Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0008533

Physical Location & Seq

Genomic Coordinates Forward (+)

19893463 .. 19897582

Gene Structure 4120 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G183700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1380 bp

ATGAGTGCCTATCTCTCTCTTCGCCACCGCTCTTTCACTTACCTCAATCGCCACCTCACATCCTCACCCTTCTCCACCACCACCTCCAAACTCCCCACCCTTTACGAACCAGCTGCCGCCGCCACCCAAAACGACGACGTCCCCACCACAACCCTCCAACTCCTCTCATGGGGCAGAGGCGCCTCGGGCCAACTCGGCGGAGGAATCGAAGAACTTCGTCTCTACCCAACCCCTGTCGCCAACCTCGTCGTTCCCGCCTCATCCTTCACCCTTTCACCAACCCAAGGCCGAATTCAAATACCCAATTGCTCAGAAACAAAGAACAATGCCCATGGCAGTGTTGTAGAGGTGGGTATTTCTTGTGGGCTTTTCCACTCGTCGCTGTTGGTGGATGAAAAGCTCTGGATTTGGGGTAAAGGCGATGGCGGTCGACTTGGGTTTGGACATGAGAATTCTCTGTTTCTGCCCACTTTGAACCCGCATTTGGATTCGGTTCGCTTCGTAGCGCTTGGTGGATTGCATTCTGTTGCGCTCACCTCCCTCGGCCAGGTCTATACTTGGGGTTATGGTGGTTTTGGTGCACTTGGACATTCTGTTTATACTAGAGAATTGTTCCCTAGATTGGTGGAAGGCTCATGGAGTGGGAAAATACATCATATTTCAACTAGTGGGACACATACTGCTGCAATCACGAAATCAGGAGAACTTTATACTTGGGGTCGAGATGAAGGGGATGGTAGATTGGGACTTGGTCCTAATCGGGGCCCAAATGAGGGTGGTGGACTAAGCATACCCTCCAAAGTAAAAGCATTACCTGTGCCTGCGGCTGCTGTTTCTTGTGGAGGGTTTTTCACAATGGTACTGACAGAAGATGGGGAACTTTGGAATTGGGGAGCAAACTCTAACTATGAGCTTGGAAGAGGCAATAAGGTTGGTGGTTGGCAACCAAAACCAGTTCCTAGTCTTGTAGGTGTCCGTATCATTCAGATAGAAAGTGGTGGATATCATTCTCTTGCGTTAACTGATGAAGGTAAAGTGCTTTCATGGGGACATGGTGGGCATGGTCAGTTGGGCAACTCTTCTATCCAAAGTCAGAAAACACCTACAGTTGTTGAGGCTTTAACTGACGAGCGTGTCATCTATATTGCTTGTGGAGGTTCATCTTCAGCAGCTATAACAGATAAAGGAAAGTTGTATATGTGGGGAAACACCAAAGATTCTCAATTAGGAGTTCCTGGGCTTCCAGAGATACAACCATCCCCTGTTGAAGTCAAGTTCTTAATGGAGGATGATGGATTGGGACCCCACAATGTGCTGTCTGTTGCAGTTGGTGCTTCTCATGCCATGTGCTTGGTTTCAAGGGATGGAATGTCCAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RCC1

Protein Analysis

460

Amino Acids

48.57

Weight (kDa)

6.46

Isoelectric Point (pI)

