Zinc finger BED domain-containing protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_3g23651 |
| prunus_persica | Prupe.3G104400_v2.0.a1 Prupe.4G218200_v2.0.a1 Prupe.4G218200_v2.0.a1 |
| rosa_multiflora | Rmu_sc0007415.1_g000035 |
| rosa_samantha | Rh1AG225100 Rh1CG209900 Rh2BG198500 Rh5AG299700 Rh7AG423800 |
| rosa_wichuraiana | Rw4G032200 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 258, 385 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 255, 382 |
| AcsI | RAATTY | 1 cut(s) | 283 |
| AdeI | CACNNNGTG | 2 cut(s) | 255, 382 |
| AfaI | GTAC | 3 cut(s) | 75, 97, 203 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 255, 382 |
| AgsI | TTSAA | 1 cut(s) | 30 |
| AhlI | ACTAGT | 1 cut(s) | 176 |
| AluBI | AGCT | 1 cut(s) | 359 |
| AluI | AGCT | 1 cut(s) | 359 |
| Alw26I | GTCTC | 1 cut(s) | 289 |
| AoxI | GGCC | 1 cut(s) | 331 |
| ApoI | RAATTY | 1 cut(s) | 283 |
| AspS9I | GGNCC | 1 cut(s) | 331 |
| BanI | GGYRCC | 2 cut(s) | 258, 385 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 112, 144 |
| BcoDI | GTCTC | 1 cut(s) | 289 |
| BcuI | ACTAGT | 1 cut(s) | 176 |
| BfaI | CTAG | 5 cut(s) | 93, 117, 177, 186, 353 |
| BmcAI | AGTACT | 2 cut(s) | 97, 203 |
| BmgT120I | GGNCC | 1 cut(s) | 331 |
| BmiI | GGNNCC | 2 cut(s) | 260, 387 |
| BmsI | GCATC | 1 cut(s) | 179 |
| BpuEI | CTTGAG | 1 cut(s) | 36 |
| BsaJI | CCNNGG | 1 cut(s) | 334 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 255, 382 |
| BseDI | CCNNGG | 1 cut(s) | 334 |
| BseGI | GGATG | 3 cut(s) | 175, 245, 372 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 255, 382 |
| BshFI | GGCC | 1 cut(s) | 333 |
| BshNI | GGYRCC | 2 cut(s) | 258, 385 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 255, 382 |
| BsmAI | GTCTC | 1 cut(s) | 289 |
| BsmI | GAATGC | 1 cut(s) | 130 |
| BsnI | GGCC | 1 cut(s) | 333 |
| Bsp1407I | TGTACA | 1 cut(s) | 73 |
| BspANI | GGCC | 1 cut(s) | 333 |
| BspLI | GGNNCC | 2 cut(s) | 260, 387 |
| BspT107I | GGYRCC | 2 cut(s) | 258, 385 |
| BsrGI | TGTACA | 1 cut(s) | 73 |
| BssECI | CCNNGG | 1 cut(s) | 334 |
| BssT1I | CCWWGG | 1 cut(s) | 334 |
| Bst4CI | ACNGT | 1 cut(s) | 206 |
| BstAUI | TGTACA | 1 cut(s) | 73 |
| BstDEI | CTNAG | 1 cut(s) | 402 |
| BstF5I | GGATG | 3 cut(s) | 175, 245, 372 |
| BstMAI | GTCTC | 1 cut(s) | 289 |
| BstNSI | RCATGY | 1 cut(s) | 225 |
| BsuRI | GGCC | 1 cut(s) | 333 |
| BtsCI | GGATG | 3 cut(s) | 175, 245, 372 |
| Cfr13I | GGNCC | 1 cut(s) | 331 |
| Csp6I | GTAC | 3 cut(s) | 74, 96, 202 |
| CviAII | CATG | 2 cut(s) | 222, 299 |
| CviJI | RGCY | 6 cut(s) | 83, 115, 184, 216, 333, 359 |
