GACNNNNGTC 1 cut(s) 207
BstV2I GAAGAC 1 cut(s) 275
Bsu36I CCTNAGG 1 cut(s) 143
BtsCI GGATG 1 cut(s) 369
BveI ACCTGC 1 cut(s) 273
CciI TCATGA 1 cut(s) 211
CseI GACGC 1 cut(s) 88
Csp6I GTAC 2 cut(s) 262, 290
CviAII CATG 3 cut(s) 212, 224, 353
CviJI RGCY 5 cut(s) 254, 275, 299, 304, 344
CviKI_1 RGCY 5 cut(s) 254, 275, 299, 304, 344
CviQI GTAC 2 cut(s) 262, 290
DdeI CTNAG 3 cut(s) 143, 152, 393
DpnI GATC 1 cut(s) 357
DpnII GATC 1 cut(s) 355
Eco81I CCTNAGG 1 cut(s) 143
EcoRI GAATTC 1 cut(s) 166
FaeI CATG 3 cut(s) 215, 227, 356
FaiI YATR 6 cut(s) 180, 213, 225, 272, 333, 354
FaqI GGGAC 1 cut(s) 14
FatI CATG 3 cut(s) 211, 223, 352
Fnu4HI GCNGC 2 cut(s) 94, 97
FokI GGATG 1 cut(s) 376
Fsp4HI GCNGC 2 cut(s) 94, 97
FspBI CTAG 1 cut(s) 287
GluI GCNGC 2 cut(s) 94, 97
HgaI GACGC 1 cut(s) 88
Hin1I GRCGYC 1 cut(s) 99
Hin1II CATG 3 cut(s) 215, 227, 356
HindIII AAGCTT 1 cut(s) 252
HinfI GANTC 2 cut(s) 37, 374
HphI GGTGA 1 cut(s) 369
Hpy166II GTNNAC 2 cut(s) 175, 202
Hpy188I TCNGA 1 cut(s) 42
Hpy188III TCNNGA 2 cut(s) 145, 212
Hpy8I GTNNAC 2 cut(s) 175, 202
Hpy99I CGWCG 1 cut(s) 104
HpyAV CCTTC 1 cut(s) 44
HpyCH4V TGCA 4 cut(s) 223, 239, 313, 388
HpyF10VI GCNNNNNNNGC 1 cut(s) 310
HpyF3I CTNAG 3 cut(s) 143, 152, 393
Hsp92I GRCGYC 1 cut(s) 99
Hsp92II CATG 3 cut(s) 215, 227, 356
Kzo9I GATC 1 cut(s) 355
LpnPI CCDG 6 cut(s) 130, 225, 264, 278, 306, 346
LweI GCATC 1 cut(s) 357
MaeI CTAG 1 cut(s) 287
MaeIII GTNAC 1 cut(s) 371
MalI GATC 1 cut(s) 357
MboI GATC 1 cut(s) 355
MboII GAAGA 1 cut(s) 275
MluCI AATT 5 cut(s) 44, 122, 137, 166, 186
MlyI GAGTC 1 cut(s) 368
MnlI CCTC 3 cut(s) 152, 199, 313
MroXI GAANNNNTTC 1 cut(s) 190
MslI CAYNNNNRTG 1 cut(s) 228
MwoI GCNNNNNNNGC 1 cut(s) 310
NdeII GATC 1 cut(s) 355
NlaIII CATG 3 cut(s) 215, 227, 356
NmuCI GTSAC 1 cut(s) 371
NspI RCATGY 1 cut(s) 227
NspV TTCGAA 1 cut(s) 73
PagI TCATGA 1 cut(s) 211
PdmI GAANNNNTTC 1 cut(s) 190
PfeI GAWTC 1 cut(s) 37
PkrI GCNGC 2 cut(s) 95, 98
PleI GAGTC 1 cut(s) 368
PpsI GAGTC 1 cut(s) 368
PshAI GACNNNNGTC 1 cut(s) 207
RsaI GTAC 2 cut(s) 263, 291
RsaNI GTAC 2 cut(s) 262, 290
RseI CAYNNNNRTG 1 cut(s) 228
SatI GCNGC 2 cut(s) 94, 97
Sau3AI GATC 1 cut(s) 355
SchI GAGTC 1 cut(s) 368
SetI ASST 5 cut(s) 55, 256, 267, 277, 306
SfaNI GCATC 1 cut(s) 357
SfuI TTCGAA 1 cut(s) 73
SmiMI CAYNNNNRTG 1 cut(s) 228
Sse9I AATT 5 cut(s) 44, 122, 137, 166, 186
SsiI CCGC 2 cut(s) 93, 96
SspMI CTAG 1 cut(s) 287
TaqI TCGA 2 cut(s) 73, 86
TasI AATT 5 cut(s) 44, 122, 137, 166, 186
TauI GCSGC 2 cut(s) 96, 99
TfiI GAWTC 1 cut(s) 37
TseFI GTSAC 1 cut(s) 371
Tsp45I GTSAC 1 cut(s) 371
XapI RAATTY 4 cut(s) 122, 137, 166, 186
XceI RCATGY 1 cut(s) 227
XmnI GAANNNNTTC 1 cut(s) 190
XspI CTAG 1 cut(s) 287
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.