Prupe.3G132900_v2.0.a1

Reticulon-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0011237
Physical Location & Seq
Reverse (-)
13804145 .. 13806781
2637 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G132900.1

Sequence Viewer

Length: 1335 bp
ATGGATTCGACAGCAGCAGCAACACCTCCTTATCATCATCATTCTCATTCGGAACCACCGTCCAGGACGAAATCAGCCTCACGGCTTGCCCAAAGCGGACAAATTCCTCATCTCTCTCTTGGCCTCATAACATCATCACCCAAGAGAACTCCGTCCCCTTCTGCTCACTCTATCAGATCTTCCGATTCCCTCCCTCTCCGCGAGCTTCTCCTTCTTTCACCTTCACCTCTCCGAAAAAGGTCCAAGGCCCGTCTCACGGATCGACTGGAAATGGCTGATGAGCCCATGGTCGAGGCCGCAGGGCCACGCCGGAGGTGCAAAAGCAGAGGTGCCCAGATGGGCTTATTGGGCTGTGCCTCGCCGAGGAACACTCGAAGGTCGCGGAGGCGGTCAGAGACTGAGATTCGAGAAGATAAAGATTCAGGTTTGGTGGAAGAGATAGCAAAGCCAAGGAAAAGGAGGTCCAAGAAGGAAAAGCTGAGCTTGGTCCTTTCTTTGCCCTCCCCAAGCGCATCATCAATCGATGATGAGTACCGCGGTAGCCTGGATCGAATCGGGCAGCTAATGAACGATCTGATTATGTGGAGAGACGTAGCAAGGTCAAGCCTTTGGTTTGGTTTGGGGTCTCTTTTCTTCTTGTCCTCTTGCTTTGCCAAAGGAATCAACTTTAGCATTTTCTCAGCGATTTCCCAACTAGGACTTTTGTTTTTGGGTGCTTCATTTGTCTCCAACTCAATCAGTCAAAGAAATGGTGTTGAGAAAAAGCTTGATTTCATGCTCAAAGAAAGTGACATTCTTGGTGTAGCCAAAATTATACTTCCTGCTACAAATCTTGCCATATCGAAGACCAGAGCGCTTTTCTCGGGAGAGCCATCCATGACCCTCAAGGTAGCTCCATTCTTTCTTCTGGGAGCGGAGTATGGGCATCTTATAACACTTTGGAGGCTCTGTATGCTTGCTTTTTTTATCAGCTTCACAATCCCAAAACTGTACTCATGCTACTCCATCCAAATGAACCAAAAAGTTGAATGCTTGAAATGGTGGGTGTTGGAAGCATGGGGAGCTTGCTCACACAAAAAGATTGTAGCAGCATCAGCAGCCACAGCTTTTTGGAATCTGTCTTCTGTGAGAACCCGTATCTTCACAGCATTTTTATCTCTTGTAATTCTTCGTTACTGCCGGCAACATATGGTACAACCGCTGGAGAATGGGGAAGCAGAAGTGGAGCAGGAGCAGCAGCAGGCATTGGCGGTGGCGGTGGCAGAACCGGAAGCAGAAGGAAAACAAGAGCAGGAACAGGCATTAGTAGTGGCCAAAGTAGCAAGCAAGCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Reticulon

Protein Analysis

445

Amino Acids

49.29

Weight (kDa)

9.72

Isoelectric Point (pI)

