Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0014178

Physical Location & Seq

Genomic Coordinates Forward (+)

51141458 .. 51142567

Gene Structure 1110 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0404100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGGACAAGAAGTCGAAGGTGTTGATGCAGAAGTTCAAAGTTCAGAAACTTTTAGGGCAAGGTAACTTTGCAAAGGTCTATAGCGCAACGAACCTTGAAACCAATCAGAGTGTAGCCATTAAGGTAATCAGCAAAGACATGGTTGTCAAAACTGGACTGATTGATCAGACCAAAAGAGAGATTACTGCTATGAGATTGCTTAAACACCCAAACATAGTGCAGCTATATGAAGTCATGGCCTCCAAAGCCAAGATCTACCTCATCATGGAATACGCAAAAGGTGGTGAGCTTTTTCAAAAGATAAAGAACGGAAGGCTCAAGGAGGAAGTTGCATGGAATTACTTCCAACAGCTCATCACTGCTGTTGATTTCTGCCACAAAAGAGGTGTTTACCACCGCGATTTGAAGCCCGAGAACTTGCTGCTAGATGAAAATGGAGTGTTGAAGGTATCAGATTTTGGTTTGAGTGCACTTGCTGAGTCGAAGAGGGAAGATGGTTTACTACATACAAATTGTGGCACTCCTTCTCATGTAGCTCCTGAAGTAATCCGCTGTAGAGCCTATGATGGAGCTAAAGCTGATATATGGTCTTGTGGGGTGATCTTGTTTGCACTATTGGCTGGTTATCTTCCCTTCCATGATTCAAATCTAATACATATGTATAAAAAAGTATGTGCATCAGAGTATCAATGTCCCAGGTGGTTTTCGCGTCACGTGAGAAAGCTCTTGCATGGAATCCTCAACCCTATTCCGGATCAAAGGTTTCTTGCTTCGGAGATTATGGAAAGTAGCTGGTTTCAGAAAGGGCTCAACTCCAATTCCATAACAGTAGTGGAAGAGCCAGGTTCGTTGAATGCTGATGGGGGGTGTGATGACTGTGACAGCGAGAACCAAGAGATTATTACACCCACCACTTTGACTGCTTTCGATTTCATATCTCTTGCAAGTGGACTTGATTTATCTGGCTTGATGATGCAAAAGGATTCAAAGAAAGCAGTGCACTTCACATCAGCGCAATCTGCCACATCCATCATGTCGAAGCTGAGGGAGATTACTCGGAAACTGAAGCTGAAAGTGAAGAAAGAAGGAGCATCACTGAATTGTTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005765 GO:0005768 GO:0005773 GO:0005774 GO:0005783 GO:0005789 GO:0005794 GO:0005798 GO:0005802 GO:0012505 GO:0016020 GO:0016021 GO:0030176 GO:0030660 GO:0031090 GO:0031224 GO:0031227 GO:0031410 GO:0031982 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044433 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0071458 GO:0071556 GO:0097708 GO:0098552 GO:0098553 GO:0098554 GO:0098562 GO:0098588 GO:0098791 GO:0098805 GO:0098827 GO:0098852

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_A22B

Protein Analysis

369

Amino Acids

41.46

Weight (kDa)

9.02

Isoelectric Point (pI)

