RLG00000026507

Signal peptide peptidase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0014178
Physical Location & Seq
Reverse (-)
3450724 .. 3453555
2832 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000026507

Sequence Viewer

Length: 1269 bp
ATGAAATTATTGAAAGAGCCAAAGTGCAGGGGCAAAATTGCAAATCACCAAAGAGCTTTTCTCCATTGCATAGAGCTCATACAAAACACTGAACCAGACAGGCTTGAATCACACAGAAAGCCAAGGTTTTTCAAACTCCCCAAAGTCCAAGGTTGTATGGTTCTCTGCTCATGGTTTAGAGGGAGAGACATTGCAGCTTTGGATGCACATGTTGTGATTGTAGGTGTTACATTTGGGTCTGCATTTCGTGCTCTAAATTATGGAAAAGAAATGGAGCGGAATCGTGATTTTTCAGAAGCATCGATTACGTTAGATAGGTCCCAAGCACTTATGATCCCTGTAATGAGCTCCCTAAGCTTGCTTTTGATGTTCTACCTCTTCACTTCTGTTTCACAACTCCTGACTGTATTCACAGCCATTGCATCCGTCTCCTCCCTGTTTTTCTGCCTATCTCCTTCAGTAGCCTATTTGAAGTCACAGCTTGGTTTGCCCGACCCCTATGTGTCTAGGTGTTGTTCAAAGTCATTTACACGCACCCAAGGATCACTACTGGTTTTATGCATTGGTACAGTTGCTACTTGGCTTGTTACTGGACATTGGATACTGAACAACTTGTTGGGCATTTCTATATGTATTGCCTTTGTGAGTCATGTCCGTCTTCCAAACATCAAAGTTTGTGCAATGCTCCTTGTCTGTCTATTCGTATACGACATATTCTGGGTCTTCTTCTCTGAGAGATTTTTTGGGGCGAATGTCATGGTATCGGTAGCAACACAACAAGCCTCAAACCCTGTTCACACGGTGGCAAATAGTTTGAGTCTTCCTGGGCTGCAAATGGTGACAAAGAAGTTGGAGTTGCCTGTGAAGATTGTTTTCCCCAGGAACTTATTTGGTGGAGTGACTCCTGGAGGAAGTACCAGAGACTTCATGATGCTTGGTCTGGGTGACATGGCAATACCTGCTATGCTTCTGGCATTAGTCCTATGTTTTGATTATCGAAAGAGCAGGGACACAGTAAATTTGCTAGAGATGCATTCCTCAAAGGGGCACAAATATATTTGGTATGCCCTTCCTGGATATGCCTTTGGACTGGTCACAGCTTTAGCAGCTGGAGTTTTGACGCAGTCACCCCAACCTGCTCTTCTCTATTTGGTGCCCTCAACTCTGGGACCAATTGTCGTCATTTCTTGGATTAGGAAGGAACTAGCAGAATTATGGGATGGCCCTTTGCCAAGCTTCAACGATAAAGTTCACCAGATAGAAGTATGA

Protein Analysis

423

Amino Acids

46.92

Weight (kDa)

9.24

Isoelectric Point (pI)