58.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011237)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G20590 AT2G20590 AT2G20590
fragaria_vesca FvH4_6g26620 FvH4_6g26620 FvH4_6g26620
malus_domestica MD09G1242900.v1.1
prunus_persica Prupe.3G132900_v2.0.a1 Prupe.3G133200_v2.0.a1
pyrus_communis pycom09g16120
rosa_chinensis RchiOBHm_Chr2g0127351
rosa_laevigata RLG00000018965
rosa_multiflora Rmu_ssc0000018.1_g000044
rosa_roxburghii Rroxscaffold_2G00116360
rosa_rugosa Rorug02G0275000
rosa_samantha Rh2AG326100 Rh2BG335600 Rh2CG313800 Rh2DG353300
rosa_wichuraiana Rw2G026450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 932
AccB1I GGYRCC 1 cut(s) 329
AccBSI CCGCTC 1 cut(s) 914
AccII CGCG 3 cut(s) 201, 382, 537
AclWI GGATC 2 cut(s) 267, 555
AcoI YGGCCR 1 cut(s) 1311
AcsI RAATTY 1 cut(s) 102
AfaI GTAC 3 cut(s) 533, 992, 1194
AfeI AGCGCT 1 cut(s) 855
AfiI CCNNNNNNNGG 2 cut(s) 256, 363
AgsI TTSAA 2 cut(s) 1028, 1036
AjnI CCWGG 2 cut(s) 62, 543
AluBI AGCT 9 cut(s) 205, 478, 483, 562, 766, 893, 972, 1064, 1106
AluI AGCT 9 cut(s) 205, 478, 483, 562, 766, 893, 972, 1064, 1106
Alw26I GTCTC 5 cut(s) 257, 389, 582, 630, 730
AlwI GGATC 2 cut(s) 267, 555
AlwNI CAGNNNCTG 1 cut(s) 398
Ama87I CYCGRG 1 cut(s) 862
Aor51HI AGCGCT 1 cut(s) 855
AoxI GGCC 5 cut(s) 121, 246, 294, 302, 1311
ApeKI GCWGC 7 cut(s) 14, 17, 559, 1088, 1097, 1234, 1237
ApoI RAATTY 1 cut(s) 102
AspLEI GCGC 2 cut(s) 512, 856
AspS9I GGNCC 5 cut(s) 240, 247, 302, 462, 487
AsuHPI GGTGA 3 cut(s) 129, 210, 216
AvaI CYCGRG 1 cut(s) 862
AvaII GGWCC 3 cut(s) 240, 462, 487
BaeGI GKGCMC 1 cut(s) 334
BalI TGGCCA 1 cut(s) 1313
BanI GGYRCC 1 cut(s) 329
BanII GRGCYC 1 cut(s) 285
BbsI GAAGAC 2 cut(s) 851, 1113
BbvI GCAGC 7 cut(s) 26, 29, 571, 1100, 1109, 1246, 1249
BccI CCATC 3 cut(s) 331, 880, 1013
BceAI ACGGC 1 cut(s) 98
BciT130I CCWGG 2 cut(s) 64, 545
BcoDI GTCTC 5 cut(s) 257, 389, 582, 630, 730
BfaI CTAG 1 cut(s) 695
BfoI RGCGCY 1 cut(s) 857
BglII AGATCT 1 cut(s) 176
BisI GCNGC 8 cut(s) 15, 18, 297, 560, 1089, 1098, 1235, 1238
BlpI GCTNAGC 1 cut(s) 479
BlsI GCNGC 8 cut(s) 16, 19, 298, 561, 1090, 1099, 1236, 1239
Bme1390I CCNGG 2 cut(s) 64, 545
Bme18I GGWCC 3 cut(s) 240, 462, 487
BmeT110I CYCGRG 1 cut(s) 862
BmgT120I GGNCC 5 cut(s) 240, 247, 302, 462, 487
BmiI GGNNCC 2 cut(s) 54, 331
BmrFI CCNGG 2 cut(s) 64, 545
BmsI GCATC 3 cut(s) 521, 934, 1100
BpiI GAAGAC 2 cut(s) 851, 1113
BplI GAGNNNNNCTC 2 cut(s) 355, 387
BpmI CTGGAG 1 cut(s) 1223
Bpu1102I GCTNAGC 1 cut(s) 479
BpuEI CTTGAG 1 cut(s) 869
Bsa29I ATCGAT 1 cut(s) 522
BsaI GGTCTC 1 cut(s) 630
BsaJI CCNNGG 5 cut(s) 243, 285, 362, 449, 535
BsaWI WCCGGW 1 cut(s) 1267