27.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	12 - 266	6.7e-73	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	13 - 262	2e-39	Protein tyrosine and serine/threonine kinase
NAF	PF03822	303 - 361	1e-16	NAF domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014178)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33410
fragaria_vesca	FvH4_7g29650
malus_domestica	MD01G1203500.v1.1 MD07G1272800.v1.1
prunus_persica	Prupe.2G296100_v2.0.a1 Prupe.2G296100_v2.0.a1
pyrus_communis	pycom01g21260 pycom07g24920
rosa_chinensis	RchiOBHm_Chr1g0377661
rosa_laevigata	RLG00000026507
rosa_rugosa	Rorug01G0404000 Rorug01G0404100
rosa_samantha	Rh1AG428400 Rh1BG380900 Rh1CG394900 Rh1DG411900
rosa_wichuraiana	Rw1G037030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	143
AccII	CGCG	2 cut(s)	399, 709
AccIII	TCCGGA	1 cut(s)	751
AciI	CCGC	2 cut(s)	397, 550
AclWI	GGATC	1 cut(s)	762
AcuI	CTGAAG	2 cut(s)	561, 1085
AcvI	CACGTG	1 cut(s)	715
AfiI	CCNNNNNNNGG	2 cut(s)	265, 751
AgsI	TTSAA	8 cut(s)	37, 98, 296, 406, 445, 645, 853, 987
AhdI	GACNNNNNGTC	1 cut(s)	10
AjnI	CCWGG	2 cut(s)	695, 841
Alw21I	GWGCWC	2 cut(s)	472, 1002
Alw44I	GTGCAC	2 cut(s)	468, 998
AlwI	GGATC	1 cut(s)	762
Ama87I	CYCGRG	1 cut(s)	410
Aor13HI	TCCGGA	1 cut(s)	751
AoxI	GGCC	1 cut(s)	237
ApaLI	GTGCAC	2 cut(s)	468, 998
ApeKI	GCWGC	2 cut(s)	220, 421
Asp700I	GAANNNNTTC	1 cut(s)	341
AspLEI	GCGC	2 cut(s)	86, 1015
AsuHPI	GGTGA	2 cut(s)	296, 610
AvaI	CYCGRG	1 cut(s)	410
BaeGI	GKGCMC	2 cut(s)	472, 1002
BanII	GRGCYC	1 cut(s)	810
BarI	GAAGNNNNNNTAC	2 cut(s)	483, 515
BbrPI	CACGTG	1 cut(s)	715
Bbv12I	GWGCWC	2 cut(s)	472, 1002
BbvCI	CCTCAGC	1 cut(s)	1043
BbvI	GCAGC	2 cut(s)	232, 408
BccI	CCATC	4 cut(s)	488, 560, 854, 1037
BciT130I	CCWGG	2 cut(s)	697, 843
BclI	TGATCA	1 cut(s)	163
BfaI	CTAG	1 cut(s)	425
BfmI	CTRYAG	2 cut(s)	79, 553
BglII	AGATCT	1 cut(s)	252
BisI	GCNGC	2 cut(s)	221, 422
BlsI	GCNGC	2 cut(s)	222, 423
Bme1390I	CCNGG	2 cut(s)	697, 843
BmeRI	GACNNNNNGTC	1 cut(s)	10
BmeT110I	CYCGRG	1 cut(s)	410
BmrFI	CCNGG	2 cut(s)	697, 843
BmsI	GCATC	4 cut(s)	15, 686, 963, 1100
Bpu10I	CCTNAGC	1 cut(s)	1043
