Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0014178

Physical Location & Seq

Genomic Coordinates Forward (+)

25438509 .. 25440343

Gene Structure 1835 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g24920.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

ATGGAGCCTCTCTGGAAGCTTTTTTATTTGCTGGAGCCTGCACCTATTACTCTAGTTGTAACGGCAGTAGGCGTGACTTTTGGATCTGCATTTCCTGCTCTAAATTATGGGAAAGAAATGGAGAAAAATCGTGACTTATCTGAAACATCAATTACATTAGATAGGTCCCAAGCACTCATGATACCGGTGATGAGCTCTATAAGCTTGCTTTTGATGTTCTACTTGTTCACTTCCGTCTCACAACTCCTCACTGTATTCACAGCCGTTGCCTCCGTCTCCTCCCTATTTTTCTGCATGTCTCCTTATGTAGCCTATTTGAAGTCACAATTTGGTCTTGCTGATCCATATGTGTCAAGATGTTGTTCCAAATCATTTACGCGAATCCAAGCGCTGTTATTGCTGTTATGCATTGGTACAGTTGCTGCTTGGCTTGTTTCTGGACATTGGGTATTGAACAATTTGTTGGGCATTTCCATATGTGTTGCCTTTGTGAGTCATGTCCGTCTTCCAAACATTAAAATTTGTGCGATGCTTCTTGTCTGCCTATTCGTATATGACATATTCTGGGTTTTCTTCTCTGAGAGATTTTTTGGGGCGAATGTCATGGTATCAGTGGCAACACAACAAGCCTCGAACCCAGTTCATACTGTTGCAAATAGTTTGAGTCTTCCTGGACTGCAAATGGTAACGAAGAAGTTGGAATTGCCTGTGAAGATTGTCTTTCCCAGGAACTTAATTGGTGGAGAGATTCCTGGAGGTGCCAGAGACTTCATGATGCTTGGTCTCGGTGACATGGCAATACCTGCCATGCTACTGGCATTAGTCCTAAGTTTTGATCACCGAAGGAGCAAGGATTTGGTAAATCTGTTAGATAAGCATTCCTCAAAGGGGCACAAATATATTTGGTATGCCCTTCCTGGATATGCCATTGGCCTGGTTACGGCTTTAGCAGCTGGCATCTTGACACACTCACCTCAACCAGCGCTTCTTTATCTGGTGCCTTCGACGCTGGGACCAATTGTTTTCATTTCTTGGATAAGGAAGGAACTAGCGGAGCTATGGGACGGACCCTTGCCAAGCATGAACGACAAGGCTCACCAGATTGAAGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005765 GO:0005768 GO:0005773 GO:0005774 GO:0005783 GO:0005789 GO:0005794 GO:0005798 GO:0005802 GO:0012505 GO:0016020 GO:0016021 GO:0030176 GO:0030660 GO:0031090 GO:0031224 GO:0031227 GO:0031410 GO:0031982 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044433 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0071458 GO:0071556 GO:0097708 GO:0098552 GO:0098553 GO:0098554 GO:0098562 GO:0098588 GO:0098791 GO:0098805 GO:0098827 GO:0098852

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_A22B

Protein Analysis

371

Amino Acids

40.77

Weight (kDa)

8.61

Isoelectric Point (pI)

