Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0011369

Physical Location & Seq

Genomic Coordinates Forward (+)

19155165 .. 19156751

Gene Structure 1587 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g20850.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGGATATTTTGATTGCGTACAGCTCCTACTTGATCTATCAAGCAAATGTGTCTGCTGTGACGTTTCATTACGGGACTTCTATGGATTTGATAGGAGCTGGAAGTTCTCCACTGCATTATGCTGCTTGTGGGGGTAACTTAAAGTGCTGTCAGATCCTCCTTGCAAGAGGTGCCAGCAAGACGACTTTAAACTGCACTGGGTGGCTTCCAGTTGATGTTGCCCGAATGTGGGGGCGCCACTGGCTTGAACCACTTCTAGCACCCAATTCTGACTCGACAATACCAGCGTTCCCCCTATCTAATTACCTATCCTTGCCTCTCATGAGCATACTGAATATAGCGAGGGAATGTGGATTTAAGTCCGTTACAACATCAACCGACGACACAGATACTTGTGCTGTCTGTCTGGAAAGACCATGTTCGGTAGCTGCAGAAGGCTGTAAGCATGAGCTTTGTGTAAGATGCGCACTCTATCTTTGCTCAACGAGCAACATACCTTCGGAAACGGTGGGCCCACCTGGGTCCATTCCATGCCCGCTTTGTAGGCACGGTATCATCTCCTTTGTCAAATTGCCTGGCTCCCCAGCAAAGGAAAATAGATTACAGATGTCACTTGGCCTTTGTACCCCTTGTATACTTCACCCTCGTGACCCAGAGCGTCTTTCTCCAGCTTGTGCACCAGAGATCCGAAAGAACCGTGTGGCTTCAGTTTCTTCGGATATGCTCTGTCCAGTTACATGCAGTCCATTTCCTTCTGTCACCATTCCTTTGTGCACGTGCAATGATGGACCATGCCCCTCATTTGAAACCCGGGAGGCAGAAACCCAAGATGAATTGCCCAGGCGGCCCCAAGCAACATCAGCAGACCAGGACAAGATGGAAGGGCCGAGACTTGGAAAAACAACATGTTCAAACATGTTTTGGAGCAGAAGGAGCTGCAGTAGGGAGCATCAGTGCAATGCCGAAATAAATGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank Ank_2 Ank_3 Ank_4 Ank_5

Protein Analysis

326

Amino Acids

35.21

Weight (kDa)

6.63

Isoelectric Point (pI)

