Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0014178

Physical Location & Seq

Genomic Coordinates Forward (+)

28697766 .. 28700789

Gene Structure 3024 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G296100.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

ATGGAGCCCCTCTGGAAGCTTTTGTATTTGCTGGAGCCTGCACCTATTTCTCTAATTGTAACAGCAGTAGGTGTGACTTTTGGATCTGCATTTCGTGCTCTTAATTATGGGAAAGAAATGGAGAGAAATCGTGATTTATCAGAAACATCGATTACATTAGATAGGTCCCAAGCTCTCATGATCCCAGTAATGAGCTCTATAAGCTTGCTTTTGATGTTCTACCTGTTCTCTTCTGTCTCACAACTCCTCACTGTATTCACAGCCATTGCCTCTGTATCCTCCCTATTTTTCTGCCTATCTCCTTATGTAGCCTATTTGAAGTCACAATTTGGTTTTGCTGACCCATATGTGTCAAGGTGTTGTTCCAAGTCATTTACACGAATCCAAGGGCTGTTACTGTTCTTATGCATTGGTACGGTTGTTGCTTGGCTTGTTACTGGACATTGGGTATTGAACAATTTGTTGGGCATTTCCATATGCATTGCATTTGTGAGTCATGTCCGTCTTCCGAACATCAAAATCTGTGCAATGCTCCTCGTCTGCCTATTCGTATATGACATATTCTGGGTTTTTTTCTCCGAGAGGTTTTTCGGGGCGAATGTCATGGTATCAGTGGCAACACAACAAGCTTCAAACCCTGTTCACACTGTTGCAAATAGTTTGAGCCTGCCTGGGCTGCAAATGGTAACAAAGAAGTTGGAATTGCCGGTGAAGATTGTGTTTCCCAGGAACTTATTGGGTGGACTGATTCCTGGAGGAGCCAAAGACTTCATGATGCTTGGTCTCGGTGACATGGCAATTCCTGCTATGCTTCTGGCATTAGTCCTATGTTTTGATCATCGAAGGAGCAGGGATTCGATAAACCTGTTAGAAATGCATTCCTCCAAGGGGCACAAATATATTTGGTATGCCCTTCCCGGATATGCCATTGGACTGGTTACTGCTTTAGCAGCTGGCGTTCTGACCCACTCACCTCAACCTGCTCTTCTTTATCTTGTGCCTTCTACGTTGGGACCAATTGTTTTCATATCTTGGATAAGGAAGGAACTAGCAGAGCTATGGGATGGACCCTTGCCAAACTCAAACGATAAAGCTCACCAGATAGAAGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005765 GO:0005768 GO:0005773 GO:0005774 GO:0005783 GO:0005789 GO:0005794 GO:0005798 GO:0005802 GO:0012505 GO:0016020 GO:0016021 GO:0030176 GO:0030660 GO:0031090 GO:0031224 GO:0031227 GO:0031410 GO:0031982 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044433 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0071458 GO:0071556 GO:0097708 GO:0098552 GO:0098553 GO:0098554 GO:0098562 GO:0098588 GO:0098791 GO:0098805 GO:0098827 GO:0098852

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_A22B

Protein Analysis

371

Amino Acids

40.89

Weight (kDa)

8.73

Isoelectric Point (pI)