40.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014178)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33410
fragaria_vesca	FvH4_7g29650
malus_domestica	MD01G1203500.v1.1 MD07G1272800.v1.1
prunus_persica	Prupe.2G296100_v2.0.a1 Prupe.2G296100_v2.0.a1
pyrus_communis	pycom01g21260 pycom07g24920
rosa_chinensis	RchiOBHm_Chr1g0377661
rosa_laevigata	RLG00000026507
rosa_rugosa	Rorug01G0404000 Rorug01G0404100
rosa_samantha	Rh1AG428400 Rh1BG380900 Rh1CG394900 Rh1DG411900
rosa_wichuraiana	Rw1G037030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	811
AccB1I	GGYRCC	2 cut(s)	758, 997
AccII	CGCG	1 cut(s)	379
AciI	CCGC	1 cut(s)	1052
AclWI	GGATC	2 cut(s)	91, 335
AcsI	RAATTY	1 cut(s)	519
AfaI	GTAC	1 cut(s)	415
AfeI	AGCGCT	2 cut(s)	390, 984
AfiI	CCNNNNNNNGG	2 cut(s)	888, 940
AgeI	ACCGGT	1 cut(s)	184
AgsI	TTSAA	3 cut(s)	319, 454, 1106
AjnI	CCWGG	5 cut(s)	670, 725, 751, 916, 933
AjuI	GAANNNNNNNTTGG	2 cut(s)	446, 478
AluBI	AGCT	5 cut(s)	19, 195, 204, 953, 1057
AluI	AGCT	5 cut(s)	19, 195, 204, 953, 1057
Alw21I	GWGCWC	1 cut(s)	197
Alw26I	GTCTC	5 cut(s)	241, 280, 303, 759, 788
AlwI	GGATC	2 cut(s)	91, 335
AlwNI	CAGNNNCTG	1 cut(s)	422
Aor51HI	AGCGCT	2 cut(s)	390, 984
AoxI	GGCC	1 cut(s)	931
ApeKI	GCWGC	2 cut(s)	422, 950
ApoI	RAATTY	1 cut(s)	519
AsiGI	ACCGGT	1 cut(s)	184
AspLEI	GCGC	2 cut(s)	391, 985
AspS9I	GGNCC	3 cut(s)	165, 1013, 1067
AsuHPI	GGTGA	5 cut(s)	199, 800, 830, 963, 1088
AvaII	GGWCC	3 cut(s)	165, 1013, 1067
BaeGI	GKGCMC	1 cut(s)	894
BanI	GGYRCC	2 cut(s)	758, 997
BanII	GRGCYC	1 cut(s)	197
BbsI	GAAGAC	2 cut(s)	497, 659
Bbv12I	GWGCWC	1 cut(s)	197
BbvI	GCAGC	2 cut(s)	409, 962
BceAI	ACGGC	3 cut(s)	78, 248, 957
BciT130I	CCWGG	5 cut(s)	672, 727, 753, 918, 935
BclI	TGATCA	1 cut(s)	835
BcoDI	GTCTC	5 cut(s)	241, 280, 303, 759, 788
BfaI	CTAG	2 cut(s)	53, 1049
BfoI	RGCGCY	2 cut(s)	392, 986
BfuAI	ACCTGC	1 cut(s)	811
BisI	GCNGC	2 cut(s)	423, 951
BlsI	GCNGC	2 cut(s)	424, 952
Bme1390I	CCNGG	5 cut(s)	672, 727, 753, 918, 935
Bme18I	GGWCC	3 cut(s)	165, 1013, 1067
BmgT120I	GGNCC	3 cut(s)	165, 1013, 1067
BmiI	GGNNCC	7 cut(s)	6, 36, 167, 760, 999, 1014, 1069
BmrFI	CCNGG	5 cut(s)	672, 727, 753, 918, 935
BmrI	ACTGGG	1 cut(s)	632
BmsI	GCATC	3 cut(s)	519, 765, 966
BmuI	ACTGGG	1 cut(s)	632
BpiI	GAAGAC	2 cut(s)	497, 659
BpmI	CTGGAG	2 cut(s)	53, 774
BsaI	GGTCTC	1 cut(s)	788
BsaJI	CCNNGG	1 cut(s)	725
BsaWI	WCCGGW	1 cut(s)	184
Bsc4I	CCNNNNNNNGG	2 cut(s)	888, 940
Bse118I	RCCGGY	1 cut(s)	184
Bse1I	ACTGG	2 cut(s)	638, 819