BsaXI ACNNNNNCTCC 2 cut(s) 934, 964
Bsc4I CCNNNNNNNGG 2 cut(s) 256, 363
Bse118I RCCGGY 1 cut(s) 1179
Bse1I ACTGG 1 cut(s) 270
BseBI CCWGG 2 cut(s) 64, 545
BseCI ATCGAT 1 cut(s) 522
BseDI CCNNGG 5 cut(s) 243, 285, 362, 449, 535
BseGI GGATG 2 cut(s) 872, 1005
BseLI CCNNNNNNNGG 2 cut(s) 256, 363
BseMII CTCAG 3 cut(s) 390, 470, 693
BseNI ACTGG 1 cut(s) 270
BseSI GKGCMC 1 cut(s) 334
BseXI GCAGC 7 cut(s) 26, 29, 571, 1100, 1109, 1246, 1249
Bsh1236I CGCG 3 cut(s) 201, 382, 537
BshFI GGCC 5 cut(s) 123, 248, 296, 304, 1313
BshNI GGYRCC 1 cut(s) 329
BshVI ATCGAT 1 cut(s) 522
BsiHKCI CYCGRG 1 cut(s) 862
BsiSI CCGG 3 cut(s) 310, 1180, 1268
BslFI GGGAC 1 cut(s) 139
BslI CCNNNNNNNGG 2 cut(s) 256, 363
BsmAI GTCTC 5 cut(s) 257, 389, 582, 630, 730
BsmBI CGTCTC 2 cut(s) 257, 582
BsmFI GGGAC 1 cut(s) 139
BsmI GAATGC 1 cut(s) 1034
BsnI GGCC 5 cut(s) 123, 248, 296, 304, 1313
Bso31I GGTCTC 1 cut(s) 630
BsoBI CYCGRG 1 cut(s) 862
Bsp1286I GDGCHC 2 cut(s) 285, 334
Bsp143I GATC 4 cut(s) 176, 259, 547, 571
Bsp1720I GCTNAGC 1 cut(s) 479
Bsp19I CCATGG 1 cut(s) 285
BspANI GGCC 5 cut(s) 123, 248, 296, 304, 1313
BspCNI CTCAG 3 cut(s) 391, 471, 692
BspDI ATCGAT 1 cut(s) 522
BspFNI CGCG 3 cut(s) 201, 382, 537
BspLI GGNNCC 2 cut(s) 54, 331
BspPI GGATC 2 cut(s) 267, 555
BspT107I GGYRCC 1 cut(s) 329
BspTNI GGTCTC 1 cut(s) 630
BsrBI CCGCTC 1 cut(s) 914
BsrFI RCCGGY 1 cut(s) 1179
BsrI ACTGG 1 cut(s) 270
BssAI RCCGGY 1 cut(s) 1179
BssECI CCNNGG 5 cut(s) 243, 285, 362, 449, 535
BssMI GATC 4 cut(s) 176, 259, 547, 571
BssT1I CCWWGG 3 cut(s) 243, 285, 449
Bst2UI CCWGG 2 cut(s) 64, 545
Bst4CI ACNGT 2 cut(s) 60, 990
Bst6I CTCTTC 1 cut(s) 429
BstC8I GCNNGC 8 cut(s) 87, 203, 957, 1066, 1181, 1242, 1324, 1328
BstDEI CTNAG 3 cut(s) 399, 479, 679
BstDSI CCRYGG 2 cut(s) 285, 535
BstENI CCTNNNNNAGG 1 cut(s) 361
BstF5I GGATG 2 cut(s) 872, 1005
BstFNI CGCG 3 cut(s) 201, 382, 537
BstH2I RGCGCY 1 cut(s) 857
BstHHI GCGC 2 cut(s) 512, 856
BstKTI GATC 4 cut(s) 179, 262, 550, 574
BstMAI GTCTC 5 cut(s) 257, 389, 582, 630, 730
BstMBI GATC 4 cut(s) 176, 259, 547, 571
BstMWI GCNNNNNNNGC 9 cut(s) 315, 348, 952, 1061, 1094, 1097, 1103, 1234, 1319
BstNI CCWGG 2 cut(s) 64, 545
BstSCI CCNGG 2 cut(s) 62, 543
BstSLI GKGCMC 1 cut(s) 334
BstUI CGCG 3 cut(s) 201, 382, 537
BstV1I GCAGC 7 cut(s) 26, 29, 571, 1100, 1109, 1246, 1249
BstV2I GAAGAC 2 cut(s) 851, 1113
BstX2I RGATCY 1 cut(s) 176
BstYI RGATCY 1 cut(s) 176
Bsu15I ATCGAT 1 cut(s) 522
BsuRI GGCC 5 cut(s) 123, 248, 296, 304, 1313
BsuTUI ATCGAT 1 cut(s) 522
BtgI CCRYGG 2 cut(s) 285, 535
BtsCI GGATG 2 cut(s) 872, 1005
Cac8I GCNNGC 8 cut(s) 87, 203, 957, 1066, 1181, 1242, 1324, 1328