32.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_A22B PF04258 100 - 408 2e-73 Signal peptide peptidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014178)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G33410
fragaria_vesca FvH4_7g29650
malus_domestica MD01G1203500.v1.1 MD07G1272800.v1.1
prunus_persica Prupe.2G296100_v2.0.a1 Prupe.2G296100_v2.0.a1
pyrus_communis pycom01g21260 pycom07g24920
rosa_chinensis RchiOBHm_Chr1g0377661
rosa_laevigata RLG00000026507
rosa_rugosa Rorug01G0404000 Rorug01G0404100
rosa_samantha Rh1AG428400 Rh1BG380900 Rh1CG394900 Rh1DG411900
rosa_wichuraiana Rw1G037030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 967, 1144
AccB1I GGYRCC 1 cut(s) 1153
AccBSI CCGCTC 1 cut(s) 277
AccI GTMKAC 1 cut(s) 705
AciI CCGC 1 cut(s) 277
AclWI GGATC 2 cut(s) 328, 550
AcsI RAATTY 1 cut(s) 1018
AcuI CTGAAG 1 cut(s) 441
AdeI CACNNNGTG 1 cut(s) 802
AfaI GTAC 2 cut(s) 568, 916
AfiI CCNNNNNNNGG 1 cut(s) 1044
AflIII ACRYGT 1 cut(s) 208
AgsI TTSAA 6 cut(s) 13, 107, 133, 472, 519, 1240
AhdI GACNNNNNGTC 1 cut(s) 1175
AjnI CCWGG 4 cut(s) 823, 878, 904, 1072
AjuI GAANNNNNNNTTGG 6 cut(s) 42, 74, 599, 631, 1125, 1157
AluBI AGCT 9 cut(s) 56, 76, 197, 348, 357, 481, 1100, 1109, 1236
AluI AGCT 9 cut(s) 56, 76, 197, 348, 357, 481, 1100, 1109, 1236
Alw21I GWGCWC 3 cut(s) 78, 253, 350
Alw26I GTCTC 3 cut(s) 180, 433, 915
AlwI GGATC 2 cut(s) 328, 550
AoxI GGCC 1 cut(s) 1222
ApeKI GCWGC 3 cut(s) 194, 829, 1106
ApoI RAATTY 1 cut(s) 1018
AspS9I GGNCC 3 cut(s) 318, 1169, 1223
AsuHPI GGTGA 5 cut(s) 38, 850, 956, 1119, 1244
AvaII GGWCC 2 cut(s) 318, 1169
BaeGI GKGCMC 2 cut(s) 1050, 1158
BanI GGYRCC 1 cut(s) 1153
BanII GRGCYC 2 cut(s) 78, 350
BbsI GAAGAC 3 cut(s) 650, 715, 812
Bbv12I GWGCWC 3 cut(s) 78, 253, 350
BbvI GCAGC 3 cut(s) 206, 816, 1118
BccI CCATC 1 cut(s) 1214
BciT130I CCWGG 4 cut(s) 825, 880, 906, 1074
BciVI GTATCC 1 cut(s) 594
BcoDI GTCTC 3 cut(s) 180, 433, 915
BfaI CTAG 3 cut(s) 507, 1025, 1205
BfuAI ACCTGC 2 cut(s) 967, 1144
BfuI GTATCC 1 cut(s) 594
BisI GCNGC 3 cut(s) 195, 830, 1107
BlsI GCNGC 3 cut(s) 196, 831, 1108
Bme1390I CCNGG 4 cut(s) 825, 880, 906, 1074
Bme18I GGWCC 2 cut(s) 318, 1169
BmeRI GACNNNNNGTC 1 cut(s) 1175
BmgT120I GGNCC 3 cut(s) 318, 1169, 1223
BmiI GGNNCC 3 cut(s) 320, 1155, 1170
BmrFI CCNGG 4 cut(s) 825, 880, 906, 1074
BmsI GCATC 5 cut(s) 193, 308, 431, 921, 1020
BpiI GAAGAC 3 cut(s) 650, 715, 812
BplI GAGNNNNNCTC 2 cut(s) 45, 77
BpmI CTGGAG 2 cut(s) 927, 1131
Bpu10I CCTNAGC 1 cut(s) 353
Bsa29I ATCGAT 1 cut(s) 302