BseBI	CCWGG	5 cut(s)	672, 727, 753, 918, 935
BseDI	CCNNGG	1 cut(s)	725
BseLI	CCNNNNNNNGG	2 cut(s)	888, 940
BseMII	CTCAG	1 cut(s)	570
BseNI	ACTGG	2 cut(s)	638, 819
BseRI	GAGGAG	2 cut(s)	236, 268
BseSI	GKGCMC	1 cut(s)	894
BseXI	GCAGC	2 cut(s)	409, 962
BseYI	CCCAGC	1 cut(s)	1009
BsgI	GTGCAG	1 cut(s)	24
Bsh1236I	CGCG	1 cut(s)	379
BshFI	GGCC	1 cut(s)	933
BshNI	GGYRCC	2 cut(s)	758, 997
BshTI	ACCGGT	1 cut(s)	184
BsiHKAI	GWGCWC	1 cut(s)	197
BsiSI	CCGG	1 cut(s)	185
BslFI	GGGAC	3 cut(s)	151, 1026, 1076
BslI	CCNNNNNNNGG	2 cut(s)	888, 940
BsmAI	GTCTC	5 cut(s)	241, 280, 303, 759, 788
BsmBI	CGTCTC	2 cut(s)	241, 280
BsmFI	GGGAC	3 cut(s)	151, 1026, 1076
BsmI	GAATGC	1 cut(s)	877
BsnI	GGCC	1 cut(s)	933
Bso31I	GGTCTC	1 cut(s)	788
Bsp1286I	GDGCHC	2 cut(s)	197, 894
Bsp143I	GATC	3 cut(s)	83, 340, 835
BspACI	CCGC	1 cut(s)	1052
BspANI	GGCC	1 cut(s)	933
BspCNI	CTCAG	1 cut(s)	571
BspFNI	CGCG	1 cut(s)	379
BspHI	TCATGA	2 cut(s)	177, 771
BspLI	GGNNCC	7 cut(s)	6, 36, 167, 760, 999, 1014, 1069
BspMI	ACCTGC	1 cut(s)	811
BspPI	GGATC	2 cut(s)	91, 335
BspT107I	GGYRCC	2 cut(s)	758, 997
BspTNI	GGTCTC	1 cut(s)	788
BsrFI	RCCGGY	1 cut(s)	184
BsrI	ACTGG	2 cut(s)	638, 819
BssAI	RCCGGY	1 cut(s)	184
BssECI	CCNNGG	1 cut(s)	725
BssMI	GATC	3 cut(s)	83, 340, 835
Bst2UI	CCWGG	5 cut(s)	672, 727, 753, 918, 935
Bst4CI	ACNGT	3 cut(s)	253, 418, 649
BstAPI	GCANNNNNTGC	2 cut(s)	95, 803
BstC8I	GCNNGC	3 cut(s)	39, 206, 955
BstDEI	CTNAG	2 cut(s)	579, 827
BstFNI	CGCG	1 cut(s)	379
BstH2I	RGCGCY	2 cut(s)	392, 986
BstHHI	GCGC	2 cut(s)	391, 985
BstKTI	GATC	3 cut(s)	86, 343, 838
BstMAI	GTCTC	5 cut(s)	241, 280, 303, 759, 788
BstMBI	GATC	3 cut(s)	83, 340, 835
BstMWI	GCNNNNNNNGC	6 cut(s)	95, 201, 397, 803, 950, 1006
BstNI	CCWGG	5 cut(s)	672, 727, 753, 918, 935
BstNSI	RCATGY	1 cut(s)	298
BstSCI	CCNGG	5 cut(s)	670, 725, 751, 916, 933
BstSLI	GKGCMC	1 cut(s)	894
BstUI	CGCG	1 cut(s)	379
BstV1I	GCAGC	2 cut(s)	409, 962
BstV2I	GAAGAC	2 cut(s)	497, 659
BstX2I	RGATCY	1 cut(s)	83
BstXI	CCANNNNNNTGG	2 cut(s)	814, 934
BstYI	RGATCY	1 cut(s)	83
BsuRI	GGCC	1 cut(s)	933
BtgZI	GCGATG	1 cut(s)	542
BtsIMutI	CAGTG	2 cut(s)	249, 618
BveI	ACCTGC	1 cut(s)	811
Cac8I	GCNNGC	3 cut(s)	39, 206, 955
CaiI	CAGNNNCTG	1 cut(s)	422
CciI	TCATGA	2 cut(s)	177, 771
CfoI	GCGC	2 cut(s)	391, 985
Cfr10I	RCCGGY	1 cut(s)	184
Cfr13I	GGNCC	3 cut(s)	165, 1013, 1067
CseI	GACGC	1 cut(s)	1015
Csp6I	GTAC	1 cut(s)	414
CspAI	ACCGGT	1 cut(s)	184
CviAII	CATG	8 cut(s)	178, 295, 497, 604, 772, 793, 808, 1081
CviQI	GTAC	1 cut(s)	414
