Prupe.3G133200_v2.0.a1

Reticulon-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0011237
Physical Location & Seq
Forward (+)
13853898 .. 13855873
1976 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G133200.1

Sequence Viewer

Length: 666 bp
ATGGATTCGACAGCAGCAGCAACACCTCCTTATCATCATCATTCTCGTTCGGAACCACCGTCCAGGACGAAATCAGCCTCACGGCTTGCCCAAAGCGGACAAATTCCTCATCTCTCTCTTGGCCTCATAACATCATCACCCAAGAGAACTGCGTCCCCTTCTGCTCACTCTATCAGATCTTCCGATTCCCTCCCTCTCCGCGAGCTTCTCCTTCTTTCACCTTCACCTCTCCGAAAAAGGTCCAAGATCCGTCTCACGGATCGACTAGAAATGGTTGATGAGCCCGCGGTCGAGACCGCAGGGCCACGCCGGAGGTGCAAAAGCAGAGGTGCCCAGATGGAAGAGAAGATAAAGATTCGGTACATGCTGCTAACCAATTGTGTAAAATTATGGCTAGCTTTTTTTATCAGCTTCACAATCCCAAAACTGTACTCATGCTACTCCATCCAAATGAACCACAAAGTTGACTGCTTGAAATGGTGGGCGTTGGAAACATGGGGAGCTTCCTCACACAAAAAGATTGTAGCAGCCACAGCTTTTTGGAATCTGTCTTCTGTGAGAACCCGTATCTTCACAGCATTTATATCTCTTGTAATTCTTCGTTACTGCCGGCAACATTTGGCGGTGGCGGTGGCAGAACCGGAAGCAGAAGGAAAACAAGGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Reticulon

Protein Analysis

222

Amino Acids

24.87

Weight (kDa)

10.15

Isoelectric Point (pI)

