Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0011369

Physical Location & Seq

Genomic Coordinates Forward (+)

62549056 .. 62553840

Gene Structure 4785 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG406800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGGCTGCATTGAATGGGTATTTTGATTGCGTACAGCTCCTACTTGATCTTCATGCAAATGTGGCAGCTGTTACATTTCATTATGGAACGTCTATGGATTTAATAGGAGCCGGAAGTTCTCCATTGCACTACGCTGCTTGTGGGGGTAACTTAAAATGCTGTCAGATCCTCCTTGCAAGAGGTGCTAGCAAGATGACTTTAAATTGCAATGGGTGGCTTCCTCTTGATGTTGCCAGAATGTGGGGGCGCCACTGGCTTGAACCGCTGCTAGCACCCAATTCTGACACAATAATACCGGCATTCCCCCGTTCTAATTACCTATCACTGCCTCTCATGAGCATACTGAACGTAGCAAGAGAGTGTGGATTCAAGTCTGGAACAACCTCAACCGATGAGGCTGATACTTGTGCTGTCTGCCTGGAAAGAGCATGTTTTGTTGCTGCAGAAGGATGTAAGCATGAGCTTTGTGTTAGATGCGCACTCTATCTCTGCTCAACAAGCAACATCCCTGCAGAAATGGTAGGCCCACCAGGGTCCATTCCATGCCCTTTTTGTAGGCATGGAATCATCTCGTTTGTAAAGTTGCCTGGTTCCCCAGCAAAGGAAAACAAAATACCCATGTCACTCGGCCTCTGTACCCCATGCATGCTTCATCGTGACCCTCACCGTGAATCCCCAGCTTGTGCTCCAGAGATAAAAAAGAACCGTGTAGCTTCAGTTTCTTCAGAACTACTCTGCCCGGTCACTTGTAGTCCATTTCCTTCCGTTGCCATTCCATTGTGCACTTGCAATGATGGTCCATGCCCACCATTTGAATCCCGGAATGCAGAAACTCAAGATGAATTTCCCGGTTCACAAGCGACGTCAACAGACCAGAGTAAAATGGAAGGGCCAAGACTTGAAAAAACAAGCTGTTCAAACATGTTCTGGAGCAGAAGAAGCTGCAGCAGGGAGCATCAGTGCAATGCTGAGATAAACGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank Ank_2 Ank_3 Ank_4 Ank_5

Protein Analysis

327

Amino Acids

35.31

Weight (kDa)

6.49

Isoelectric Point (pI)