DdeI	CTNAG	2 cut(s)	579, 827
DpnI	GATC	3 cut(s)	85, 342, 837
DpnII	GATC	3 cut(s)	83, 340, 835
Ecl136II	GAGCTC	1 cut(s)	195
Eco24I	GRGCYC	1 cut(s)	197
Eco31I	GGTCTC	1 cut(s)	788
Eco47I	GGWCC	3 cut(s)	165, 1013, 1067
Eco47III	AGCGCT	2 cut(s)	390, 984
Eco53kI	GAGCTC	1 cut(s)	195
EcoICRI	GAGCTC	1 cut(s)	195
EcoO109I	RGGNCCY	1 cut(s)	165
EcoRII	CCWGG	5 cut(s)	670, 725, 751, 916, 933
EcoT22I	ATGCAT	1 cut(s)	410
EcoT38I	GRGCYC	1 cut(s)	197
Esp3I	CGTCTC	2 cut(s)	241, 280
FaeI	CATG	8 cut(s)	181, 298, 500, 607, 775, 796, 811, 1084
FalI	AAGNNNNNCTT	2 cut(s)	704, 736
FaqI	GGGAC	3 cut(s)	151, 1026, 1076
FatI	CATG	8 cut(s)	177, 294, 496, 603, 771, 792, 807, 1080
FauNDI	CATATG	2 cut(s)	346, 476
FbaI	TGATCA	1 cut(s)	835
Fnu4HI	GCNGC	2 cut(s)	423, 951
FriOI	GRGCYC	1 cut(s)	197
Fsp4HI	GCNGC	2 cut(s)	423, 951
FspBI	CTAG	2 cut(s)	53, 1049
GlaI	GCGC	2 cut(s)	390, 984
GluI	GCNGC	2 cut(s)	423, 951
GsaI	CCCAGC	1 cut(s)	1013
GsuI	CTGGAG	2 cut(s)	53, 774
HaeII	RGCGCY	2 cut(s)	392, 986
HaeIII	GGCC	1 cut(s)	933
HapII	CCGG	1 cut(s)	185
HgaI	GACGC	1 cut(s)	1015
HhaI	GCGC	2 cut(s)	391, 985
Hin1II	CATG	8 cut(s)	181, 298, 500, 607, 775, 796, 811, 1084
Hin6I	GCGC	2 cut(s)	389, 983
HinP1I	GCGC	2 cut(s)	389, 983
HindIII	AAGCTT	2 cut(s)	17, 202
HinfI	GANTC	4 cut(s)	381, 493, 664, 748
HpaII	CCGG	1 cut(s)	185
HphI	GGTGA	5 cut(s)	199, 800, 830, 963, 1088
Hpy166II	GTNNAC	1 cut(s)	228
Hpy188I	TCNGA	2 cut(s)	142, 580
Hpy188III	TCNNGA	7 cut(s)	13, 131, 178, 354, 438, 772, 961
Hpy8I	GTNNAC	1 cut(s)	228
Hpy99I	CGWCG	1 cut(s)	1009
HpyAV	CCTTC	4 cut(s)	837, 923, 1011, 1036
HpyCH4III	ACNGT	3 cut(s)	253, 418, 649
HpyCH4V	TGCA	6 cut(s)	41, 89, 294, 408, 653, 679
HpyF10VI	GCNNNNNNNGC	6 cut(s)	95, 201, 397, 803, 950, 1006
HpyF3I	CTNAG	2 cut(s)	579, 827
Hsp92II	CATG	8 cut(s)	181, 298, 500, 607, 775, 796, 811, 1084
HspAI	GCGC	2 cut(s)	389, 983
Ksp22I	TGATCA	1 cut(s)	835
Kzo9I	GATC	3 cut(s)	83, 340, 835
LmnI	GCTCC	4 cut(s)	4, 34, 846, 1054
Lsp1109I	GCAGC	2 cut(s)	409, 962
LweI	GCATC	3 cut(s)	519, 765, 966
MaeI	CTAG	2 cut(s)	53, 1049
MaeIII	GTNAC	7 cut(s)	58, 73, 131, 321, 685, 788, 937
MalI	GATC	3 cut(s)	85, 342, 837
MboI	GATC	3 cut(s)	83, 340, 835
MboII	GAAGA	5 cut(s)	497, 565, 659, 703, 724
MfeI	CAATTG	1 cut(s)	1017
MflI	RGATCY	1 cut(s)	83
MhlI	GDGCHC	2 cut(s)	197, 894
MluCI	AATT	8 cut(s)	103, 150, 326, 457, 519, 701, 735, 1017
MlyI	GAGTC	2 cut(s)	502, 673
MmeI	TCCRAC	1 cut(s)	678
MnlI	CCTC	8 cut(s)	18, 257, 280, 289, 640, 749, 892, 984