| CviKI_1 | RGCY | 6 cut(s) | 83, 115, 184, 216, 333, 359 |
| CviQI | GTAC | 3 cut(s) | 74, 96, 202 |
| DdeI | CTNAG | 1 cut(s) | 402 |
| DraIII | CACNNNGTG | 2 cut(s) | 255, 382 |
| Eco130I | CCWWGG | 1 cut(s) | 334 |
| EcoRI | GAATTC | 1 cut(s) | 283 |
| EcoT14I | CCWWGG | 1 cut(s) | 334 |
| EcoT22I | ATGCAT | 2 cut(s) | 194, 223 |
| ErhI | CCWWGG | 1 cut(s) | 334 |
| FaeI | CATG | 2 cut(s) | 225, 302 |
| FaiI | YATR | 5 cut(s) | 194, 196, 219, 223, 300 |
| FatI | CATG | 2 cut(s) | 221, 298 |
| FauNDI | CATATG | 1 cut(s) | 194 |
| FokI | GGATG | 3 cut(s) | 182, 232, 359 |
| FspBI | CTAG | 5 cut(s) | 93, 117, 177, 186, 353 |
| HaeIII | GGCC | 1 cut(s) | 333 |
| Hin1II | CATG | 2 cut(s) | 225, 302 |
| HinfI | GANTC | 1 cut(s) | 11 |
| Hpy188I | TCNGA | 1 cut(s) | 16 |
| HpyCH4III | ACNGT | 1 cut(s) | 206 |
| HpyCH4V | TGCA | 3 cut(s) | 192, 198, 221 |
| HpyF3I | CTNAG | 1 cut(s) | 402 |
| Hsp92II | CATG | 2 cut(s) | 225, 302 |
| LmnI | GCTCC | 1 cut(s) | 142 |
| LpnPI | CCDG | 1 cut(s) | 84 |
| LweI | GCATC | 1 cut(s) | 179 |
| MaeI | CTAG | 5 cut(s) | 93, 117, 177, 186, 353 |
| MluCI | AATT | 1 cut(s) | 283 |
| MmeI | TCCRAC | 1 cut(s) | 71 |
| MnlI | CCTC | 3 cut(s) | 54, 160, 322 |
| Mph1103I | ATGCAT | 2 cut(s) | 194, 223 |
| Mva1269I | GAATGC | 1 cut(s) | 130 |
| NdeI | CATATG | 1 cut(s) | 194 |
| NlaIII | CATG | 2 cut(s) | 225, 302 |
| NlaIV | GGNNCC | 2 cut(s) | 260, 387 |
| NsiI | ATGCAT | 2 cut(s) | 194, 223 |
| NspI | RCATGY | 1 cut(s) | 225 |
| PctI | GAATGC | 1 cut(s) | 130 |
| PfeI | GAWTC | 1 cut(s) | 11 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 255, 382 |
| PspN4I | GGNNCC | 2 cut(s) | 260, 387 |
| PspPI | GGNCC | 1 cut(s) | 331 |
| RsaI | GTAC | 3 cut(s) | 75, 97, 203 |
| RsaNI | GTAC | 3 cut(s) | 74, 96, 202 |
| Sau96I | GGNCC | 1 cut(s) | 331 |
| ScaI | AGTACT | 2 cut(s) | 97, 203 |
| SetI | ASST | 4 cut(s) | 46, 94, 354, 361 |
| SfaNI | GCATC | 1 cut(s) | 179 |
| SmlI | CTYRAG | 1 cut(s) | 51 |
| SmoI | CTYRAG | 1 cut(s) | 51 |
| SpeI | ACTAGT | 1 cut(s) | 176 |
| Sse9I | AATT | 1 cut(s) | 283 |
| SspMI | CTAG | 5 cut(s) | 93, 117, 177, 186, 353 |
| StyI | CCWWGG | 1 cut(s) | 334 |
| TaaI | ACNGT | 1 cut(s) | 206 |
| TaqI | TCGA | 1 cut(s) | 274 |
| TasI | AATT | 1 cut(s) | 283 |
| TatI | WGTACW | 3 cut(s) | 73, 95, 201 |
| TfiI | GAWTC | 1 cut(s) | 11 |
| TspDTI | ATGAA | 2 cut(s) | 47, 312 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 255, 382 |
| XapI | RAATTY | 1 cut(s) | 283 |
| XceI | RCATGY | 1 cut(s) | 225 |
| XspI | CTAG | 5 cut(s) | 93, 117, 177, 186, 353 |
| ZrmI | AGTACT | 2 cut(s) | 97, 203 |
| Zsp2I | ATGCAT | 2 cut(s) | 194, 223 |