CaiI CAGNNNCTG 1 cut(s) 398
CfoI GCGC 2 cut(s) 512, 856
Cfr10I RCCGGY 1 cut(s) 1179
Cfr13I GGNCC 5 cut(s) 240, 247, 302, 462, 487
Cfr42I CCGCGG 1 cut(s) 538
ClaI ATCGAT 1 cut(s) 522
Csp6I GTAC 3 cut(s) 532, 991, 1193
CviAII CATG 5 cut(s) 286, 775, 877, 996, 1056
CviQI GTAC 3 cut(s) 532, 991, 1193
DdeI CTNAG 3 cut(s) 399, 479, 679
DpnI GATC 4 cut(s) 178, 261, 549, 573
DpnII GATC 4 cut(s) 176, 259, 547, 571
EaeI YGGCCR 1 cut(s) 1311
Eam1104I CTCTTC 1 cut(s) 429
EarI CTCTTC 1 cut(s) 429
Eco130I CCWWGG 3 cut(s) 243, 285, 449
Eco24I GRGCYC 1 cut(s) 285
Eco31I GGTCTC 1 cut(s) 630
Eco47I GGWCC 3 cut(s) 240, 462, 487
Eco47III AGCGCT 1 cut(s) 855
Eco88I CYCGRG 1 cut(s) 862
EcoNI CCTNNNNNAGG 1 cut(s) 361
EcoRII CCWGG 2 cut(s) 62, 543
EcoT14I CCWWGG 3 cut(s) 243, 285, 449
EcoT38I GRGCYC 1 cut(s) 285
ErhI CCWWGG 3 cut(s) 243, 285, 449
Esp3I CGTCTC 2 cut(s) 257, 582
FaeI CATG 5 cut(s) 289, 778, 880, 999, 1059
FalI AAGNNNNNCTT 2 cut(s) 467, 499
FaqI GGGAC 1 cut(s) 139
FatI CATG 5 cut(s) 285, 774, 876, 995, 1055
FauNDI CATATG 1 cut(s) 1188
Fnu4HI GCNGC 8 cut(s) 15, 18, 297, 560, 1089, 1098, 1235, 1238
FokI GGATG 2 cut(s) 859, 992
FriOI GRGCYC 1 cut(s) 285
Fsp4HI GCNGC 8 cut(s) 15, 18, 297, 560, 1089, 1098, 1235, 1238
FspBI CTAG 1 cut(s) 695
GlaI GCGC 2 cut(s) 511, 855
GluI GCNGC 8 cut(s) 15, 18, 297, 560, 1089, 1098, 1235, 1238
GsuI CTGGAG 1 cut(s) 1223
HaeII RGCGCY 1 cut(s) 857
HaeIII GGCC 5 cut(s) 123, 248, 296, 304, 1313
HapII CCGG 3 cut(s) 310, 1180, 1268
HhaI GCGC 2 cut(s) 512, 856
Hin1II CATG 5 cut(s) 289, 778, 880, 999, 1059
Hin6I GCGC 2 cut(s) 510, 854
HinP1I GCGC 2 cut(s) 510, 854
HindIII AAGCTT 1 cut(s) 764
HinfI GANTC 7 cut(s) 5, 185, 403, 419, 552, 660, 1114
HpaII CCGG 3 cut(s) 310, 1180, 1268
HphI GGTGA 3 cut(s) 129, 210, 216
Hpy188I TCNGA 6 cut(s) 52, 176, 184, 233, 394, 576
Hpy188III TCNNGA 2 cut(s) 407, 864
HpyAV CCTTC 6 cut(s) 168, 221, 231, 369, 463, 1271
HpyCH4III ACNGT 2 cut(s) 60, 990
HpyCH4IV ACGT 1 cut(s) 591
HpyCH4V TGCA 1 cut(s) 318
HpyF10VI GCNNNNNNNGC 9 cut(s) 315, 348, 952, 1061, 1094, 1097, 1103, 1234, 1319
HpyF3I CTNAG 3 cut(s) 399, 479, 679
HpySE526I ACGT 1 cut(s) 591
Hsp92II CATG 5 cut(s) 289, 778, 880, 999, 1059
HspAI GCGC 2 cut(s) 510, 854
KroI GCCGGC 1 cut(s) 1179
KroNI GCCGGC 1 cut(s) 1181
KspI CCGCGG 1 cut(s) 538
Kzo9I GATC 4 cut(s) 176, 259, 547, 571
LmnI GCTCC 5 cut(s) 898, 911, 1061, 1225, 1231
Lsp1109I GCAGC 7 cut(s) 26, 29, 571, 1100, 1109, 1246, 1249
LweI GCATC 3 cut(s) 521, 934, 1100
MaeI CTAG 1 cut(s) 695
MaeII ACGT 1 cut(s) 591
MaeIII GTNAC 2 cut(s) 788, 1172
MalI GATC 4 cut(s) 178, 261, 549, 573
MbiI CCGCTC 1 cut(s) 914
MboI GATC 4 cut(s) 176, 259, 547, 571