37.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008533)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60870 AT5G60870 AT5G60870 AT5G60870
fragaria_vesca	FvH4_6g39230 FvH4_6g39230
malus_domestica	MD09G1144200.v1.1
prunus_persica	Prupe.3G183700_v2.0.a1 Prupe.3G183700_v2.0.a1
pyrus_communis	pycom09g06360 pycom17g12330
rosa_chinensis	RchiOBHm_Chr2g0153071
rosa_laevigata	RLG00000020674
rosa_multiflora	Rmu_sc0000218.1_g000027 Rmu_sc0037109.1_g000001
rosa_roxburghii	Rroxscaffold_2G00095220 Rroxscaffold_2G00095250
rosa_rugosa	Rorug02G0437100
rosa_samantha	Rh2AG499300 Rh2BG510600 Rh2CG485700 Rh2DG522300
rosa_wichuraiana	Rw2G040980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1133
AatII	GACGTC	1 cut(s)	141
AccB1I	GGYRCC	1 cut(s)	179
AccBSI	CCGCTC	1 cut(s)	30
AccI	GTMKAC	1 cut(s)	430
AciI	CCGC	8 cut(s)	28, 117, 120, 198, 255, 426, 479, 824
AcoI	YGGCCR	1 cut(s)	544
AcsI	RAATTY	2 cut(s)	291, 451
AcuI	CTGAAG	1 cut(s)	1149
AcyI	GRCGYC	2 cut(s)	138, 180
AdeI	CACNNNGTG	1 cut(s)	1312
AfaI	GTAC	1 cut(s)	861
AfeI	AGCGCT	1 cut(s)	507
AfiI	CCNNNNNNNGG	8 cut(s)	169, 284, 484, 547, 622, 761, 772, 773
AgsI	TTSAA	5 cut(s)	296, 475, 663, 1268, 1359
AhlI	ACTAGT	1 cut(s)	665
AjnI	CCWGG	2 cut(s)	546, 1234
AjuI	GAANNNNNNNTTGG	4 cut(s)	276, 308, 467, 499
AluBI	AGCT	4 cut(s)	113, 400, 913, 1172
AluI	AGCT	4 cut(s)	113, 400, 913, 1172
Alw21I	GWGCWC	1 cut(s)	583
Alw26I	GTCTC	1 cut(s)	224
Alw44I	GTGCAC	1 cut(s)	579
Ama87I	CYCGRG	1 cut(s)	184
Aor51HI	AGCGCT	1 cut(s)	507
AoxI	GGCC	4 cut(s)	187, 286, 544, 763
ApaI	GGGCCC	1 cut(s)	767
ApaLI	GTGCAC	1 cut(s)	579
ApeKI	GCWGC	4 cut(s)	113, 683, 827, 1169
ApoI	RAATTY	2 cut(s)	291, 451
Asp700I	GAANNNNTTC	1 cut(s)	213
AspLEI	GCGC	3 cut(s)	182, 508, 532
AspS9I	GGNCC	5 cut(s)	187, 752, 763, 764, 1301
AsuHPI	GGTGA	4 cut(s)	57, 259, 267, 526
AvaI	CYCGRG	1 cut(s)	184
AvaII	GGWCC	2 cut(s)	752, 1301
BaeGI	GKGCMC	2 cut(s)	583, 767
BanI	GGYRCC	1 cut(s)	179
BanII	GRGCYC	1 cut(s)	767
Bbv12I	GWGCWC	1 cut(s)	583
BbvI	GCAGC	4 cut(s)	100, 670, 814, 1181
BccI	CCATC	6 cut(s)	416, 728, 866, 1264, 1286, 1358
BcgI	CGANNNNNNTGC	2 cut(s)	95, 129
BciT130I	CCWGG	2 cut(s)	548, 1236