38.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014178)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33410
fragaria_vesca	FvH4_7g29650
malus_domestica	MD01G1203500.v1.1 MD07G1272800.v1.1
prunus_persica	Prupe.2G296100_v2.0.a1 Prupe.2G296100_v2.0.a1
pyrus_communis	pycom01g21260 pycom07g24920
rosa_chinensis	RchiOBHm_Chr1g0377661
rosa_laevigata	RLG00000026507
rosa_rugosa	Rorug01G0404000 Rorug01G0404100
rosa_samantha	Rh1AG428400 Rh1BG380900 Rh1CG394900 Rh1DG411900
rosa_wichuraiana	Rw1G037030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	988
AclWI	GGATC	2 cut(s)	91, 175
AfaI	GTAC	1 cut(s)	415
AfiI	CCNNNNNNNGG	1 cut(s)	888
AgsI	TTSAA	3 cut(s)	319, 454, 633
AjnI	CCWGG	3 cut(s)	670, 725, 751
AjuI	GAANNNNNNNTTGG	2 cut(s)	446, 478
AluBI	AGCT	8 cut(s)	19, 173, 195, 204, 629, 953, 1057, 1094
AluI	AGCT	8 cut(s)	19, 173, 195, 204, 629, 953, 1057, 1094
Alw21I	GWGCWC	2 cut(s)	100, 197
Alw26I	GTCTC	2 cut(s)	241, 788
AlwI	GGATC	2 cut(s)	91, 175
ApeKI	GCWGC	2 cut(s)	676, 950
AspS9I	GGNCC	3 cut(s)	165, 1013, 1067
AsuC2I	CCSGG	1 cut(s)	918
AsuHPI	GGTGA	4 cut(s)	721, 800, 963, 1088
AvaII	GGWCC	3 cut(s)	165, 1013, 1067
BaeGI	GKGCMC	1 cut(s)	894
BaeI	ACNNNNGTAYC	2 cut(s)	405, 438
BanII	GRGCYC	2 cut(s)	9, 197
BbsI	GAAGAC	1 cut(s)	497
Bbv12I	GWGCWC	2 cut(s)	100, 197
BbvI	GCAGC	2 cut(s)	663, 962
BccI	CCATC	1 cut(s)	1058
BciT130I	CCWGG	3 cut(s)	672, 727, 753
BciVI	GTATCC	1 cut(s)	286
BclI	TGATCA	1 cut(s)	835
BcnI	CCSGG	1 cut(s)	918
BcoDI	GTCTC	2 cut(s)	241, 788
BfaI	CTAG	1 cut(s)	1049
BfuAI	ACCTGC	1 cut(s)	988
BfuI	GTATCC	1 cut(s)	286
BisI	GCNGC	2 cut(s)	677, 951
BlsI	GCNGC	2 cut(s)	678, 952
Bme1390I	CCNGG	4 cut(s)	672, 727, 753, 918
Bme18I	GGWCC	3 cut(s)	165, 1013, 1067
BmgT120I	GGNCC	3 cut(s)	165, 1013, 1067
BmiI	GGNNCC	6 cut(s)	6, 36, 167, 760, 1014, 1069
BmrFI	CCNGG	4 cut(s)	672, 727, 753, 918
BmrI	ACTGGG	1 cut(s)	179
BmsI	GCATC	1 cut(s)	765
BmuI	ACTGGG	1 cut(s)	179
BpiI	GAAGAC	1 cut(s)	497
BpmI	CTGGAG	2 cut(s)	53, 774
BpuMI	CCSGG	1 cut(s)	918
Bsa29I	ATCGAT	1 cut(s)	149
BsaI	GGTCTC	1 cut(s)	788
BsaJI	CCNNGG	4 cut(s)	385, 671, 725, 885
Bsc4I	CCNNNNNNNGG	1 cut(s)	888
Bse118I	RCCGGY	1 cut(s)	706
Bse1I	ACTGG	3 cut(s)	185, 442, 939
Bse3DI	GCAATG	3 cut(s)	264, 480, 534
BseBI	CCWGG	3 cut(s)	672, 727, 753