57.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011237)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G20590 AT2G20590 AT2G20590
fragaria_vesca FvH4_6g26620 FvH4_6g26620 FvH4_6g26620
malus_domestica MD09G1242900.v1.1
prunus_persica Prupe.3G132900_v2.0.a1 Prupe.3G133200_v2.0.a1
pyrus_communis pycom09g16120
rosa_chinensis RchiOBHm_Chr2g0127351
rosa_laevigata RLG00000018965
rosa_multiflora Rmu_ssc0000018.1_g000044
rosa_roxburghii Rroxscaffold_2G00116360
rosa_rugosa Rorug02G0275000
rosa_samantha Rh2AG326100 Rh2BG335600 Rh2CG313800 Rh2DG353300
rosa_wichuraiana Rw2G026450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 329
AccII CGCG 2 cut(s) 201, 287
AciI CCGC 7 cut(s) 96, 199, 285, 287, 297, 623, 629
AclWI GGATC 2 cut(s) 241, 267
AcsI RAATTY 1 cut(s) 102
AfaI GTAC 2 cut(s) 362, 431
AfiI CCNNNNNNNGG 1 cut(s) 256
AgsI TTSAA 1 cut(s) 475
AjnI CCWGG 1 cut(s) 62
AluBI AGCT 5 cut(s) 205, 398, 411, 503, 536
AluI AGCT 5 cut(s) 205, 398, 411, 503, 536
Alw26I GTCTC 2 cut(s) 257, 287
AlwI GGATC 2 cut(s) 241, 267
AoxI GGCC 2 cut(s) 121, 302
ApeKI GCWGC 4 cut(s) 14, 17, 367, 527
ApoI RAATTY 1 cut(s) 102
AspS9I GGNCC 2 cut(s) 240, 302
AsuHPI GGTGA 3 cut(s) 129, 210, 216
AsuNHI GCTAGC 1 cut(s) 394
AvaII GGWCC 1 cut(s) 240
BaeGI GKGCMC 1 cut(s) 334
BanI GGYRCC 1 cut(s) 329
BanII GRGCYC 1 cut(s) 285
BbsI GAAGAC 1 cut(s) 543
BbvI GCAGC 4 cut(s) 26, 29, 354, 539
BccI CCATC 2 cut(s) 331, 452
BceAI ACGGC 1 cut(s) 98
BciT130I CCWGG 1 cut(s) 64
BcoDI GTCTC 2 cut(s) 257, 287
BfaI CTAG 2 cut(s) 266, 395
BglII AGATCT 1 cut(s) 176
BisI GCNGC 4 cut(s) 15, 18, 368, 528
BlsI GCNGC 4 cut(s) 16, 19, 369, 529
Bme1390I CCNGG 1 cut(s) 64
Bme18I GGWCC 1 cut(s) 240
BmgT120I GGNCC 2 cut(s) 240, 302
BmiI GGNNCC 2 cut(s) 54, 331
BmrFI CCNGG 1 cut(s) 64
BmtI GCTAGC 1 cut(s) 398
BpiI GAAGAC 1 cut(s) 543
BsaI GGTCTC 1 cut(s) 287
BsaJI CCNNGG 1 cut(s) 285
BsaWI WCCGGW 1 cut(s) 640
Bsc4I CCNNNNNNNGG 1 cut(s) 256
Bse118I RCCGGY 1 cut(s) 609
BseBI CCWGG 1 cut(s) 64
BseDI CCNNGG 1 cut(s) 285
BseGI GGATG 1 cut(s) 444
BseLI CCNNNNNNNGG 1 cut(s) 256
BseSI GKGCMC 1 cut(s) 334
BseXI GCAGC 4 cut(s) 26, 29, 354, 539
Bsh1236I CGCG 2 cut(s) 201, 287
Bsh1285I CGRYCG 1 cut(s) 291
BshFI GGCC 2 cut(s) 123, 304
BshNI GGYRCC 1 cut(s) 329
BsiEI CGRYCG 1 cut(s) 291
BsiSI CCGG 3 cut(s) 310, 610, 641
BslFI GGGAC 1 cut(s) 139
BslI CCNNNNNNNGG 1 cut(s) 256
BsmAI GTCTC 2 cut(s) 257, 287
BsmBI CGTCTC 1 cut(s) 257
BsmFI GGGAC 1 cut(s) 139
BsnI GGCC 2 cut(s) 123, 304