BcoDI	GTCTC	1 cut(s)	224
BcuI	ACTAGT	1 cut(s)	665
BfaI	CTAG	4 cut(s)	603, 618, 666, 960
BfmI	CTRYAG	1 cut(s)	1104
BfoI	RGCGCY	2 cut(s)	183, 509
BglI	GCCNNNNNGGC	1 cut(s)	195
BisI	GCNGC	7 cut(s)	114, 117, 120, 684, 825, 828, 1170
BlsI	GCNGC	7 cut(s)	115, 118, 121, 685, 826, 829, 1171
Bme1390I	CCNGG	2 cut(s)	548, 1236
Bme18I	GGWCC	2 cut(s)	752, 1301
BmeT110I	CYCGRG	1 cut(s)	184
BmgT120I	GGNCC	5 cut(s)	187, 752, 763, 764, 1301
BmiI	GGNNCC	5 cut(s)	181, 764, 765, 1302, 1303
BmrFI	CCNGG	2 cut(s)	548, 1236
BsaHI	GRCGYC	2 cut(s)	138, 180
BsaJI	CCNNGG	5 cut(s)	183, 283, 331, 541, 1235
Bsc4I	CCNNNNNNNGG	8 cut(s)	169, 284, 484, 547, 622, 761, 772, 773
Bse1I	ACTGG	1 cut(s)	953
BseBI	CCWGG	2 cut(s)	548, 1236
BseDI	CCNNGG	5 cut(s)	183, 283, 331, 541, 1235
BseGI	GGATG	7 cut(s)	59, 260, 397, 739, 1256, 1294, 1369
BseLI	CCNNNNNNNGG	8 cut(s)	169, 284, 484, 547, 622, 761, 772, 773
BseMII	CTCAG	1 cut(s)	324
BseNI	ACTGG	1 cut(s)	953
BseRI	GAGGAG	1 cut(s)	152
BseSI	GKGCMC	2 cut(s)	583, 767
BseXI	GCAGC	4 cut(s)	100, 670, 814, 1181
Bsh1285I	CGRYCG	1 cut(s)	430
BshFI	GGCC	4 cut(s)	189, 288, 546, 765
BshNI	GGYRCC	1 cut(s)	179
BsiEI	CGRYCG	1 cut(s)	430
BsiHKAI	GWGCWC	1 cut(s)	583
BsiHKCI	CYCGRG	1 cut(s)	184
BslFI	GGGAC	5 cut(s)	125, 685, 759, 1062, 1314
BslI	CCNNNNNNNGG	8 cut(s)	169, 284, 484, 547, 622, 761, 772, 773
BsmAI	GTCTC	1 cut(s)	224
BsmBI	CGTCTC	1 cut(s)	224
BsmFI	GGGAC	5 cut(s)	125, 685, 759, 1062, 1314
BsmI	GAATGC	1 cut(s)	520
BsnI	GGCC	4 cut(s)	189, 288, 546, 765
BsoBI	CYCGRG	1 cut(s)	184
Bsp120I	GGGCCC	1 cut(s)	763
Bsp1286I	GDGCHC	2 cut(s)	583, 767
Bsp19I	CCATGG	1 cut(s)	331
BspACI	CCGC	8 cut(s)	28, 117, 120, 198, 255, 426, 479, 824
BspANI	GGCC	4 cut(s)	189, 288, 546, 765
BspCNI	CTCAG	1 cut(s)	323
BspLI	GGNNCC	5 cut(s)	181, 764, 765, 1302, 1303
BspT107I	GGYRCC	1 cut(s)	179
BsrBI	CCGCTC	1 cut(s)	30
BsrI	ACTGG	1 cut(s)	953
BssECI	CCNNGG	5 cut(s)	183, 283, 331, 541, 1235
BssNI	GRCGYC	2 cut(s)	138, 180
BssT1I	CCWWGG	2 cut(s)	283, 331
Bst2UI	CCWGG	2 cut(s)	548, 1236
Bst4CI	ACNGT	1 cut(s)	1108
Bst6I	CTCTTC	3 cut(s)	24, 913, 1084
BstACI	GRCGYC	2 cut(s)	138, 180
BstAPI	GCANNNNNTGC	1 cut(s)	1331