57.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ank_2	PF12796	1 - 85	4.2e-10	Ankyrin repeats (3 copies)
RING_XB3-XBAT31	PF24921	135 - 190	7.8e-18	E3 ubiquitin-protein ligase XB3/XBAT31 RING finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011369)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07270
fragaria_vesca	FvH4_7g29140
malus_domestica	MD01G1198300.v1.1 MD07G1266000.v1.1
prunus_persica	Prupe.2G291800_v2.0.a1 Prupe.2G291800_v2.0.a1 Prupe.2G291800_v2.0.a1 Prupe.2G291800_v2.0.a1 Prupe.2G291800_v2.0.a1
pyrus_communis	pycom01g20850 pycom07g24400
rosa_chinensis	RchiOBHm_Chr1g0376931
rosa_laevigata	RLG00000026559
rosa_multiflora	Rmu_ssc0000155.1_g000038
rosa_roxburghii	Rroxscaffold_4G00281630
rosa_rugosa	Rorug01G0399600
rosa_samantha	Rh1AG416800 Rh1BG376200 Rh1DG406800
rosa_wichuraiana	Rw1G036570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	866
Acc16I	TGCGCA	1 cut(s)	478
AccB1I	GGYRCC	1 cut(s)	246
AccB7I	CCANNNNNTGG	1 cut(s)	240
AciI	CCGC	1 cut(s)	263
AclWI	GGATC	1 cut(s)	160
AcsI	RAATTY	1 cut(s)	842
AcuI	CTGAAG	2 cut(s)	699, 708
AcyI	GRCGYC	2 cut(s)	247, 863
AfaI	GTAC	2 cut(s)	33, 637
AfiI	CCNNNNNNNGG	2 cut(s)	240, 601
AflIII	ACRYGT	1 cut(s)	921
AgsI	TTSAA	6 cut(s)	13, 260, 370, 815, 902, 918
AjnI	CCWGG	3 cut(s)	417, 529, 586
AluBI	AGCT	7 cut(s)	37, 68, 463, 680, 713, 912, 942
AluI	AGCT	7 cut(s)	37, 68, 463, 680, 713, 912, 942
Alw21I	GWGCWC	2 cut(s)	688, 785
Alw44I	GTGCAC	1 cut(s)	781
AlwI	GGATC	1 cut(s)	160
AoxI	GGCC	3 cut(s)	523, 628, 890
ApaLI	GTGCAC	1 cut(s)	781
ApeKI	GCWGC	7 cut(s)	5, 65, 134, 265, 440, 942, 945
ApoI	RAATTY	1 cut(s)	842
AspLEI	GCGC	2 cut(s)	249, 479
AspS9I	GGNCC	4 cut(s)	524, 534, 797, 890
AsuC2I	CCSGG	3 cut(s)	740, 820, 849
AsuHPI	GGTGA	1 cut(s)	656
AsuNHI	GCTAGC	2 cut(s)	185, 268
AvaII	GGWCC	2 cut(s)	534, 797
BaeGI	GKGCMC	1 cut(s)	785
BanI	GGYRCC	1 cut(s)	246
Bbv12I	GWGCWC	2 cut(s)	688, 785
BbvI	GCAGC	6 cut(s)	77, 121, 252, 427, 929, 957
BccI	CCATC	1 cut(s)	788
BciT130I	CCWGG	3 cut(s)	419, 531, 588
BcnI	CCSGG	3 cut(s)	740, 820, 849
BfaI	CTAG	2 cut(s)	186, 269
BfmI	CTRYAG	3 cut(s)	441, 510, 943
BfoI	RGCGCY	1 cut(s)	250
BisI	GCNGC	7 cut(s)	6, 66, 135, 266, 441, 943, 946
BlsI	GCNGC	7 cut(s)	7, 67, 136, 267, 442, 944, 947
Bme1390I	CCNGG	6 cut(s)	419, 531, 588, 740, 820, 849
Bme18I	GGWCC	2 cut(s)	534, 797
BmgT120I	GGNCC	4 cut(s)	524, 534, 797, 890
BmiI	GGNNCC	4 cut(s)	109, 248, 535, 592
BmrFI	CCNGG	6 cut(s)	419, 531, 588, 740, 820, 849