BsaJI CCNNGG 5 cut(s) 122, 148, 538, 824, 878
Bsc4I CCNNNNNNNGG 1 cut(s) 1044
Bse1I ACTGG 3 cut(s) 555, 595, 1095
Bse3DI GCAATG 4 cut(s) 64, 189, 417, 687
BseBI CCWGG 4 cut(s) 825, 880, 906, 1074
BseCI ATCGAT 1 cut(s) 302
BseDI CCNNGG 5 cut(s) 122, 148, 538, 824, 878
BseGI GGATG 3 cut(s) 208, 422, 1225
BseLI CCNNNNNNNGG 1 cut(s) 1044
BseMI GCAATG 4 cut(s) 64, 189, 417, 687
BseMII CTCAG 1 cut(s) 723
BseNI ACTGG 3 cut(s) 555, 595, 1095
BseRI GAGGAG 1 cut(s) 421
BseSI GKGCMC 2 cut(s) 1050, 1158
BseXI GCAGC 3 cut(s) 206, 816, 1118
BsgI GTGCAG 1 cut(s) 46
BshFI GGCC 1 cut(s) 1224
BshNI GGYRCC 1 cut(s) 1153
BshVI ATCGAT 1 cut(s) 302
BsiHKAI GWGCWC 3 cut(s) 78, 253, 350
BslFI GGGAC 3 cut(s) 304, 1022, 1182
BslI CCNNNNNNNGG 1 cut(s) 1044
BsmAI GTCTC 3 cut(s) 180, 433, 915
BsmBI CGTCTC 1 cut(s) 433
BsmFI GGGAC 3 cut(s) 304, 1022, 1182
BsmI GAATGC 1 cut(s) 1033
BsnI GGCC 1 cut(s) 1224
Bsp1286I GDGCHC 5 cut(s) 78, 253, 350, 1050, 1158
Bsp143I GATC 2 cut(s) 333, 542
BspACI CCGC 1 cut(s) 277
BspANI GGCC 1 cut(s) 1224
BspCNI CTCAG 1 cut(s) 724
BspDI ATCGAT 1 cut(s) 302
BspHI TCATGA 1 cut(s) 927
BspLI GGNNCC 3 cut(s) 320, 1155, 1170
BspMI ACCTGC 2 cut(s) 967, 1144
BspPI GGATC 2 cut(s) 328, 550
BspQI GCTCTTC 1 cut(s) 1146
BspT107I GGYRCC 1 cut(s) 1153
BsrBI CCGCTC 1 cut(s) 277
BsrDI GCAATG 4 cut(s) 64, 189, 417, 687
BsrI ACTGG 3 cut(s) 555, 595, 1095
BssECI CCNNGG 5 cut(s) 122, 148, 538, 824, 878
BssMI GATC 2 cut(s) 333, 542
BssNAI GTATAC 1 cut(s) 706
BssT1I CCWWGG 3 cut(s) 122, 148, 538
Bst1107I GTATAC 1 cut(s) 706
Bst2UI CCWGG 4 cut(s) 825, 880, 906, 1074
Bst4CI ACNGT 4 cut(s) 406, 571, 802, 1015
Bst6I CTCTTC 2 cut(s) 383, 1146
BstAPI GCANNNNNTGC 2 cut(s) 248, 959
BstC8I GCNNGC 1 cut(s) 359
BstDEI CTNAG 2 cut(s) 353, 732
BstF5I GGATG 3 cut(s) 208, 422, 1225
BstKTI GATC 2 cut(s) 336, 545
BstMAI GTCTC 3 cut(s) 180, 433, 915
BstMBI GATC 2 cut(s) 333, 542
BstMWI GCNNNNNNNGC 7 cut(s) 203, 248, 354, 487, 959, 1030, 1106
BstNI CCWGG 4 cut(s) 825, 880, 906, 1074
BstNSI RCATGY 1 cut(s) 212
BstSCI CCNGG 4 cut(s) 823, 878, 904, 1072
BstSLI GKGCMC 2 cut(s) 1050, 1158
BstV1I GCAGC 3 cut(s) 206, 816, 1118
BstV2I GAAGAC 3 cut(s) 650, 715, 812
BstZ17I GTATAC 1 cut(s) 706
Bsu15I ATCGAT 1 cut(s) 302
BsuI GTATCC 1 cut(s) 594
BsuRI GGCC 1 cut(s) 1224
BsuTUI ATCGAT 1 cut(s) 302
BtsCI GGATG 3 cut(s) 208, 422, 1225
BtsIMutI CAGTG 1 cut(s) 87
BveI ACCTGC 2 cut(s) 967, 1144
Cac8I GCNNGC 1 cut(s) 359
CciI TCATGA 1 cut(s) 927
Cfr13I GGNCC 3 cut(s) 318, 1169, 1223
ClaI ATCGAT 1 cut(s) 302
CseI GACGC 1 cut(s) 1129