BstC8I	GCNNGC	1 cut(s)	822
BstDEI	CTNAG	2 cut(s)	310, 785
BstDSI	CCRYGG	1 cut(s)	331
BstENI	CCTNNNNNAGG	1 cut(s)	545
BstF5I	GGATG	7 cut(s)	59, 260, 397, 739, 1256, 1294, 1369
BstH2I	RGCGCY	2 cut(s)	183, 509
BstHHI	GCGC	3 cut(s)	182, 508, 532
BstMAI	GTCTC	1 cut(s)	224
BstMCI	CGRYCG	1 cut(s)	430
BstMWI	GCNNNNNNNGC	5 cut(s)	119, 186, 195, 1331, 1340
BstNI	CCWGG	2 cut(s)	548, 1236
BstSCI	CCNGG	2 cut(s)	546, 1234
BstSFI	CTRYAG	1 cut(s)	1104
BstSLI	GKGCMC	2 cut(s)	583, 767
BstV1I	GCAGC	4 cut(s)	100, 670, 814, 1181
BstXI	CCANNNNNNTGG	1 cut(s)	1351
BsuRI	GGCC	4 cut(s)	189, 288, 546, 765
BtgI	CCRYGG	1 cut(s)	331
BtgZI	GCGATG	1 cut(s)	435
BtsCI	GGATG	7 cut(s)	59, 260, 397, 739, 1256, 1294, 1369
BtsI	GCAGTG	1 cut(s)	343
BtsIMutI	CAGTG	1 cut(s)	343
Cac8I	GCNNGC	1 cut(s)	822
CfoI	GCGC	3 cut(s)	182, 508, 532
Cfr13I	GGNCC	5 cut(s)	187, 752, 763, 764, 1301
Csp6I	GTAC	1 cut(s)	860
CviAII	CATG	9 cut(s)	168, 332, 446, 636, 1044, 1052, 1061, 1340, 1345
CviQI	GTAC	1 cut(s)	860
DdeI	CTNAG	2 cut(s)	310, 785
DinI	GGCGCC	1 cut(s)	181
DraIII	CACNNNGTG	1 cut(s)	1312
DrdI	GACNNNNNNGTC	1 cut(s)	1133
DseDI	GACNNNNNNGTC	1 cut(s)	1133
EaeI	YGGCCR	1 cut(s)	544
Eam1104I	CTCTTC	3 cut(s)	24, 913, 1084
EarI	CTCTTC	3 cut(s)	24, 913, 1084
EciI	GGCGGA	1 cut(s)	213
Eco130I	CCWWGG	2 cut(s)	283, 331
Eco24I	GRGCYC	1 cut(s)	767
Eco32I	GATATC	1 cut(s)	1004
Eco47I	GGWCC	2 cut(s)	752, 1301
Eco47III	AGCGCT	1 cut(s)	507
Eco57I	CTGAAG	1 cut(s)	1149
Eco88I	CYCGRG	1 cut(s)	184
EcoNI	CCTNNNNNAGG	1 cut(s)	545
EcoO109I	RGGNCCY	2 cut(s)	763, 1301
EcoRI	GAATTC	2 cut(s)	291, 451
EcoRII	CCWGG	2 cut(s)	546, 1234
EcoRV	GATATC	1 cut(s)	1004
EcoT14I	CCWWGG	2 cut(s)	283, 331
EcoT38I	GRGCYC	1 cut(s)	767
EgeI	GGCGCC	1 cut(s)	181
EheI	GGCGCC	1 cut(s)	181
ErhI	CCWWGG	2 cut(s)	283, 331
Esp3I	CGTCTC	1 cut(s)	224
FaeI	CATG	9 cut(s)	171, 335, 449, 639, 1047, 1055, 1064, 1343, 1348
FaqI	GGGAC	5 cut(s)	125, 685, 759, 1062, 1314
FatI	CATG	9 cut(s)	167, 331, 445, 635, 1043, 1051, 1060, 1339, 1344
FauI	CCCGC	2 cut(s)	262, 486
FblI	GTMKAC	1 cut(s)	430
Fnu4HI	GCNGC	7 cut(s)	114, 117, 120, 684, 825, 828, 1170
FokI	GGATG	7 cut(s)	46, 247, 404, 746, 1243, 1301, 1376