BmsI	GCATC	2 cut(s)	464, 964
BmtI	GCTAGC	2 cut(s)	189, 272
BpmI	CTGGAG	2 cut(s)	672, 949
BpuEI	CTTGAG	1 cut(s)	819
BpuMI	CCSGG	3 cut(s)	740, 820, 849
BsaHI	GRCGYC	2 cut(s)	247, 863
BsaJI	CCNNGG	1 cut(s)	530
BsaXI	ACNNNNNCTCC	2 cut(s)	944, 974
Bsc4I	CCNNNNNNNGG	2 cut(s)	240, 601
Bse118I	RCCGGY	1 cut(s)	295
Bse1I	ACTGG	1 cut(s)	257
Bse3DI	GCAATG	4 cut(s)	122, 214, 796, 970
BseBI	CCWGG	3 cut(s)	419, 531, 588
BseDI	CCNNGG	1 cut(s)	530
BseGI	GGATG	2 cut(s)	455, 504
BseLI	CCNNNNNNNGG	2 cut(s)	240, 601
BseMI	GCAATG	4 cut(s)	122, 214, 796, 970
BseMII	CTCAG	1 cut(s)	960
BseNI	ACTGG	1 cut(s)	257
BseSI	GKGCMC	1 cut(s)	785
BseXI	GCAGC	6 cut(s)	77, 121, 252, 427, 929, 957
BseYI	CCCAGC	2 cut(s)	595, 676
BshFI	GGCC	3 cut(s)	525, 630, 892
BshNI	GGYRCC	1 cut(s)	246
BsiHKAI	GWGCWC	2 cut(s)	688, 785
BsiSI	CCGG	5 cut(s)	111, 296, 740, 820, 849
BslI	CCNNNNNNNGG	2 cut(s)	240, 601
BsmI	GAATGC	2 cut(s)	299, 829
BsnI	GGCC	3 cut(s)	525, 630, 892
Bsp1286I	GDGCHC	2 cut(s)	688, 785
Bsp143I	GATC	2 cut(s)	46, 165
BspACI	CCGC	1 cut(s)	263
BspANI	GGCC	3 cut(s)	525, 630, 892
BspCNI	CTCAG	1 cut(s)	961
BspHI	TCATGA	1 cut(s)	333
BspLI	GGNNCC	4 cut(s)	109, 248, 535, 592
BspMAI	CTGCAG	3 cut(s)	445, 514, 947
BspOI	GCTAGC	2 cut(s)	189, 272
BspPI	GGATC	1 cut(s)	160
BspT107I	GGYRCC	1 cut(s)	246
BsrDI	GCAATG	4 cut(s)	122, 214, 796, 970
BsrFI	RCCGGY	1 cut(s)	295
BsrI	ACTGG	1 cut(s)	257
BssAI	RCCGGY	1 cut(s)	295
BssECI	CCNNGG	1 cut(s)	530
BssMI	GATC	2 cut(s)	46, 165
BssNI	GRCGYC	2 cut(s)	247, 863
Bst2UI	CCWGG	3 cut(s)	419, 531, 588
Bst4CI	ACNGT	2 cut(s)	668, 707
BstACI	GRCGYC	2 cut(s)	247, 863
BstAPI	GCANNNNNTGC	1 cut(s)	182
BstC8I	GCNNGC	3 cut(s)	187, 270, 647
BstDEI	CTNAG	1 cut(s)	969
BstF5I	GGATG	2 cut(s)	455, 504
BstH2I	RGCGCY	1 cut(s)	250
BstHHI	GCGC	2 cut(s)	249, 479
BstKTI	GATC	2 cut(s)	49, 168
BstMBI	GATC	2 cut(s)	46, 165
BstMWI	GCNNNNNNNGC	6 cut(s)	62, 182, 253, 262, 498, 939
BstNI	CCWGG	3 cut(s)	419, 531, 588
BstNSI	RCATGY	3 cut(s)	432, 649, 925
BstSCI	CCNGG	6 cut(s)	417, 529, 586, 738, 818, 847
BstSFI	CTRYAG	3 cut(s)	441, 510, 943
BstSLI	GKGCMC	1 cut(s)	785
BstV1I	GCAGC	6 cut(s)	77, 121, 252, 427, 929, 957
BstX2I	RGATCY	1 cut(s)	165
BstYI	RGATCY	1 cut(s)	165
BsuRI	GGCC	3 cut(s)	525, 630, 892
BtsCI	GGATG	2 cut(s)	455, 504
BtsI	GCAGTG	1 cut(s)	323
BtsIMutI	CAGTG	3 cut(s)	250, 323, 965
Cac8I	GCNNGC	3 cut(s)	187, 270, 647
CciI	TCATGA	1 cut(s)	333
CfoI	GCGC	2 cut(s)	249, 479
Cfr10I	RCCGGY	1 cut(s)	295