BseCI	ATCGAT	1 cut(s)	149
BseDI	CCNNGG	4 cut(s)	385, 671, 725, 885
BseGI	GGATG	1 cut(s)	1069
BseLI	CCNNNNNNNGG	1 cut(s)	888
BseMI	GCAATG	3 cut(s)	264, 480, 534
BseNI	ACTGG	3 cut(s)	185, 442, 939
BseRI	GAGGAG	3 cut(s)	236, 524, 771
BseSI	GKGCMC	1 cut(s)	894
BseXI	GCAGC	2 cut(s)	663, 962
BsgI	GTGCAG	1 cut(s)	24
BshVI	ATCGAT	1 cut(s)	149
BsiHKAI	GWGCWC	2 cut(s)	100, 197
BsiSI	CCGG	2 cut(s)	707, 918
BslFI	GGGAC	2 cut(s)	151, 1026
BslI	CCNNNNNNNGG	1 cut(s)	888
BsmAI	GTCTC	2 cut(s)	241, 788
BsmFI	GGGAC	2 cut(s)	151, 1026
BsmI	GAATGC	1 cut(s)	877
Bso31I	GGTCTC	1 cut(s)	788
Bsp1286I	GDGCHC	4 cut(s)	9, 100, 197, 894
Bsp143I	GATC	3 cut(s)	83, 180, 835
BspDI	ATCGAT	1 cut(s)	149
BspHI	TCATGA	2 cut(s)	177, 771
BspLI	GGNNCC	6 cut(s)	6, 36, 167, 760, 1014, 1069
BspMI	ACCTGC	1 cut(s)	988
BspPI	GGATC	2 cut(s)	91, 175
BspQI	GCTCTTC	1 cut(s)	990
BspTNI	GGTCTC	1 cut(s)	788
BsrDI	GCAATG	3 cut(s)	264, 480, 534
BsrFI	RCCGGY	1 cut(s)	706
BsrI	ACTGG	3 cut(s)	185, 442, 939
BssAI	RCCGGY	1 cut(s)	706
BssECI	CCNNGG	4 cut(s)	385, 671, 725, 885
BssMI	GATC	3 cut(s)	83, 180, 835
BssT1I	CCWWGG	2 cut(s)	385, 885
Bst2UI	CCWGG	3 cut(s)	672, 727, 753
Bst4CI	ACNGT	4 cut(s)	253, 399, 418, 649
Bst6I	CTCTTC	2 cut(s)	235, 990
BstAPI	GCANNNNNTGC	2 cut(s)	95, 803
BstC8I	GCNNGC	4 cut(s)	39, 206, 668, 955
BstF5I	GGATG	1 cut(s)	1069
BstKTI	GATC	3 cut(s)	86, 183, 838
BstMAI	GTCTC	2 cut(s)	241, 788
BstMBI	GATC	3 cut(s)	83, 180, 835
BstMWI	GCNNNNNNNGC	5 cut(s)	95, 201, 676, 803, 950
BstNI	CCWGG	3 cut(s)	672, 727, 753
BstSCI	CCNGG	4 cut(s)	670, 725, 751, 916
BstSLI	GKGCMC	1 cut(s)	894
BstV1I	GCAGC	2 cut(s)	663, 962
BstV2I	GAAGAC	1 cut(s)	497
BstX2I	RGATCY	1 cut(s)	83
BstXI	CCANNNNNNTGG	1 cut(s)	934
BstYI	RGATCY	1 cut(s)	83
Bsu15I	ATCGAT	1 cut(s)	149
BsuI	GTATCC	1 cut(s)	286
BsuTUI	ATCGAT	1 cut(s)	149
BtsCI	GGATG	1 cut(s)	1069
BtsIMutI	CAGTG	3 cut(s)	249, 618, 645
BveI	ACCTGC	1 cut(s)	988
Cac8I	GCNNGC	4 cut(s)	39, 206, 668, 955
CciI	TCATGA	2 cut(s)	177, 771
Cfr10I	RCCGGY	1 cut(s)	706
Cfr13I	GGNCC	3 cut(s)	165, 1013, 1067
ClaI	ATCGAT	1 cut(s)	149
Csp6I	GTAC	1 cut(s)	414
CviAII	CATG	5 cut(s)	178, 497, 604, 772, 793
CviQI	GTAC	1 cut(s)	414
DpnI	GATC	3 cut(s)	85, 182, 837
DpnII	GATC	3 cut(s)	83, 180, 835
Eam1104I	CTCTTC	2 cut(s)	235, 990