BpuEI	CTTGAG	1 cut(s)	302
BsaAI	YACGTR	1 cut(s)	715
BsaBI	GATNNNNATC	1 cut(s)	645
BsaJI	CCNNGG	1 cut(s)	695
BsaWI	WCCGGW	1 cut(s)	751
Bsc4I	CCNNNNNNNGG	2 cut(s)	265, 751
Bse1I	ACTGG	1 cut(s)	157
Bse8I	GATNNNNATC	1 cut(s)	645
BseAI	TCCGGA	1 cut(s)	751
BseBI	CCWGG	2 cut(s)	697, 843
BseDI	CCNNGG	1 cut(s)	695
BseGI	GGATG	1 cut(s)	1025
BseJI	GATNNNNATC	1 cut(s)	645
BseLI	CCNNNNNNNGG	2 cut(s)	265, 751
BseMII	CTCAG	2 cut(s)	468, 1034
BseNI	ACTGG	1 cut(s)	157
BseSI	GKGCMC	2 cut(s)	472, 1002
BseXI	GCAGC	2 cut(s)	232, 408
BsgI	GTGCAG	1 cut(s)	239
Bsh1236I	CGCG	2 cut(s)	399, 709
BshFI	GGCC	1 cut(s)	239
BsiHKAI	GWGCWC	2 cut(s)	472, 1002
BsiHKCI	CYCGRG	1 cut(s)	410
BsiSI	CCGG	1 cut(s)	752
BslFI	GGGAC	1 cut(s)	678
BslI	CCNNNNNNNGG	2 cut(s)	265, 751
BsmFI	GGGAC	1 cut(s)	678
BsmI	GAATGC	1 cut(s)	859
BsnI	GGCC	1 cut(s)	239
BsoBI	CYCGRG	1 cut(s)	410
Bsp1286I	GDGCHC	3 cut(s)	472, 810, 1002
Bsp13I	TCCGGA	1 cut(s)	751
Bsp143I	GATC	4 cut(s)	163, 252, 600, 754
BspACI	CCGC	2 cut(s)	397, 550
BspANI	GGCC	1 cut(s)	239
BspCNI	CTCAG	2 cut(s)	469, 1035
BspEI	TCCGGA	1 cut(s)	751
BspFNI	CGCG	2 cut(s)	399, 709
BspPI	GGATC	1 cut(s)	762
BspQI	GCTCTTC	1 cut(s)	831
BsrI	ACTGG	1 cut(s)	157
BssECI	CCNNGG	1 cut(s)	695
BssMI	GATC	4 cut(s)	163, 252, 600, 754
Bst2UI	CCWGG	2 cut(s)	697, 843
Bst4CI	ACNGT	2 cut(s)	829, 878
Bst6I	CTCTTC	2 cut(s)	479, 831
BstBAI	YACGTR	1 cut(s)	715
BstDEI	CTNAG	2 cut(s)	477, 1043
BstF5I	GGATG	1 cut(s)	1025
BstFNI	CGCG	2 cut(s)	399, 709
BstHHI	GCGC	2 cut(s)	86, 1015
BstKTI	GATC	4 cut(s)	166, 255, 603, 757
BstMBI	GATC	4 cut(s)	163, 252, 600, 754
BstMWI	GCNNNNNNNGC	3 cut(s)	245, 617, 1019
BstNI	CCWGG	2 cut(s)	697, 843
BstSCI	CCNGG	2 cut(s)	695, 841
BstSFI	CTRYAG	2 cut(s)	79, 553
BstSLI	GKGCMC	2 cut(s)	472, 1002
BstUI	CGCG	2 cut(s)	399, 709
BstV1I	GCAGC	2 cut(s)	232, 408
BstX2I	RGATCY	1 cut(s)	252
BstYI	RGATCY	1 cut(s)	252
BsuRI	GGCC	1 cut(s)	239
BtsCI	GGATG	1 cut(s)	1025
BtsI	GCAGTG	2 cut(s)	357, 1002
BtsIMutI	CAGTG	3 cut(s)	357, 1002, 1094
CfoI	GCGC	2 cut(s)	86, 1015
CseI	GACGC	1 cut(s)	698
CviAII	CATG	8 cut(s)	139, 235, 265, 333, 530, 638, 731, 1033
DdeI	CTNAG	2 cut(s)	477, 1043