Cfr13I	GGNCC	4 cut(s)	524, 534, 797, 890
Csp6I	GTAC	2 cut(s)	32, 636
CviQI	GTAC	2 cut(s)	32, 636
DdeI	CTNAG	1 cut(s)	969
DinI	GGCGCC	1 cut(s)	248
DpnI	GATC	2 cut(s)	48, 167
DpnII	GATC	2 cut(s)	46, 165
DraI	TTTAAA	1 cut(s)	201
Eco47I	GGWCC	2 cut(s)	534, 797
Eco57I	CTGAAG	2 cut(s)	699, 708
EcoRII	CCWGG	3 cut(s)	417, 529, 586
EcoT22I	ATGCAT	1 cut(s)	647
EgeI	GGCGCC	1 cut(s)	248
EheI	GGCGCC	1 cut(s)	248
Fnu4HI	GCNGC	7 cut(s)	6, 66, 135, 266, 441, 943, 946
FokI	GGATG	2 cut(s)	462, 491
Fsp4HI	GCNGC	7 cut(s)	6, 66, 135, 266, 441, 943, 946
FspAI	RTGCGCAY	1 cut(s)	478
FspBI	CTAG	2 cut(s)	186, 269
FspI	TGCGCA	1 cut(s)	478
GlaI	GCGC	2 cut(s)	248, 478
GluI	GCNGC	7 cut(s)	6, 66, 135, 266, 441, 943, 946
GsaI	CCCAGC	2 cut(s)	599, 680
GsuI	CTGGAG	2 cut(s)	672, 949
HaeII	RGCGCY	1 cut(s)	250
HaeIII	GGCC	3 cut(s)	525, 630, 892
HapII	CCGG	5 cut(s)	111, 296, 740, 820, 849
HhaI	GCGC	2 cut(s)	249, 479
Hin1I	GRCGYC	2 cut(s)	247, 863
Hin6I	GCGC	2 cut(s)	247, 477
HinP1I	GCGC	2 cut(s)	247, 477
HincII	GTYRAC	1 cut(s)	867
HindII	GTYRAC	1 cut(s)	867
HinfI	GANTC	4 cut(s)	366, 564, 671, 815
HpaII	CCGG	5 cut(s)	111, 296, 740, 820, 849
HphI	GGTGA	1 cut(s)	656
Hpy166II	GTNNAC	3 cut(s)	783, 854, 867
Hpy188I	TCNGA	3 cut(s)	165, 283, 727
Hpy188III	TCNNGA	7 cut(s)	224, 334, 375, 656, 689, 836, 928
Hpy8I	GTNNAC	3 cut(s)	783, 854, 867
Hpy99I	CGWCG	1 cut(s)	865
HpyAV	CCTTC	3 cut(s)	440, 771, 881
HpyCH4III	ACNGT	2 cut(s)	668, 707
HpyCH4IV	ACGT	3 cut(s)	89, 348, 863
HpyF10VI	GCNNNNNNNGC	6 cut(s)	62, 182, 253, 262, 498, 939
HpyF3I	CTNAG	1 cut(s)	969
HpySE526I	ACGT	3 cut(s)	89, 348, 863
Hsp92I	GRCGYC	2 cut(s)	247, 863
HspAI	GCGC	2 cut(s)	247, 477
KasI	GGCGCC	1 cut(s)	246
Kzo9I	GATC	2 cut(s)	46, 165
LmnI	GCTCC	5 cut(s)	42, 107, 691, 930, 952
Lsp1109I	GCAGC	6 cut(s)	77, 121, 252, 427, 929, 957
LweI	GCATC	2 cut(s)	464, 964
MaeI	CTAG	2 cut(s)	186, 269
MaeII	ACGT	3 cut(s)	89, 348, 863
MaeIII	GTNAC	5 cut(s)	70, 146, 621, 656, 742
MalI	GATC	2 cut(s)	48, 167
MboI	GATC	2 cut(s)	46, 165
MboII	GAAGA	3 cut(s)	41, 714, 948
MflI	RGATCY	1 cut(s)	165
MhlI	GDGCHC	2 cut(s)	688, 785
MluCI	AATT	4 cut(s)	202, 277, 313, 842
Mly113I	GGCGCC	1 cut(s)	247
MnlI	CCTC	8 cut(s)	173, 179, 231, 339, 388, 394, 641, 672
Mph1103I	ATGCAT	1 cut(s)	647
MseI	TTAA	3 cut(s)	101, 152, 200
MslI	CAYNNNNRTG	1 cut(s)	57
MspA1I	CMGCKG	2 cut(s)	68, 265
MspI	CCGG	5 cut(s)	111, 296, 740, 820, 849
MspR9I	CCNGG	6 cut(s)	419, 531, 588, 740, 820, 849
Mva1269I	GAATGC	2 cut(s)	299, 829