56.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011369)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07270
fragaria_vesca	FvH4_7g29140
malus_domestica	MD01G1198300.v1.1 MD07G1266000.v1.1
prunus_persica	Prupe.2G291800_v2.0.a1 Prupe.2G291800_v2.0.a1 Prupe.2G291800_v2.0.a1 Prupe.2G291800_v2.0.a1 Prupe.2G291800_v2.0.a1
pyrus_communis	pycom01g20850 pycom07g24400
rosa_chinensis	RchiOBHm_Chr1g0376931
rosa_laevigata	RLG00000026559
rosa_multiflora	Rmu_ssc0000155.1_g000038
rosa_roxburghii	Rroxscaffold_4G00281630
rosa_rugosa	Rorug01G0399600
rosa_samantha	Rh1AG416800 Rh1BG376200 Rh1DG406800
rosa_wichuraiana	Rw1G036570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	466
AccB1I	GGYRCC	2 cut(s)	170, 234
AccI	GTMKAC	1 cut(s)	634
AciI	CCGC	2 cut(s)	536, 844
AclWI	GGATC	2 cut(s)	148, 679
AcuI	CTGAAG	1 cut(s)	690
AcvI	CACGTG	1 cut(s)	777
AcyI	GRCGYC	1 cut(s)	235
AdeI	CACNNNGTG	1 cut(s)	201
AfaI	GTAC	2 cut(s)	20, 625
AfiI	CCNNNNNNNGG	4 cut(s)	228, 229, 589, 893
AflIII	ACRYGT	2 cut(s)	905, 915
AgsI	TTSAA	3 cut(s)	248, 806, 912
AjnI	CCWGG	4 cut(s)	517, 574, 839, 867
AleI	CACNNNNGTG	1 cut(s)	645
AluBI	AGCT	6 cut(s)	24, 98, 428, 451, 671, 936
AluI	AGCT	6 cut(s)	24, 98, 428, 451, 671, 936
Alw21I	GWGCWC	2 cut(s)	679, 776
Alw26I	GTCTC	1 cut(s)	883
Alw44I	GTGCAC	2 cut(s)	675, 772
AlwI	GGATC	2 cut(s)	148, 679
Ama87I	CYCGRG	1 cut(s)	810
AoxI	GGCC	4 cut(s)	511, 616, 845, 884
ApaI	GGGCCC	1 cut(s)	515
ApaLI	GTGCAC	2 cut(s)	675, 772
ApeKI	GCWGC	3 cut(s)	122, 428, 936
Asp700I	GAANNNNTTC	1 cut(s)	252
AspLEI	GCGC	2 cut(s)	237, 467
AspS9I	GGNCC	6 cut(s)	511, 512, 522, 788, 846, 884
AsuC2I	CCSGG	2 cut(s)	811, 812
AsuHPI	GGTGA	2 cut(s)	632, 751
AvaI	CYCGRG	1 cut(s)	810
AvaII	GGWCC	2 cut(s)	522, 788
BaeGI	GKGCMC	3 cut(s)	515, 679, 776
BanI	GGYRCC	2 cut(s)	170, 234
BanII	GRGCYC	1 cut(s)	515
BauI	CACGAG	1 cut(s)	645
BbrPI	CACGTG	1 cut(s)	777
Bbv12I	GWGCWC	2 cut(s)	679, 776
BbvI	GCAGC	3 cut(s)	109, 415, 923
BccI	CCATC	2 cut(s)	779, 871
BcgI	CGANNNNNNTGC	1 cut(s)	953
BciT130I	CCWGG	4 cut(s)	519, 576, 841, 869
BcnI	CCSGG	2 cut(s)	811, 812
BcoDI	GTCTC	1 cut(s)	883
BfaI	CTAG	1 cut(s)	257
BfmI	CTRYAG	2 cut(s)	429, 937
BfoI	RGCGCY	1 cut(s)	238
BglI	GCCNNNNNGGC	1 cut(s)	844
BisI	GCNGC	4 cut(s)	123, 429, 845, 937
BlsI	GCNGC	4 cut(s)	124, 430, 846, 938
Bme1390I	CCNGG	6 cut(s)	519, 576, 811, 812, 841, 869
Bme18I	GGWCC	2 cut(s)	522, 788
BmeT110I	CYCGRG	1 cut(s)	810
BmgT120I	GGNCC	6 cut(s)	511, 512, 522, 788, 846, 884
BmiI	GGNNCC	6 cut(s)	172, 236, 513, 523, 580, 848
BmrFI	CCNGG	6 cut(s)	519, 576, 811, 812, 841, 869
BmrI	ACTGGG	1 cut(s)	207
BmsI	GCATC	2 cut(s)	452, 958
BmuI	ACTGGG	1 cut(s)	207