FriOI	GRGCYC	1 cut(s)	767
Fsp4HI	GCNGC	7 cut(s)	114, 117, 120, 684, 825, 828, 1170
FspBI	CTAG	4 cut(s)	603, 618, 666, 960
GlaI	GCGC	3 cut(s)	181, 507, 531
GluI	GCNGC	7 cut(s)	114, 117, 120, 684, 825, 828, 1170
HaeII	RGCGCY	2 cut(s)	183, 509
HaeIII	GGCC	4 cut(s)	189, 288, 546, 765
HhaI	GCGC	3 cut(s)	182, 508, 532
Hin1I	GRCGYC	2 cut(s)	138, 180
Hin1II	CATG	9 cut(s)	171, 335, 449, 639, 1047, 1055, 1064, 1343, 1348
Hin6I	GCGC	3 cut(s)	180, 506, 530
HinP1I	GCGC	3 cut(s)	180, 506, 530
HincII	GTYRAC	2 cut(s)	431, 1020
HindII	GTYRAC	2 cut(s)	431, 1020
HinfI	GANTC	3 cut(s)	204, 488, 1217
HpaI	GTTAAC	1 cut(s)	1020
HphI	GGTGA	4 cut(s)	57, 259, 267, 526
Hpy166II	GTNNAC	4 cut(s)	431, 581, 782, 1020
Hpy188I	TCNGA	3 cut(s)	313, 987, 1095
Hpy188III	TCNNGA	5 cut(s)	403, 691, 699, 722, 1244
Hpy8I	GTNNAC	4 cut(s)	431, 581, 782, 1020
Hpy99I	CGWCG	4 cut(s)	137, 140, 251, 382
HpyAV	CCTTC	5 cut(s)	79, 274, 623, 722, 1022
HpyCH4III	ACNGT	1 cut(s)	1108
HpyCH4IV	ACGT	1 cut(s)	138
HpyCH4V	TGCA	4 cut(s)	520, 581, 686, 1325
HpyF10VI	GCNNNNNNNGC	5 cut(s)	119, 186, 195, 1331, 1340
HpyF3I	CTNAG	2 cut(s)	310, 785
HpySE526I	ACGT	1 cut(s)	138
Hsp92I	GRCGYC	2 cut(s)	138, 180
Hsp92II	CATG	9 cut(s)	171, 335, 449, 639, 1047, 1055, 1064, 1343, 1348
HspAI	GCGC	3 cut(s)	180, 506, 530
KasI	GGCGCC	1 cut(s)	179
KflI	GGGWCCC	1 cut(s)	1301
KspAI	GTTAAC	1 cut(s)	1020
LmnI	GCTCC	1 cut(s)	893
Lsp1109I	GCAGC	4 cut(s)	100, 670, 814, 1181
MaeI	CTAG	4 cut(s)	603, 618, 666, 960
MaeII	ACGT	1 cut(s)	138
MbiI	CCGCTC	1 cut(s)	30
MboII	GAAGA	6 cut(s)	11, 221, 881, 930, 1071, 1155
MfeI	CAATTG	1 cut(s)	304
MhlI	GDGCHC	2 cut(s)	583, 767
MluCI	AATT	6 cut(s)	291, 304, 451, 608, 886, 1223
Mly113I	GGCGCC	1 cut(s)	180
MmeI	TCCRAC	1 cut(s)	181
MroXI	GAANNNNTTC	1 cut(s)	213
MseI	TTAA	3 cut(s)	1019, 1121, 1280
MslI	CAYNNNNRTG	1 cut(s)	336
MspA1I	CMGCKG	1 cut(s)	113
MspR9I	CCNGG	2 cut(s)	548, 1236
MunI	CAATTG	1 cut(s)	304
Mva1269I	GAATGC	1 cut(s)	520
MvaI	CCWGG	2 cut(s)	548, 1236
MwoI	GCNNNNNNNGC	5 cut(s)	119, 186, 195, 1331, 1340
NarI	GGCGCC	1 cut(s)	180
NcoI	CCATGG	1 cut(s)	331
NlaIII	CATG	9 cut(s)	171, 335, 449, 639, 1047, 1055, 1064, 1343, 1348