EarI	CTCTTC	2 cut(s)	235, 990
Ecl136II	GAGCTC	1 cut(s)	195
Eco130I	CCWWGG	2 cut(s)	385, 885
Eco24I	GRGCYC	2 cut(s)	9, 197
Eco31I	GGTCTC	1 cut(s)	788
Eco47I	GGWCC	3 cut(s)	165, 1013, 1067
Eco53kI	GAGCTC	1 cut(s)	195
EcoICRI	GAGCTC	1 cut(s)	195
EcoO109I	RGGNCCY	1 cut(s)	165
EcoRII	CCWGG	3 cut(s)	670, 725, 751
EcoT14I	CCWWGG	2 cut(s)	385, 885
EcoT22I	ATGCAT	3 cut(s)	410, 482, 879
EcoT38I	GRGCYC	2 cut(s)	9, 197
ErhI	CCWWGG	2 cut(s)	385, 885
FaeI	CATG	5 cut(s)	181, 500, 607, 775, 796
FaqI	GGGAC	2 cut(s)	151, 1026
FatI	CATG	5 cut(s)	177, 496, 603, 771, 792
FauNDI	CATATG	2 cut(s)	346, 476
FbaI	TGATCA	1 cut(s)	835
Fnu4HI	GCNGC	2 cut(s)	677, 951
FokI	GGATG	1 cut(s)	1076
FriOI	GRGCYC	2 cut(s)	9, 197
Fsp4HI	GCNGC	2 cut(s)	677, 951
FspBI	CTAG	1 cut(s)	1049
GluI	GCNGC	2 cut(s)	677, 951
GsuI	CTGGAG	2 cut(s)	53, 774
HapII	CCGG	2 cut(s)	707, 918
Hin1II	CATG	5 cut(s)	181, 500, 607, 775, 796
HindIII	AAGCTT	3 cut(s)	17, 202, 627
HinfI	GANTC	4 cut(s)	381, 493, 748, 854
HpaII	CCGG	2 cut(s)	707, 918
HphI	GGTGA	4 cut(s)	721, 800, 963, 1088
Hpy166II	GTNNAC	2 cut(s)	643, 743
Hpy188I	TCNGA	4 cut(s)	142, 510, 580, 963
Hpy188III	TCNNGA	4 cut(s)	13, 131, 178, 772
Hpy8I	GTNNAC	2 cut(s)	643, 743
HpyAV	CCTTC	4 cut(s)	837, 923, 1011, 1036
HpyCH4III	ACNGT	4 cut(s)	253, 399, 418, 649
HpyCH4IV	ACGT	1 cut(s)	1007
HpyCH4V	TGCA	9 cut(s)	41, 89, 408, 480, 485, 527, 653, 679, 877
HpyF10VI	GCNNNNNNNGC	5 cut(s)	95, 201, 676, 803, 950
HpySE526I	ACGT	1 cut(s)	1007
Hsp92II	CATG	5 cut(s)	181, 500, 607, 775, 796
Ksp22I	TGATCA	1 cut(s)	835
Kzo9I	GATC	3 cut(s)	83, 180, 835
LguI	GCTCTTC	1 cut(s)	990
LmnI	GCTCC	5 cut(s)	4, 34, 537, 758, 846
Lsp1109I	GCAGC	2 cut(s)	663, 962
LweI	GCATC	1 cut(s)	765
MaeI	CTAG	1 cut(s)	1049
MaeII	ACGT	1 cut(s)	1007
MaeIII	GTNAC	8 cut(s)	58, 73, 321, 393, 433, 685, 788, 937
MalI	GATC	3 cut(s)	85, 182, 837
MboI	GATC	3 cut(s)	83, 180, 835
MboII	GAAGA	4 cut(s)	222, 497, 724, 977
MfeI	CAATTG	1 cut(s)	1017
MflI	RGATCY	1 cut(s)	83
MhlI	GDGCHC	4 cut(s)	9, 100, 197, 894
MluCI	AATT	7 cut(s)	54, 103, 326, 457, 701, 798, 1017
MlyI	GAGTC	1 cut(s)	502
MmeI	TCCRAC	1 cut(s)	678
MnlI	CCTC	9 cut(s)	20, 257, 280, 289, 545, 576, 749, 892, 984
Mph1103I	ATGCAT	3 cut(s)	410, 482, 879
MseI	TTAA	1 cut(s)	102