BpmI	CTGGAG	1 cut(s)	651
BpuMI	CCSGG	2 cut(s)	811, 812
BsaAI	YACGTR	1 cut(s)	777
BsaHI	GRCGYC	1 cut(s)	235
BsaJI	CCNNGG	3 cut(s)	518, 810, 839
BsaXI	ACNNNNNCTCC	4 cut(s)	925, 938, 955, 968
Bsc4I	CCNNNNNNNGG	4 cut(s)	228, 229, 589, 893
Bse1I	ACTGG	4 cut(s)	202, 209, 245, 731
Bse3DI	GCAATG	2 cut(s)	787, 964
BseBI	CCWGG	4 cut(s)	519, 576, 841, 869
BseDI	CCNNGG	3 cut(s)	518, 810, 839
BseLI	CCNNNNNNNGG	4 cut(s)	228, 229, 589, 893
BseMI	GCAATG	2 cut(s)	787, 964
BseNI	ACTGG	4 cut(s)	202, 209, 245, 731
BseSI	GKGCMC	3 cut(s)	515, 679, 776
BseXI	GCAGC	3 cut(s)	109, 415, 923
BseYI	CCCAGC	1 cut(s)	583
BsgI	GTGCAG	1 cut(s)	178
BshFI	GGCC	4 cut(s)	513, 618, 847, 886
BshNI	GGYRCC	2 cut(s)	170, 234
BsiHKAI	GWGCWC	2 cut(s)	679, 776
BsiHKCI	CYCGRG	1 cut(s)	810
BsiSI	CCGG	1 cut(s)	811
BslFI	GGGAC	1 cut(s)	88
BslI	CCNNNNNNNGG	4 cut(s)	228, 229, 589, 893
BsmAI	GTCTC	1 cut(s)	883
BsmFI	GGGAC	1 cut(s)	88
BsnI	GGCC	4 cut(s)	513, 618, 847, 886
BsoBI	CYCGRG	1 cut(s)	810
Bsp120I	GGGCCC	1 cut(s)	511
Bsp1286I	GDGCHC	3 cut(s)	515, 679, 776
Bsp143I	GATC	3 cut(s)	33, 153, 684
BspACI	CCGC	2 cut(s)	536, 844
BspANI	GGCC	4 cut(s)	513, 618, 847, 886
BspHI	TCATGA	1 cut(s)	321
BspLI	GGNNCC	6 cut(s)	172, 236, 513, 523, 580, 848
BspMAI	CTGCAG	2 cut(s)	433, 941
BspPI	GGATC	2 cut(s)	148, 679
BspT107I	GGYRCC	2 cut(s)	170, 234
BsrDI	GCAATG	2 cut(s)	787, 964
BsrI	ACTGG	4 cut(s)	202, 209, 245, 731
BssECI	CCNNGG	3 cut(s)	518, 810, 839
BssMI	GATC	3 cut(s)	33, 153, 684
BssNAI	GTATAC	1 cut(s)	635
BssNI	GRCGYC	1 cut(s)	235
BssSI	CACGAG	1 cut(s)	645
Bst1107I	GTATAC	1 cut(s)	635
Bst2BI	CACGAG	1 cut(s)	645
Bst2UI	CCWGG	4 cut(s)	519, 576, 841, 869
Bst4CI	ACNGT	3 cut(s)	508, 551, 698
BstACI	GRCGYC	1 cut(s)	235
BstAPI	GCANNNNNTGC	1 cut(s)	170
BstBAI	YACGTR	1 cut(s)	777
BstC8I	GCNNGC	2 cut(s)	175, 536
BstH2I	RGCGCY	1 cut(s)	238
BstHHI	GCGC	2 cut(s)	237, 467
BstKTI	GATC	3 cut(s)	36, 156, 687
BstMAI	GTCTC	1 cut(s)	883
BstMBI	GATC	3 cut(s)	33, 153, 684
BstMWI	GCNNNNNNNGC	7 cut(s)	170, 241, 486, 544, 844, 860, 933
BstNI	CCWGG	4 cut(s)	519, 576, 841, 869
BstNSI	RCATGY	3 cut(s)	741, 909, 919
BstSCI	CCNGG	6 cut(s)	517, 574, 809, 810, 839, 867
BstSFI	CTRYAG	2 cut(s)	429, 937
BstSLI	GKGCMC	3 cut(s)	515, 679, 776
BstV1I	GCAGC	3 cut(s)	109, 415, 923
BstX2I	RGATCY	2 cut(s)	153, 684
BstYI	RGATCY	2 cut(s)	153, 684
BstZ17I	GTATAC	1 cut(s)	635
BsuRI	GGCC	4 cut(s)	513, 618, 847, 886
BtsI	GCAGTG	1 cut(s)	110
BtsIMutI	CAGTG	4 cut(s)	110, 195, 238, 959
Cac8I	GCNNGC	2 cut(s)	175, 536
CciI	TCATGA	1 cut(s)	321
CfoI	GCGC	2 cut(s)	237, 467
Cfr13I	GGNCC	6 cut(s)	511, 512, 522, 788, 846, 884
Cfr9I	CCCGGG	1 cut(s)	810