Bso31I GGTCTC 1 cut(s) 287
Bsp1286I GDGCHC 2 cut(s) 285, 334
Bsp143I GATC 3 cut(s) 176, 246, 259
BspACI CCGC 7 cut(s) 96, 199, 285, 287, 297, 623, 629
BspANI GGCC 2 cut(s) 123, 304
BspFNI CGCG 2 cut(s) 201, 287
BspLI GGNNCC 2 cut(s) 54, 331
BspOI GCTAGC 1 cut(s) 398
BspPI GGATC 2 cut(s) 241, 267
BspT107I GGYRCC 1 cut(s) 329
BspTNI GGTCTC 1 cut(s) 287
BsrFI RCCGGY 1 cut(s) 609
BssAI RCCGGY 1 cut(s) 609
BssECI CCNNGG 1 cut(s) 285
BssMI GATC 3 cut(s) 176, 246, 259
Bst2UI CCWGG 1 cut(s) 64
Bst4CI ACNGT 2 cut(s) 60, 429
Bst6I CTCTTC 1 cut(s) 336
BstC8I GCNNGC 5 cut(s) 87, 203, 285, 396, 611
BstDSI CCRYGG 1 cut(s) 285
BstF5I GGATG 1 cut(s) 444
BstFNI CGCG 2 cut(s) 201, 287
BstKTI GATC 3 cut(s) 179, 249, 262
BstMAI GTCTC 2 cut(s) 257, 287
BstMBI GATC 3 cut(s) 176, 246, 259
BstMCI CGRYCG 1 cut(s) 291
BstMWI GCNNNNNNNGC 2 cut(s) 315, 533
BstNI CCWGG 1 cut(s) 64
BstNSI RCATGY 1 cut(s) 367
BstSCI CCNGG 1 cut(s) 62
BstSLI GKGCMC 1 cut(s) 334
BstUI CGCG 2 cut(s) 201, 287
BstV1I GCAGC 4 cut(s) 26, 29, 354, 539
BstV2I GAAGAC 1 cut(s) 543
BstX2I RGATCY 2 cut(s) 176, 246
BstYI RGATCY 2 cut(s) 176, 246
BsuRI GGCC 2 cut(s) 123, 304
BtgI CCRYGG 1 cut(s) 285
BtsCI GGATG 1 cut(s) 444
Cac8I GCNNGC 5 cut(s) 87, 203, 285, 396, 611
Cfr10I RCCGGY 1 cut(s) 609
Cfr13I GGNCC 2 cut(s) 240, 302
Cfr42I CCGCGG 1 cut(s) 288
CseI GACGC 1 cut(s) 141
Csp6I GTAC 2 cut(s) 361, 430
CviAII CATG 3 cut(s) 364, 435, 495
CviQI GTAC 2 cut(s) 361, 430
DpnI GATC 3 cut(s) 178, 248, 261
DpnII GATC 3 cut(s) 176, 246, 259
Eam1104I CTCTTC 1 cut(s) 336
EarI CTCTTC 1 cut(s) 336
Eco24I GRGCYC 1 cut(s) 285
Eco31I GGTCTC 1 cut(s) 287
Eco47I GGWCC 1 cut(s) 240
EcoRII CCWGG 1 cut(s) 62
EcoT38I GRGCYC 1 cut(s) 285
Esp3I CGTCTC 1 cut(s) 257
FaeI CATG 3 cut(s) 367, 438, 498
FaiI YATR 6 cut(s) 128, 365, 391, 436, 496, 584
FaqI GGGAC 1 cut(s) 139
FatI CATG 3 cut(s) 363, 434, 494
FauI CCCGC 1 cut(s) 292
Fnu4HI GCNGC 4 cut(s) 15, 18, 368, 528
FokI GGATG 1 cut(s) 431
FriOI GRGCYC 1 cut(s) 285
Fsp4HI GCNGC 4 cut(s) 15, 18, 368, 528
FspBI CTAG 2 cut(s) 266, 395
GluI GCNGC 4 cut(s) 15, 18, 368, 528
HaeIII GGCC 2 cut(s) 123, 304
HapII CCGG 3 cut(s) 310, 610, 641
HgaI GACGC 1 cut(s) 141
Hin1II CATG 3 cut(s) 367, 438, 498
HincII GTYRAC 1 cut(s) 466
HindII GTYRAC 1 cut(s) 466
HinfI GANTC 4 cut(s) 5, 185, 355, 544
HpaII CCGG 3 cut(s) 310, 610, 641
HphI GGTGA 3 cut(s) 129, 210, 216
Hpy166II GTNNAC 1 cut(s) 466
Hpy188I TCNGA 4 cut(s) 52, 176, 184, 233