DpnI	GATC	4 cut(s)	165, 254, 602, 756
DpnII	GATC	4 cut(s)	163, 252, 600, 754
DrdI	GACNNNNNNGTC	1 cut(s)	143
DriI	GACNNNNNGTC	1 cut(s)	10
DseDI	GACNNNNNNGTC	1 cut(s)	143
Eam1104I	CTCTTC	2 cut(s)	479, 831
Eam1105I	GACNNNNNGTC	1 cut(s)	10
EarI	CTCTTC	2 cut(s)	479, 831
Eco24I	GRGCYC	1 cut(s)	810
Eco57I	CTGAAG	2 cut(s)	561, 1085
Eco72I	CACGTG	1 cut(s)	715
Eco88I	CYCGRG	1 cut(s)	410
EcoRII	CCWGG	2 cut(s)	695, 841
EcoT38I	GRGCYC	1 cut(s)	810
FaeI	CATG	8 cut(s)	142, 238, 268, 336, 533, 641, 734, 1036
FaqI	GGGAC	1 cut(s)	678
FatI	CATG	8 cut(s)	138, 234, 264, 332, 529, 637, 730, 1032
FauNDI	CATATG	1 cut(s)	657
FbaI	TGATCA	1 cut(s)	163
Fnu4HI	GCNGC	2 cut(s)	221, 422
FokI	GGATG	1 cut(s)	1012
FriOI	GRGCYC	1 cut(s)	810
Fsp4HI	GCNGC	2 cut(s)	221, 422
FspBI	CTAG	1 cut(s)	425
GlaI	GCGC	2 cut(s)	85, 1014
GluI	GCNGC	2 cut(s)	221, 422
HaeIII	GGCC	1 cut(s)	239
HapII	CCGG	1 cut(s)	752
HgaI	GACGC	1 cut(s)	698
HhaI	GCGC	2 cut(s)	86, 1015
Hin1II	CATG	8 cut(s)	142, 238, 268, 336, 533, 641, 734, 1036
Hin6I	GCGC	2 cut(s)	84, 1013
HinP1I	GCGC	2 cut(s)	84, 1013
HinfI	GANTC	4 cut(s)	479, 641, 735, 983
HpaII	CCGG	1 cut(s)	752
HphI	GGTGA	2 cut(s)	296, 610
Hpy166II	GTNNAC	5 cut(s)	391, 470, 500, 950, 1000
Hpy188I	TCNGA	8 cut(s)	45, 108, 168, 454, 682, 775, 801, 1059
Hpy188III	TCNNGA	2 cut(s)	539, 752
Hpy8I	GTNNAC	5 cut(s)	391, 470, 500, 950, 1000
HpyAV	CCTTC	6 cut(s)	10, 306, 439, 534, 643, 1079
HpyCH4III	ACNGT	2 cut(s)	829, 878
HpyCH4IV	ACGT	1 cut(s)	714
HpyF10VI	GCNNNNNNNGC	3 cut(s)	245, 617, 1019
HpyF3I	CTNAG	2 cut(s)	477, 1043
HpySE526I	ACGT	1 cut(s)	714
Hsp92II	CATG	8 cut(s)	142, 238, 268, 336, 533, 641, 734, 1036
HspAI	GCGC	2 cut(s)	84, 1013
Kpn2I	TCCGGA	1 cut(s)	751
Ksp22I	TGATCA	1 cut(s)	163
Kzo9I	GATC	4 cut(s)	163, 252, 600, 754
LguI	GCTCTTC	1 cut(s)	831
LmnI	GCTCC	3 cut(s)	541, 569, 1088
Lsp1109I	GCAGC	2 cut(s)	232, 408
LweI	GCATC	4 cut(s)	15, 686, 963, 1100
MaeI	CTAG	1 cut(s)	425
MaeII	ACGT	1 cut(s)	714
MaeIII	GTNAC	3 cut(s)	62, 710, 878
MalI	GATC	4 cut(s)	165, 254, 602, 756
MboI	GATC	4 cut(s)	163, 252, 600, 754
MboII	GAAGA	5 cut(s)	496, 503, 620, 848, 1090
MflI	RGATCY	1 cut(s)	252