CseI	GACGC	1 cut(s)	647
Csp6I	GTAC	2 cut(s)	19, 624
CviAII	CATG	8 cut(s)	322, 417, 446, 531, 738, 792, 906, 916
CviQI	GTAC	2 cut(s)	19, 624
DinI	GGCGCC	1 cut(s)	236
DpnI	GATC	3 cut(s)	35, 155, 686
DpnII	GATC	3 cut(s)	33, 153, 684
DraI	TTTAAA	1 cut(s)	189
DraIII	CACNNNGTG	1 cut(s)	201
Eco24I	GRGCYC	1 cut(s)	515
Eco47I	GGWCC	2 cut(s)	522, 788
Eco57I	CTGAAG	1 cut(s)	690
Eco72I	CACGTG	1 cut(s)	777
Eco88I	CYCGRG	1 cut(s)	810
EcoRII	CCWGG	4 cut(s)	517, 574, 839, 867
EcoT38I	GRGCYC	1 cut(s)	515
EgeI	GGCGCC	1 cut(s)	236
EheI	GGCGCC	1 cut(s)	236
FaeI	CATG	8 cut(s)	325, 420, 449, 534, 741, 795, 909, 919
FaqI	GGGAC	1 cut(s)	88
FatI	CATG	8 cut(s)	321, 416, 445, 530, 737, 791, 905, 915
FauI	CCCGC	1 cut(s)	543
FblI	GTMKAC	1 cut(s)	634
Fnu4HI	GCNGC	4 cut(s)	123, 429, 845, 937
FriOI	GRGCYC	1 cut(s)	515
Fsp4HI	GCNGC	4 cut(s)	123, 429, 845, 937
FspAI	RTGCGCAY	1 cut(s)	466
FspBI	CTAG	1 cut(s)	257
FspI	TGCGCA	1 cut(s)	466
GlaI	GCGC	2 cut(s)	236, 466
GluI	GCNGC	4 cut(s)	123, 429, 845, 937
GsaI	CCCAGC	1 cut(s)	587
GsuI	CTGGAG	1 cut(s)	651
HaeII	RGCGCY	1 cut(s)	238
HaeIII	GGCC	4 cut(s)	513, 618, 847, 886
HapII	CCGG	1 cut(s)	811
HgaI	GACGC	1 cut(s)	647
HhaI	GCGC	2 cut(s)	237, 467
Hin1I	GRCGYC	1 cut(s)	235
Hin1II	CATG	8 cut(s)	325, 420, 449, 534, 741, 795, 909, 919
Hin6I	GCGC	2 cut(s)	235, 465
HinP1I	GCGC	2 cut(s)	235, 465
HinfI	GANTC	1 cut(s)	272
HpaII	CCGG	1 cut(s)	811
HphI	GGTGA	2 cut(s)	632, 751
Hpy166II	GTNNAC	3 cut(s)	635, 677, 774
Hpy188I	TCNGA	5 cut(s)	153, 271, 502, 689, 718
Hpy188III	TCNNGA	3 cut(s)	322, 407, 647
Hpy8I	GTNNAC	3 cut(s)	635, 677, 774
Hpy99I	CGWCG	1 cut(s)	383
HpyAV	CCTTC	5 cut(s)	428, 507, 762, 875, 924
HpyCH4III	ACNGT	3 cut(s)	508, 551, 698
HpyCH4IV	ACGT	2 cut(s)	62, 776
HpyF10VI	GCNNNNNNNGC	7 cut(s)	170, 241, 486, 544, 844, 860, 933
HpySE526I	ACGT	2 cut(s)	62, 776
Hsp92I	GRCGYC	1 cut(s)	235
Hsp92II	CATG	8 cut(s)	325, 420, 449, 534, 741, 795, 909, 919
HspAI	GCGC	2 cut(s)	235, 465
KasI	GGCGCC	1 cut(s)	234
Kzo9I	GATC	3 cut(s)	33, 153, 684
LmnI	GCTCC	6 cut(s)	29, 95, 584, 924, 933, 946
Lsp1109I	GCAGC	3 cut(s)	109, 415, 923
LweI	GCATC	2 cut(s)	452, 958
MaeI	CTAG	1 cut(s)	257
MaeII	ACGT	2 cut(s)	62, 776
MaeIII	GTNAC	7 cut(s)	58, 134, 364, 609, 647, 733, 757
MalI	GATC	3 cut(s)	35, 155, 686
MboI	GATC	3 cut(s)	33, 153, 684
MboII	GAAGA	1 cut(s)	705
MflI	RGATCY	2 cut(s)	153, 684
MhlI	GDGCHC	3 cut(s)	515, 679, 776
MluCI	AATT	4 cut(s)	265, 301, 569, 833
Mly113I	GGCGCC	1 cut(s)	235
MlyI	GAGTC	1 cut(s)	266
MnlI	CCTC	7 cut(s)	161, 167, 327, 336, 654, 808, 808
MroXI	GAANNNNTTC	1 cut(s)	252
MseI	TTAA	4 cut(s)	140, 188, 357, 976
MslI	CAYNNNNRTG	1 cut(s)	645