NlaIV	GGNNCC	5 cut(s)	181, 764, 765, 1302, 1303
NmeAIII	GCCGAG	2 cut(s)	174, 522
PcsI	WCGNNNNNNNCGW	1 cut(s)	243
PctI	GAATGC	1 cut(s)	520
PdmI	GAANNNNTTC	1 cut(s)	213
PfeI	GAWTC	3 cut(s)	204, 488, 1217
PflFI	GACNNNGTC	2 cut(s)	137, 750
PkrI	GCNGC	7 cut(s)	115, 118, 121, 685, 826, 829, 1171
PluTI	GGCGCC	1 cut(s)	183
PpuMI	RGGWCCY	1 cut(s)	1301
Psp5II	RGGWCCY	1 cut(s)	1301
Psp6I	CCWGG	2 cut(s)	546, 1234
PspGI	CCWGG	2 cut(s)	546, 1234
PspN4I	GGNNCC	5 cut(s)	181, 764, 765, 1302, 1303
PspOMI	GGGCCC	1 cut(s)	763
PspPI	GGNCC	5 cut(s)	187, 752, 763, 764, 1301
PspPPI	RGGWCCY	1 cut(s)	1301
PsyI	GACNNNGTC	2 cut(s)	137, 750
PvuII	CAGCTG	1 cut(s)	113
RsaI	GTAC	1 cut(s)	861
RsaNI	GTAC	1 cut(s)	860
RseI	CAYNNNNRTG	1 cut(s)	336
SalI	GTCGAC	1 cut(s)	429
SaqAI	TTAA	3 cut(s)	1019, 1121, 1280
SatI	GCNGC	7 cut(s)	114, 117, 120, 684, 825, 828, 1170
Sau96I	GGNCC	5 cut(s)	187, 752, 763, 764, 1301
ScrFI	CCNGG	2 cut(s)	548, 1236
SduI	GDGCHC	2 cut(s)	583, 767
SfcI	CTRYAG	1 cut(s)	1104
SfoI	GGCGCC	1 cut(s)	181
SinI	GGWCC	2 cut(s)	752, 1301
SmiMI	CAYNNNNRTG	1 cut(s)	336
SpeI	ACTAGT	1 cut(s)	665
Sse9I	AATT	6 cut(s)	291, 304, 451, 608, 886, 1223
SsiI	CCGC	8 cut(s)	28, 117, 120, 198, 255, 426, 479, 824
SspDI	GGCGCC	1 cut(s)	179
SspMI	CTAG	4 cut(s)	603, 618, 666, 960
StyD4I	CCNGG	2 cut(s)	546, 1234
StyI	CCWWGG	2 cut(s)	283, 331
TaaI	ACNGT	1 cut(s)	1108
TaiI	ACGT	1 cut(s)	141
TaqI	TCGA	3 cut(s)	207, 430, 721
TasI	AATT	6 cut(s)	291, 304, 451, 608, 886, 1223
TauI	GCSGC	3 cut(s)	119, 122, 827
TfiI	GAWTC	3 cut(s)	204, 488, 1217
Tru1I	TTAA	3 cut(s)	1019, 1121, 1280
Tru9I	TTAA	3 cut(s)	1019, 1121, 1280
TscAI	CASTG	1 cut(s)	343
TseI	GCWGC	4 cut(s)	113, 683, 827, 1169
TspDTI	ATGAA	5 cut(s)	408, 741, 1032, 1041, 1149
TspGWI	ACGGA	1 cut(s)	965
TspRI	CASTG	1 cut(s)	343
Tth111I	GACNNNGTC	2 cut(s)	137, 750
VneI	GTGCAC	1 cut(s)	579
VpaK11BI	GGWCC	2 cut(s)	752, 1301
XagI	CCTNNNNNAGG	1 cut(s)	545
XapI	RAATTY	2 cut(s)	291, 451
XmiI	GTMKAC	1 cut(s)	430
XmnI	GAANNNNTTC	1 cut(s)	213
XspI	CTAG	4 cut(s)	603, 618, 666, 960
ZraI	GACGTC	1 cut(s)	139

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.