MspA1I	CMGCKG	1 cut(s)	953
MspI	CCGG	2 cut(s)	707, 918
MspR9I	CCNGG	4 cut(s)	672, 727, 753, 918
MunI	CAATTG	1 cut(s)	1017
Mva1269I	GAATGC	1 cut(s)	877
MvaI	CCWGG	3 cut(s)	672, 727, 753
MwoI	GCNNNNNNNGC	5 cut(s)	95, 201, 676, 803, 950
NciI	CCSGG	1 cut(s)	918
NdeI	CATATG	2 cut(s)	346, 476
NdeII	GATC	3 cut(s)	83, 180, 835
NlaIII	CATG	5 cut(s)	181, 500, 607, 775, 796
NlaIV	GGNNCC	6 cut(s)	6, 36, 167, 760, 1014, 1069
NmuCI	GTSAC	3 cut(s)	73, 321, 788
NsiI	ATGCAT	3 cut(s)	410, 482, 879
PagI	TCATGA	2 cut(s)	177, 771
PciSI	GCTCTTC	1 cut(s)	990
PctI	GAATGC	1 cut(s)	877
PfeI	GAWTC	3 cut(s)	381, 748, 854
PfoI	TCCNGGA	2 cut(s)	751, 916
PkrI	GCNGC	2 cut(s)	678, 952
PleI	GAGTC	1 cut(s)	501
PpsI	GAGTC	1 cut(s)	501
PpuMI	RGGWCCY	1 cut(s)	165
Psp124BI	GAGCTC	1 cut(s)	197
Psp5II	RGGWCCY	1 cut(s)	165
Psp6I	CCWGG	3 cut(s)	670, 725, 751
PspGI	CCWGG	3 cut(s)	670, 725, 751
PspN4I	GGNNCC	6 cut(s)	6, 36, 167, 760, 1014, 1069
PspPI	GGNCC	3 cut(s)	165, 1013, 1067
PspPPI	RGGWCCY	1 cut(s)	165
PsuI	RGATCY	1 cut(s)	83
PvuII	CAGCTG	1 cut(s)	953
RsaI	GTAC	1 cut(s)	415
RsaNI	GTAC	1 cut(s)	414
SacI	GAGCTC	1 cut(s)	197
SapI	GCTCTTC	1 cut(s)	990
SaqAI	TTAA	1 cut(s)	102
SatI	GCNGC	2 cut(s)	677, 951
Sau3AI	GATC	3 cut(s)	83, 180, 835
Sau96I	GGNCC	3 cut(s)	165, 1013, 1067
SchI	GAGTC	1 cut(s)	502
ScrFI	CCNGG	4 cut(s)	672, 727, 753, 918
SduI	GDGCHC	4 cut(s)	9, 100, 197, 894
SfaNI	GCATC	1 cut(s)	765
SinI	GGWCC	3 cut(s)	165, 1013, 1067
Sse9I	AATT	7 cut(s)	54, 103, 326, 457, 701, 798, 1017
SspMI	CTAG	1 cut(s)	1049
SstI	GAGCTC	1 cut(s)	197
StyD4I	CCNGG	4 cut(s)	670, 725, 751, 916
StyI	CCWWGG	2 cut(s)	385, 885
TaaI	ACNGT	4 cut(s)	253, 399, 418, 649
TaiI	ACGT	1 cut(s)	1010
TaqI	TCGA	3 cut(s)	149, 841, 857
TasI	AATT	7 cut(s)	54, 103, 326, 457, 701, 798, 1017
TfiI	GAWTC	3 cut(s)	381, 748, 854
Tru1I	TTAA	1 cut(s)	102
Tru9I	TTAA	1 cut(s)	102
TscAI	CASTG	3 cut(s)	256, 618, 652
TseFI	GTSAC	3 cut(s)	73, 321, 788
TseI	GCWGC	2 cut(s)	676, 950
Tsp45I	GTSAC	3 cut(s)	73, 321, 788
TspDTI	ATGAA	2 cut(s)	760, 1015
TspGWI	ACGGA	1 cut(s)	491
TspRI	CASTG	3 cut(s)	256, 618, 652
VpaK11BI	GGWCC	3 cut(s)	165, 1013, 1067
XcmI	CCANNNNNNNNNTGG	1 cut(s)	733
XspI	CTAG	1 cut(s)	1049
Zsp2I	ATGCAT	3 cut(s)	410, 482, 879

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.