MboII GAAGA 9 cut(s) 171, 422, 446, 625, 856, 896, 1113, 1132, 1160
MflI RGATCY 1 cut(s) 176
MhlI GDGCHC 2 cut(s) 285, 334
MlsI TGGCCA 1 cut(s) 1313
MluCI AATT 3 cut(s) 102, 810, 1164
MluNI TGGCCA 1 cut(s) 1313
MmeI TCCRAC 2 cut(s) 753, 1029
Mox20I TGGCCA 1 cut(s) 1313
MroNI GCCGGC 1 cut(s) 1179
MscI TGGCCA 1 cut(s) 1313
MslI CAYNNNNRTG 1 cut(s) 1010
Msp20I TGGCCA 1 cut(s) 1313
MspA1I CMGCKG 2 cut(s) 537, 1201
MspI CCGG 3 cut(s) 310, 1180, 1268
MspR9I CCNGG 2 cut(s) 64, 545
Mva1269I GAATGC 1 cut(s) 1034
MvaI CCWGG 2 cut(s) 64, 545
MvnI CGCG 3 cut(s) 201, 382, 537
MwoI GCNNNNNNNGC 9 cut(s) 315, 348, 952, 1061, 1094, 1097, 1103, 1234, 1319
NaeI GCCGGC 1 cut(s) 1181
NcoI CCATGG 1 cut(s) 285
NdeI CATATG 1 cut(s) 1188
NdeII GATC 4 cut(s) 176, 259, 547, 571
NgoMIV GCCGGC 1 cut(s) 1179
NlaIII CATG 5 cut(s) 289, 778, 880, 999, 1059
NlaIV GGNNCC 2 cut(s) 54, 331
NmeAIII GCCGAG 1 cut(s) 387
NmuCI GTSAC 1 cut(s) 788
PcsI WCGNNNNNNNCGW 1 cut(s) 56
PctI GAATGC 1 cut(s) 1034
PdiI GCCGGC 1 cut(s) 1181
PfeI GAWTC 7 cut(s) 5, 185, 403, 419, 552, 660, 1114
PfoI TCCNGGA 1 cut(s) 62
PkrI GCNGC 8 cut(s) 16, 19, 298, 561, 1090, 1099, 1236, 1239
PsiI TTATAA 1 cut(s) 932
Psp6I CCWGG 2 cut(s) 62, 543
PspGI CCWGG 2 cut(s) 62, 543
PspN4I GGNNCC 2 cut(s) 54, 331
PspPI GGNCC 5 cut(s) 240, 247, 302, 462, 487
PstNI CAGNNNCTG 1 cut(s) 398
PsuI RGATCY 1 cut(s) 176
RsaI GTAC 3 cut(s) 533, 992, 1194
RsaNI GTAC 3 cut(s) 532, 991, 1193
RseI CAYNNNNRTG 1 cut(s) 1010
SacII CCGCGG 1 cut(s) 538
SatI GCNGC 8 cut(s) 15, 18, 297, 560, 1089, 1098, 1235, 1238
Sau3AI GATC 4 cut(s) 176, 259, 547, 571
Sau96I GGNCC 5 cut(s) 240, 247, 302, 462, 487
ScrFI CCNGG 2 cut(s) 64, 545
SduI GDGCHC 2 cut(s) 285, 334
SfaNI GCATC 3 cut(s) 521, 934, 1100
Sfr303I CCGCGG 1 cut(s) 538
SgrBI CCGCGG 1 cut(s) 538
SinI GGWCC 3 cut(s) 240, 462, 487
SmiMI CAYNNNNRTG 1 cut(s) 1010
SmlI CTYRAG 1 cut(s) 884
SmoI CTYRAG 1 cut(s) 884
Sse9I AATT 3 cut(s) 102, 810, 1164
SspMI CTAG 1 cut(s) 695
StyD4I CCNGG 2 cut(s) 62, 543
StyI CCWWGG 3 cut(s) 243, 285, 449
TaaI ACNGT 2 cut(s) 60, 990
TaiI ACGT 1 cut(s) 594
TaqI TCGA 8 cut(s) 8, 262, 291, 373, 406, 522, 550, 842
TasI AATT 3 cut(s) 102, 810, 1164
TatI WGTACW 1 cut(s) 990
TauI GCSGC 1 cut(s) 299
TfiI GAWTC 7 cut(s) 5, 185, 403, 419, 552, 660, 1114
TseFI GTSAC 1 cut(s) 788
TseI GCWGC 7 cut(s) 14, 17, 559, 1088, 1097, 1234, 1237
Tsp45I GTSAC 1 cut(s) 788
TspDTI ATGAA 4 cut(s) 581, 708, 763, 1028
TspGWI ACGGA 2 cut(s) 141, 272
VpaK11BI GGWCC 3 cut(s) 240, 462, 487
XagI CCTNNNNNAGG 1 cut(s) 361
XapI RAATTY 1 cut(s) 102
XspI CTAG 1 cut(s) 695
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.