Csp6I GTAC 2 cut(s) 567, 915
CviAII CATG 6 cut(s) 171, 209, 650, 757, 928, 949
CviQI GTAC 2 cut(s) 567, 915
DdeI CTNAG 2 cut(s) 353, 732
DpnI GATC 2 cut(s) 335, 544
DpnII GATC 2 cut(s) 333, 542
DraIII CACNNNGTG 1 cut(s) 802
DriI GACNNNNNGTC 1 cut(s) 1175
Eam1104I CTCTTC 2 cut(s) 383, 1146
Eam1105I GACNNNNNGTC 1 cut(s) 1175
EarI CTCTTC 2 cut(s) 383, 1146
Ecl136II GAGCTC 2 cut(s) 76, 348
Eco130I CCWWGG 3 cut(s) 122, 148, 538
Eco24I GRGCYC 2 cut(s) 78, 350
Eco47I GGWCC 2 cut(s) 318, 1169
Eco53kI GAGCTC 2 cut(s) 76, 348
Eco57I CTGAAG 1 cut(s) 441
EcoICRI GAGCTC 2 cut(s) 76, 348
EcoO109I RGGNCCY 1 cut(s) 318
EcoRII CCWGG 4 cut(s) 823, 878, 904, 1072
EcoT14I CCWWGG 3 cut(s) 122, 148, 538
EcoT22I ATGCAT 2 cut(s) 563, 1035
EcoT38I GRGCYC 2 cut(s) 78, 350
ErhI CCWWGG 3 cut(s) 122, 148, 538
Esp3I CGTCTC 1 cut(s) 433
FaeI CATG 6 cut(s) 174, 212, 653, 760, 931, 952
FaqI GGGAC 3 cut(s) 304, 1022, 1182
FatI CATG 6 cut(s) 170, 208, 649, 756, 927, 948
FblI GTMKAC 1 cut(s) 705
Fnu4HI GCNGC 3 cut(s) 195, 830, 1107
FokI GGATG 3 cut(s) 215, 409, 1232
FriOI GRGCYC 2 cut(s) 78, 350
Fsp4HI GCNGC 3 cut(s) 195, 830, 1107
FspBI CTAG 3 cut(s) 507, 1025, 1205
GluI GCNGC 3 cut(s) 195, 830, 1107
GsuI CTGGAG 2 cut(s) 927, 1131
HaeIII GGCC 1 cut(s) 1224
HgaI GACGC 1 cut(s) 1129
Hin1II CATG 6 cut(s) 174, 212, 653, 760, 931, 952
HindIII AAGCTT 2 cut(s) 355, 1234
HinfI GANTC 5 cut(s) 107, 280, 646, 817, 901
HphI GGTGA 5 cut(s) 38, 850, 956, 1119, 1244
Hpy166II GTNNAC 3 cut(s) 706, 796, 1252
Hpy188I TCNGA 2 cut(s) 295, 733
Hpy188III TCNNGA 3 cut(s) 284, 400, 928
Hpy8I GTNNAC 3 cut(s) 706, 796, 1252
HpyAV CCTTC 3 cut(s) 465, 1079, 1192
HpyCH4III ACNGT 4 cut(s) 406, 571, 802, 1015
HpyCH4IV ACGT 1 cut(s) 308
HpyF10VI GCNNNNNNNGC 7 cut(s) 203, 248, 354, 487, 959, 1030, 1106
HpyF3I CTNAG 2 cut(s) 353, 732
HpySE526I ACGT 1 cut(s) 308
Hsp92II CATG 6 cut(s) 174, 212, 653, 760, 931, 952
Kzo9I GATC 2 cut(s) 333, 542
LguI GCTCTTC 1 cut(s) 1146
LmnI GCTCC 3 cut(s) 274, 353, 690
Lsp1109I GCAGC 3 cut(s) 206, 816, 1118
LweI GCATC 5 cut(s) 193, 308, 431, 921, 1020
MaeI CTAG 3 cut(s) 507, 1025, 1205
MaeII ACGT 1 cut(s) 308
MaeIII GTNAC 8 cut(s) 226, 474, 586, 838, 898, 944, 1093, 1125
MalI GATC 2 cut(s) 335, 544
MbiI CCGCTC 1 cut(s) 277
MboI GATC 2 cut(s) 333, 542
MboII GAAGA 7 cut(s) 370, 650, 715, 718, 812, 877, 1133
MfeI CAATTG 1 cut(s) 1173
MhlI GDGCHC 5 cut(s) 78, 253, 350, 1050, 1158
MluCI AATT 6 cut(s) 5, 36, 256, 1018, 1173, 1211
MlyI GAGTC 3 cut(s) 655, 826, 895
MmeI TCCRAC 1 cut(s) 831