MhlI	GDGCHC	3 cut(s)	472, 810, 1002
MluCI	AATT	4 cut(s)	337, 511, 817, 1099
MlyI	GAGTC	1 cut(s)	488
MmeI	TCCRAC	1 cut(s)	370
MnlI	CCTC	7 cut(s)	250, 269, 316, 377, 480, 749, 1038
MroI	TCCGGA	1 cut(s)	751
MroXI	GAANNNNTTC	1 cut(s)	341
MseI	TTAA	2 cut(s)	120, 201
MspA1I	CMGCKG	1 cut(s)	552
MspI	CCGG	1 cut(s)	752
MspR9I	CCNGG	2 cut(s)	697, 843
Mva1269I	GAATGC	1 cut(s)	859
MvaI	CCWGG	2 cut(s)	697, 843
MvnI	CGCG	2 cut(s)	399, 709
MwoI	GCNNNNNNNGC	3 cut(s)	245, 617, 1019
NdeI	CATATG	1 cut(s)	657
NdeII	GATC	4 cut(s)	163, 252, 600, 754
NlaIII	CATG	8 cut(s)	142, 238, 268, 336, 533, 641, 734, 1036
NmuCI	GTSAC	2 cut(s)	710, 878
PciSI	GCTCTTC	1 cut(s)	831
PctI	GAATGC	1 cut(s)	859
PdmI	GAANNNNTTC	1 cut(s)	341
PfeI	GAWTC	3 cut(s)	641, 735, 983
PkrI	GCNGC	2 cut(s)	222, 423
PleI	GAGTC	1 cut(s)	487
PmaCI	CACGTG	1 cut(s)	715
PmlI	CACGTG	1 cut(s)	715
PpsI	GAGTC	1 cut(s)	487
Ppu21I	YACGTR	1 cut(s)	715
Psp6I	CCWGG	2 cut(s)	695, 841
PspCI	CACGTG	1 cut(s)	715
PspGI	CCWGG	2 cut(s)	695, 841
PsuI	RGATCY	1 cut(s)	252
SapI	GCTCTTC	1 cut(s)	831
SaqAI	TTAA	2 cut(s)	120, 201
SatI	GCNGC	2 cut(s)	221, 422
Sau3AI	GATC	4 cut(s)	163, 252, 600, 754
SchI	GAGTC	1 cut(s)	488
ScrFI	CCNGG	2 cut(s)	697, 843
SduI	GDGCHC	3 cut(s)	472, 810, 1002
SfaNI	GCATC	4 cut(s)	15, 686, 963, 1100
SfcI	CTRYAG	2 cut(s)	79, 553
SmlI	CTYRAG	1 cut(s)	317
SmoI	CTYRAG	1 cut(s)	317
Sse9I	AATT	4 cut(s)	337, 511, 817, 1099
SsiI	CCGC	2 cut(s)	397, 550
SspMI	CTAG	1 cut(s)	425
StyD4I	CCNGG	2 cut(s)	695, 841
TaaI	ACNGT	2 cut(s)	829, 878
TaiI	ACGT	1 cut(s)	717
TaqI	TCGA	4 cut(s)	14, 482, 927, 1037
TasI	AATT	4 cut(s)	337, 511, 817, 1099
TfiI	GAWTC	3 cut(s)	641, 735, 983
Tru1I	TTAA	2 cut(s)	120, 201
Tru9I	TTAA	2 cut(s)	120, 201
TscAI	CASTG	3 cut(s)	364, 1002, 1101
TseFI	GTSAC	2 cut(s)	710, 878
TseI	GCWGC	2 cut(s)	220, 421
Tsp45I	GTSAC	2 cut(s)	710, 878
TspDTI	ATGAA	3 cut(s)	243, 444, 922
TspGWI	ACGGA	1 cut(s)	324
TspRI	CASTG	3 cut(s)	364, 1002, 1101
VneI	GTGCAC	2 cut(s)	468, 998
XcmI	CCANNNNNNNNNTGG	1 cut(s)	829
XmnI	GAANNNNTTC	1 cut(s)	341
XspI	CTAG	1 cut(s)	425

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.