Mph1103I	ATGCAT	1 cut(s)	410
MseI	TTAA	2 cut(s)	516, 734
MspA1I	CMGCKG	1 cut(s)	953
MspI	CCGG	1 cut(s)	185
MspR9I	CCNGG	5 cut(s)	672, 727, 753, 918, 935
MunI	CAATTG	1 cut(s)	1017
Mva1269I	GAATGC	1 cut(s)	877
MvaI	CCWGG	5 cut(s)	672, 727, 753, 918, 935
MvnI	CGCG	1 cut(s)	379
MwoI	GCNNNNNNNGC	6 cut(s)	95, 201, 397, 803, 950, 1006
NdeI	CATATG	2 cut(s)	346, 476
NdeII	GATC	3 cut(s)	83, 340, 835
NlaIII	CATG	8 cut(s)	181, 298, 500, 607, 775, 796, 811, 1084
NlaIV	GGNNCC	7 cut(s)	6, 36, 167, 760, 999, 1014, 1069
NmuCI	GTSAC	4 cut(s)	73, 131, 321, 788
NsiI	ATGCAT	1 cut(s)	410
NspI	RCATGY	1 cut(s)	298
PagI	TCATGA	2 cut(s)	177, 771
PctI	GAATGC	1 cut(s)	877
PfeI	GAWTC	2 cut(s)	381, 748
PfoI	TCCNGGA	3 cut(s)	670, 751, 916
PinAI	ACCGGT	1 cut(s)	184
PkrI	GCNGC	2 cut(s)	424, 952
PleI	GAGTC	2 cut(s)	501, 672
PpsI	GAGTC	2 cut(s)	501, 672
PpuMI	RGGWCCY	1 cut(s)	165
Psp124BI	GAGCTC	1 cut(s)	197
Psp5II	RGGWCCY	1 cut(s)	165
Psp6I	CCWGG	5 cut(s)	670, 725, 751, 916, 933
PspFI	CCCAGC	1 cut(s)	1009
PspGI	CCWGG	5 cut(s)	670, 725, 751, 916, 933
PspN4I	GGNNCC	7 cut(s)	6, 36, 167, 760, 999, 1014, 1069
PspPI	GGNCC	3 cut(s)	165, 1013, 1067
PspPPI	RGGWCCY	1 cut(s)	165
PstNI	CAGNNNCTG	1 cut(s)	422
PsuI	RGATCY	1 cut(s)	83
PvuII	CAGCTG	1 cut(s)	953
RsaI	GTAC	1 cut(s)	415
RsaNI	GTAC	1 cut(s)	414
SacI	GAGCTC	1 cut(s)	197
SaqAI	TTAA	2 cut(s)	516, 734
SatI	GCNGC	2 cut(s)	423, 951
Sau3AI	GATC	3 cut(s)	83, 340, 835
Sau96I	GGNCC	3 cut(s)	165, 1013, 1067
SchI	GAGTC	2 cut(s)	502, 673
ScrFI	CCNGG	5 cut(s)	672, 727, 753, 918, 935
SduI	GDGCHC	2 cut(s)	197, 894
SfaNI	GCATC	3 cut(s)	519, 765, 966
SinI	GGWCC	3 cut(s)	165, 1013, 1067
Sse9I	AATT	8 cut(s)	103, 150, 326, 457, 519, 701, 735, 1017
SsiI	CCGC	1 cut(s)	1052
SspMI	CTAG	2 cut(s)	53, 1049
SstI	GAGCTC	1 cut(s)	197
StyD4I	CCNGG	5 cut(s)	670, 725, 751, 916, 933
TaaI	ACNGT	3 cut(s)	253, 418, 649
TaqI	TCGA	2 cut(s)	632, 1004
TasI	AATT	8 cut(s)	103, 150, 326, 457, 519, 701, 735, 1017
TfiI	GAWTC	2 cut(s)	381, 748
Tru1I	TTAA	2 cut(s)	516, 734
Tru9I	TTAA	2 cut(s)	516, 734
TscAI	CASTG	2 cut(s)	256, 618
TseFI	GTSAC	4 cut(s)	73, 131, 321, 788
TseI	GCWGC	2 cut(s)	422, 950
Tsp45I	GTSAC	4 cut(s)	73, 131, 321, 788
TspDTI	ATGAA	4 cut(s)	632, 760, 1015, 1097
TspGWI	ACGGA	4 cut(s)	223, 262, 491, 1080
TspRI	CASTG	2 cut(s)	256, 618
VpaK11BI	GGWCC	3 cut(s)	165, 1013, 1067
XapI	RAATTY	1 cut(s)	519
XceI	RCATGY	1 cut(s)	298
XspI	CTAG	2 cut(s)	53, 1049
Zsp2I	ATGCAT	1 cut(s)	410

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.