MvaI	CCWGG	3 cut(s)	419, 531, 588
MwoI	GCNNNNNNNGC	6 cut(s)	62, 182, 253, 262, 498, 939
NarI	GGCGCC	1 cut(s)	247
NciI	CCSGG	3 cut(s)	740, 820, 849
NdeII	GATC	2 cut(s)	46, 165
NheI	GCTAGC	2 cut(s)	185, 268
NlaIV	GGNNCC	4 cut(s)	109, 248, 535, 592
NmeAIII	GCCGAG	1 cut(s)	606
NmuCI	GTSAC	3 cut(s)	621, 656, 742
NsbI	TGCGCA	1 cut(s)	478
NsiI	ATGCAT	1 cut(s)	647
NspI	RCATGY	3 cut(s)	432, 649, 925
PaeI	GCATGC	1 cut(s)	649
PagI	TCATGA	1 cut(s)	333
PciI	ACATGT	1 cut(s)	921
PctI	GAATGC	2 cut(s)	299, 829
PfeI	GAWTC	4 cut(s)	366, 564, 671, 815
PflMI	CCANNNNNTGG	1 cut(s)	240
PfoI	TCCNGGA	1 cut(s)	818
PkrI	GCNGC	7 cut(s)	7, 67, 136, 267, 442, 944, 947
PluTI	GGCGCC	1 cut(s)	250
PscI	ACATGT	1 cut(s)	921
Psp6I	CCWGG	3 cut(s)	417, 529, 586
PspFI	CCCAGC	2 cut(s)	595, 676
PspGI	CCWGG	3 cut(s)	417, 529, 586
PspN4I	GGNNCC	4 cut(s)	109, 248, 535, 592
PspPI	GGNCC	4 cut(s)	524, 534, 797, 890
PstI	CTGCAG	3 cut(s)	445, 514, 947
PsuI	RGATCY	1 cut(s)	165
PvuII	CAGCTG	1 cut(s)	68
RsaI	GTAC	2 cut(s)	33, 637
RsaNI	GTAC	2 cut(s)	32, 636
RseI	CAYNNNNRTG	1 cut(s)	57
SaqAI	TTAA	3 cut(s)	101, 152, 200
SatI	GCNGC	7 cut(s)	6, 66, 135, 266, 441, 943, 946
Sau3AI	GATC	2 cut(s)	46, 165
Sau96I	GGNCC	4 cut(s)	524, 534, 797, 890
ScrFI	CCNGG	6 cut(s)	419, 531, 588, 740, 820, 849
SduI	GDGCHC	2 cut(s)	688, 785
SfaNI	GCATC	2 cut(s)	464, 964
SfcI	CTRYAG	3 cut(s)	441, 510, 943
SfoI	GGCGCC	1 cut(s)	248
SinI	GGWCC	2 cut(s)	534, 797
SmiMI	CAYNNNNRTG	1 cut(s)	57
SmlI	CTYRAG	1 cut(s)	834
SmoI	CTYRAG	1 cut(s)	834
SphI	GCATGC	1 cut(s)	649
Sse9I	AATT	4 cut(s)	202, 277, 313, 842
SsiI	CCGC	1 cut(s)	263
SspDI	GGCGCC	1 cut(s)	246
SspMI	CTAG	2 cut(s)	186, 269
StyD4I	CCNGG	6 cut(s)	417, 529, 586, 738, 818, 847
TaaI	ACNGT	2 cut(s)	668, 707
TaiI	ACGT	3 cut(s)	92, 351, 866
TasI	AATT	4 cut(s)	202, 277, 313, 842
TfiI	GAWTC	4 cut(s)	366, 564, 671, 815
Tru1I	TTAA	3 cut(s)	101, 152, 200
Tru9I	TTAA	3 cut(s)	101, 152, 200
TscAI	CASTG	3 cut(s)	257, 330, 965
TseFI	GTSAC	3 cut(s)	621, 656, 742
TseI	GCWGC	7 cut(s)	5, 65, 134, 265, 440, 942, 945
Tsp45I	GTSAC	3 cut(s)	621, 656, 742
TspDTI	ATGAA	4 cut(s)	41, 68, 641, 855
TspGWI	ACGGA	1 cut(s)	754
TspRI	CASTG	3 cut(s)	257, 330, 965
Van91I	CCANNNNNTGG	1 cut(s)	240
VneI	GTGCAC	1 cut(s)	781
VpaK11BI	GGWCC	2 cut(s)	534, 797
XapI	RAATTY	1 cut(s)	842
XceI	RCATGY	3 cut(s)	432, 649, 925
XspI	CTAG	2 cut(s)	186, 269
ZraI	GACGTC	1 cut(s)	864
Zsp2I	ATGCAT	1 cut(s)	647

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.