Hpy188III TCNNGA 1 cut(s) 292
Hpy8I GTNNAC 1 cut(s) 466
HpyAV CCTTC 4 cut(s) 168, 221, 231, 644
HpyCH4III ACNGT 2 cut(s) 60, 429
HpyCH4V TGCA 1 cut(s) 318
HpyF10VI GCNNNNNNNGC 2 cut(s) 315, 533
Hsp92II CATG 3 cut(s) 367, 438, 498
KroI GCCGGC 1 cut(s) 609
KroNI GCCGGC 1 cut(s) 611
KspI CCGCGG 1 cut(s) 288
Kzo9I GATC 3 cut(s) 176, 246, 259
LmnI GCTCC 1 cut(s) 500
LpnPI CCDG 7 cut(s) 49, 76, 285, 323, 347, 623, 654
Lsp1109I GCAGC 4 cut(s) 26, 29, 354, 539
MaeI CTAG 2 cut(s) 266, 395
MaeIII GTNAC 1 cut(s) 602
MalI GATC 3 cut(s) 178, 248, 261
MboI GATC 3 cut(s) 176, 246, 259
MboII GAAGA 6 cut(s) 171, 353, 358, 543, 562, 590
MfeI CAATTG 1 cut(s) 376
MflI RGATCY 2 cut(s) 176, 246
MhlI GDGCHC 2 cut(s) 285, 334
MluCI AATT 4 cut(s) 102, 376, 386, 594
MmeI TCCRAC 1 cut(s) 468
MroNI GCCGGC 1 cut(s) 609
MslI CAYNNNNRTG 1 cut(s) 449
MspA1I CMGCKG 1 cut(s) 287
MspI CCGG 3 cut(s) 310, 610, 641
MspR9I CCNGG 1 cut(s) 64
MunI CAATTG 1 cut(s) 376
MvaI CCWGG 1 cut(s) 64
MvnI CGCG 2 cut(s) 201, 287
MwoI GCNNNNNNNGC 2 cut(s) 315, 533
NaeI GCCGGC 1 cut(s) 611
NdeII GATC 3 cut(s) 176, 246, 259
NgoMIV GCCGGC 1 cut(s) 609
NheI GCTAGC 1 cut(s) 394
NlaIII CATG 3 cut(s) 367, 438, 498
NlaIV GGNNCC 2 cut(s) 54, 331
NspI RCATGY 1 cut(s) 367
PcsI WCGNNNNNNNCGW 1 cut(s) 56
PdiI GCCGGC 1 cut(s) 611
PfeI GAWTC 4 cut(s) 5, 185, 355, 544
PfoI TCCNGGA 1 cut(s) 62
PkrI GCNGC 4 cut(s) 16, 19, 369, 529
Psp6I CCWGG 1 cut(s) 62
PspGI CCWGG 1 cut(s) 62
PspN4I GGNNCC 2 cut(s) 54, 331
PspPI GGNCC 2 cut(s) 240, 302
PsuI RGATCY 2 cut(s) 176, 246
RsaI GTAC 2 cut(s) 362, 431
RsaNI GTAC 2 cut(s) 361, 430
RseI CAYNNNNRTG 1 cut(s) 449
SacII CCGCGG 1 cut(s) 288
SatI GCNGC 4 cut(s) 15, 18, 368, 528
Sau3AI GATC 3 cut(s) 176, 246, 259
Sau96I GGNCC 2 cut(s) 240, 302
ScrFI CCNGG 1 cut(s) 64
SduI GDGCHC 2 cut(s) 285, 334
Sfr303I CCGCGG 1 cut(s) 288
SgrBI CCGCGG 1 cut(s) 288
SinI GGWCC 1 cut(s) 240
SmiMI CAYNNNNRTG 1 cut(s) 449
Sse9I AATT 4 cut(s) 102, 376, 386, 594
SsiI CCGC 7 cut(s) 96, 199, 285, 287, 297, 623, 629
SspMI CTAG 2 cut(s) 266, 395
StyD4I CCNGG 1 cut(s) 62
TaaI ACNGT 2 cut(s) 60, 429
TaqI TCGA 3 cut(s) 8, 262, 291
TasI AATT 4 cut(s) 102, 376, 386, 594
TatI WGTACW 1 cut(s) 429
TfiI GAWTC 4 cut(s) 5, 185, 355, 544
TseI GCWGC 4 cut(s) 14, 17, 367, 527
TspDTI ATGAA 1 cut(s) 467
TspGWI ACGGA 2 cut(s) 239, 272
VpaK11BI GGWCC 1 cut(s) 240
XapI RAATTY 1 cut(s) 102
XceI RCATGY 1 cut(s) 367
XspI CTAG 2 cut(s) 266, 395
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.