MnlI CCTC 7 cut(s) 173, 386, 442, 793, 902, 1048, 1168
Mph1103I ATGCAT 2 cut(s) 563, 1035
MspA1I CMGCKG 1 cut(s) 1109
MspR9I CCNGG 4 cut(s) 825, 880, 906, 1074
MunI CAATTG 1 cut(s) 1173
Mva1269I GAATGC 1 cut(s) 1033
MvaI CCWGG 4 cut(s) 825, 880, 906, 1074
MwoI GCNNNNNNNGC 7 cut(s) 203, 248, 354, 487, 959, 1030, 1106
NdeII GATC 2 cut(s) 333, 542
NlaIII CATG 6 cut(s) 174, 212, 653, 760, 931, 952
NlaIV GGNNCC 3 cut(s) 320, 1155, 1170
NmuCI GTSAC 6 cut(s) 474, 838, 898, 944, 1093, 1125
NsiI ATGCAT 2 cut(s) 563, 1035
NspI RCATGY 1 cut(s) 212
PagI TCATGA 1 cut(s) 927
PciI ACATGT 1 cut(s) 208
PciSI GCTCTTC 1 cut(s) 1146
PctI GAATGC 1 cut(s) 1033
PfeI GAWTC 2 cut(s) 107, 280
PflFI GACNNNGTC 1 cut(s) 1123
PfoI TCCNGGA 2 cut(s) 904, 1072
PkrI GCNGC 3 cut(s) 196, 831, 1108
PleI GAGTC 3 cut(s) 654, 825, 895
PpsI GAGTC 3 cut(s) 654, 825, 895
PpuMI RGGWCCY 1 cut(s) 318
PscI ACATGT 1 cut(s) 208
Psp124BI GAGCTC 2 cut(s) 78, 350
Psp5II RGGWCCY 1 cut(s) 318
Psp6I CCWGG 4 cut(s) 823, 878, 904, 1072
PspGI CCWGG 4 cut(s) 823, 878, 904, 1072
PspN4I GGNNCC 3 cut(s) 320, 1155, 1170
PspPI GGNCC 3 cut(s) 318, 1169, 1223
PspPPI RGGWCCY 1 cut(s) 318
PsyI GACNNNGTC 1 cut(s) 1123
PvuII CAGCTG 1 cut(s) 1109
RsaI GTAC 2 cut(s) 568, 916
RsaNI GTAC 2 cut(s) 567, 915
SacI GAGCTC 2 cut(s) 78, 350
SapI GCTCTTC 1 cut(s) 1146
SatI GCNGC 3 cut(s) 195, 830, 1107
Sau3AI GATC 2 cut(s) 333, 542
Sau96I GGNCC 3 cut(s) 318, 1169, 1223
SchI GAGTC 3 cut(s) 655, 826, 895
ScrFI CCNGG 4 cut(s) 825, 880, 906, 1074
SduI GDGCHC 5 cut(s) 78, 253, 350, 1050, 1158
SfaNI GCATC 5 cut(s) 193, 308, 431, 921, 1020
SinI GGWCC 2 cut(s) 318, 1169
Sse9I AATT 6 cut(s) 5, 36, 256, 1018, 1173, 1211
SsiI CCGC 1 cut(s) 277
SspMI CTAG 3 cut(s) 507, 1025, 1205
SstI GAGCTC 2 cut(s) 78, 350
StyD4I CCNGG 4 cut(s) 823, 878, 904, 1072
StyI CCWWGG 3 cut(s) 122, 148, 538
TaaI ACNGT 4 cut(s) 406, 571, 802, 1015
TaiI ACGT 1 cut(s) 311
TaqI TCGA 2 cut(s) 302, 997
TasI AATT 6 cut(s) 5, 36, 256, 1018, 1173, 1211
TfiI GAWTC 2 cut(s) 107, 280
TscAI CASTG 1 cut(s) 94
TseFI GTSAC 6 cut(s) 474, 838, 898, 944, 1093, 1125
TseI GCWGC 3 cut(s) 194, 829, 1106
Tsp45I GTSAC 6 cut(s) 474, 838, 898, 944, 1093, 1125
TspDTI ATGAA 2 cut(s) 17, 916
TspGWI ACGGA 2 cut(s) 415, 644
TspRI CASTG 1 cut(s) 94
Tth111I GACNNNGTC 1 cut(s) 1123
VpaK11BI GGWCC 2 cut(s) 318, 1169
XapI RAATTY 1 cut(s) 1018
XceI RCATGY 1 cut(s) 212
XmiI GTMKAC 1 cut(s) 705
XspI CTAG 3 cut(s) 507, 1025, 1205
Zsp2I ATGCAT 2 cut(s) 563, 1035
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.