MspI	CCGG	1 cut(s)	811
MspR9I	CCNGG	6 cut(s)	519, 576, 811, 812, 841, 869
MvaI	CCWGG	4 cut(s)	519, 576, 841, 869
MwoI	GCNNNNNNNGC	7 cut(s)	170, 241, 486, 544, 844, 860, 933
NarI	GGCGCC	1 cut(s)	235
NciI	CCSGG	2 cut(s)	811, 812
NdeII	GATC	3 cut(s)	33, 153, 684
NlaIII	CATG	8 cut(s)	325, 420, 449, 534, 741, 795, 909, 919
NlaIV	GGNNCC	6 cut(s)	172, 236, 513, 523, 580, 848
NmeAIII	GCCGAG	1 cut(s)	912
NmuCI	GTSAC	4 cut(s)	58, 609, 647, 757
NsbI	TGCGCA	1 cut(s)	466
NspI	RCATGY	3 cut(s)	741, 909, 919
OliI	CACNNNNGTG	1 cut(s)	645
PagI	TCATGA	1 cut(s)	321
PciI	ACATGT	2 cut(s)	905, 915
PdmI	GAANNNNTTC	1 cut(s)	252
PkrI	GCNGC	4 cut(s)	124, 430, 846, 938
PleI	GAGTC	1 cut(s)	266
PluTI	GGCGCC	1 cut(s)	238
PmaCI	CACGTG	1 cut(s)	777
PmlI	CACGTG	1 cut(s)	777
PpsI	GAGTC	1 cut(s)	266
Ppu21I	YACGTR	1 cut(s)	777
PscI	ACATGT	2 cut(s)	905, 915
Psp6I	CCWGG	4 cut(s)	517, 574, 839, 867
PspCI	CACGTG	1 cut(s)	777
PspFI	CCCAGC	1 cut(s)	583
PspGI	CCWGG	4 cut(s)	517, 574, 839, 867
PspN4I	GGNNCC	6 cut(s)	172, 236, 513, 523, 580, 848
PspOMI	GGGCCC	1 cut(s)	511
PspPI	GGNCC	6 cut(s)	511, 512, 522, 788, 846, 884
PstI	CTGCAG	2 cut(s)	433, 941
PsuI	RGATCY	2 cut(s)	153, 684
RsaI	GTAC	2 cut(s)	20, 625
RsaNI	GTAC	2 cut(s)	19, 624
RseI	CAYNNNNRTG	1 cut(s)	645
SaqAI	TTAA	4 cut(s)	140, 188, 357, 976
SatI	GCNGC	4 cut(s)	123, 429, 845, 937
Sau3AI	GATC	3 cut(s)	33, 153, 684
Sau96I	GGNCC	6 cut(s)	511, 512, 522, 788, 846, 884
SchI	GAGTC	1 cut(s)	266
ScrFI	CCNGG	6 cut(s)	519, 576, 811, 812, 841, 869
SduI	GDGCHC	3 cut(s)	515, 679, 776
SfaNI	GCATC	2 cut(s)	452, 958
SfcI	CTRYAG	2 cut(s)	429, 937
SfoI	GGCGCC	1 cut(s)	236
SinI	GGWCC	2 cut(s)	522, 788
SmaI	CCCGGG	1 cut(s)	812
SmiMI	CAYNNNNRTG	1 cut(s)	645
Sse9I	AATT	4 cut(s)	265, 301, 569, 833
SsiI	CCGC	2 cut(s)	536, 844
SspDI	GGCGCC	1 cut(s)	234
SspMI	CTAG	1 cut(s)	257
StyD4I	CCNGG	6 cut(s)	517, 574, 809, 810, 839, 867
TaaI	ACNGT	3 cut(s)	508, 551, 698
TaiI	ACGT	2 cut(s)	65, 779
TaqI	TCGA	1 cut(s)	275
TasI	AATT	4 cut(s)	265, 301, 569, 833
TauI	GCSGC	1 cut(s)	847
Tru1I	TTAA	4 cut(s)	140, 188, 357, 976
Tru9I	TTAA	4 cut(s)	140, 188, 357, 976
TscAI	CASTG	4 cut(s)	117, 202, 245, 959
TseFI	GTSAC	4 cut(s)	58, 609, 647, 757
TseI	GCWGC	3 cut(s)	122, 428, 936
Tsp45I	GTSAC	4 cut(s)	58, 609, 647, 757
TspDTI	ATGAA	2 cut(s)	56, 846
TspGWI	ACGGA	1 cut(s)	352
TspMI	CCCGGG	1 cut(s)	810
TspRI	CASTG	4 cut(s)	117, 202, 245, 959
VneI	GTGCAC	2 cut(s)	675, 772
VpaK11BI	GGWCC	2 cut(s)	522, 788
XceI	RCATGY	3 cut(s)	741, 909, 919
XmaI	CCCGGG	1 cut(s)	810
XmiI	GTMKAC	1 cut(s)	634
XmnI	GAANNNNTTC	1 cut(s)	252
XspI	CTAG	1 cut(s)	257

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.