Regulator of chromosome condensation (RCC1) repeat
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G60870 AT5G60870 AT5G60870 AT5G60870 |
| fragaria_vesca | FvH4_6g39230 FvH4_6g39230 |
| malus_domestica | MD09G1144200.v1.1 |
| prunus_persica | Prupe.3G183700_v2.0.a1 Prupe.3G183700_v2.0.a1 |
| pyrus_communis | pycom09g06360 pycom17g12330 |
| rosa_chinensis | RchiOBHm_Chr2g0153071 |
| rosa_laevigata | RLG00000020674 |
| rosa_multiflora | Rmu_sc0000218.1_g000027 Rmu_sc0037109.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00095220 Rroxscaffold_2G00095250 |
| rosa_rugosa | Rorug02G0437100 |
| rosa_samantha | Rh2AG499300 Rh2BG510600 Rh2CG485700 Rh2DG522300 |
| rosa_wichuraiana | Rw2G040980 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 357 |
| AccB1I | GGYRCC | 1 cut(s) | 44 |
| AciI | CCGC | 2 cut(s) | 17, 63 |
| AcoI | YGGCCR | 2 cut(s) | 52, 102 |
| AcyI | GRCGYC | 2 cut(s) | 45, 354 |
| AfaI | GTAC | 1 cut(s) | 8 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 36, 97, 149, 173 |
| AgsI | TTSAA | 1 cut(s) | 280 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 272, 304 |
| AoxI | GGCC | 3 cut(s) | 39, 52, 102 |
| AspLEI | GCGC | 1 cut(s) | 47 |
| AspS9I | GGNCC | 1 cut(s) | 39 |
| AsuC2I | CCSGG | 1 cut(s) | 150 |
| AsuHPI | GGTGA | 2 cut(s) | 132, 331 |
| BalI | TGGCCA | 1 cut(s) | 104 |
| BanI | GGYRCC | 1 cut(s) | 44 |
| BccI | CCATC | 1 cut(s) | 100 |
| BceAI | ACGGC | 1 cut(s) | 98 |
| BcnI | CCSGG | 1 cut(s) | 150 |
| BfoI | RGCGCY | 1 cut(s) | 48 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 60 |
| Bme1390I | CCNGG | 1 cut(s) | 150 |
| BmgT120I | GGNCC | 1 cut(s) | 39 |
| BmiI | GGNNCC | 2 cut(s) | 40, 46 |
| BmrFI | CCNGG | 1 cut(s) | 150 |
| BmsI | GCATC | 3 cut(s) | 78, 288, 293 |
| BoxI | GACNNNNGTC | 1 cut(s) | 231 |
| BpuMI | CCSGG | 1 cut(s) | 150 |
| BsaHI | GRCGYC | 2 cut(s) | 45, 354 |
| BsaJI | CCNNGG | 1 cut(s) | 238 |
| BsaWI | WCCGGW | 1 cut(s) | 97 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 36, 97, 149, 173 |
| Bse118I | RCCGGY | 1 cut(s) | 41 |
| BseDI | CCNNGG | 1 cut(s) | 238 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 36, 97, 149, 173 |
| BseRI | GAGGAG | 3 cut(s) | 19, 112, 115 |
| BshFI | GGCC | 3 cut(s) | 41, 54, 104 |
| BshNI | GGYRCC | 1 cut(s) | 44 |
| BsiSI | CCGG | 5 cut(s) | 42, 51, 82, 98, 149 |
| BslFI | GGGAC | 1 cut(s) | 101 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 36, 97, 149, 173 |
| BsmFI | GGGAC | 1 cut(s) | 101 |
| BsmI | GAATGC | 1 cut(s) | 325 |
| BsnI | GGCC | 3 cut(s) | 41, 54, 104 |
| BspACI | CCGC | 2 cut(s) | 17, 63 |
| BspANI | GGCC | 3 cut(s) | 41, 54, 104 |
| BspLI | GGNNCC | 2 cut(s) | 40, 46 |
| BspT107I | GGYRCC | 1 cut(s) | 44 |
| BsrFI | RCCGGY | 1 cut(s) | 41 |
| BssAI | RCCGGY | 1 cut(s) | 41 |
| BssECI | CCNNGG | 1 cut(s) | 238 |
| BssNI | GRCGYC | 2 cut(s) | 45, 354 |
| BssT1I | CCWWGG | 1 cut(s) | 238 |
| Bst4CI | ACNGT | 1 cut(s) | 176 |
| BstACI | GRCGYC | 2 cut(s) | 45, 354 |
| BstC8I | GCNNGC | 1 cut(s) | 43 |
| BstH2I | RGCGCY | 1 cut(s) | 48 |
| BstHHI | GCGC | 1 cut(s) | 47 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 51, 60, 110 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 231 |
| BstSCI | CCNGG | 1 cut(s) | 148 |
| BsuRI | GGCC | 3 cut(s) | 41, 54, 104 |
| BtgZI | GCGATG | 1 cut(s) | 316 |
| Cac8I | GCNNGC | 1 cut(s) | 43 |
| CfoI | GCGC | 1 cut(s) | 47 |
| Cfr10I | RCCGGY | 1 cut(s) | 41 |
| Cfr13I | GGNCC | 1 cut(s) | 39 |
| Csp6I | GTAC | 1 cut(s) | 7 |
| CviAII | CATG | 1 cut(s) | 251 |
| CviJI | RGCY | 4 cut(s) | 41, 54, 85, 104 |
| CviKI_1 | RGCY | 4 cut(s) | 41, 54, 85, 104 |
| CviQI | GTAC | 1 cut(s) | 7 |
| DinI | GGCGCC | 1 cut(s) | 46 |
| EaeI | YGGCCR | 2 cut(s) | 52, 102 |
| Eco130I | CCWWGG | 1 cut(s) | 238 |
| EcoT14I | CCWWGG | 1 cut(s) | 238 |
| EgeI | GGCGCC | 1 cut(s) | 46 |
| EheI | GGCGCC | 1 cut(s) | 46 |
| ErhI | CCWWGG | 1 cut(s) | 238 |
| FaeI | CATG | 1 cut(s) | 254 |
| FaiI | YATR | 2 cut(s) | 252, 360 |
| FaqI | GGGAC | 1 cut(s) | 101 |
| FatI | CATG | 1 cut(s) | 250 |
| GlaI | GCGC | 1 cut(s) | 46 |
| HaeII | RGCGCY | 1 cut(s) | 48 |
| HaeIII | GGCC | 3 cut(s) | 41, 54, 104 |
| HapII | CCGG | 5 cut(s) | 42, 51, 82, 98, 149 |
| HhaI | GCGC | 1 cut(s) | 47 |
| Hin1I | GRCGYC | 2 cut(s) | 45, 354 |
| Hin1II | CATG | 1 cut(s) | 254 |
| Hin6I | GCGC | 1 cut(s) | 45 |
| HinP1I | GCGC | 1 cut(s) | 45 |
| HinfI | GANTC | 2 cut(s) | 280, 293 |
| HpaII | CCGG | 5 cut(s) | 42, 51, 82, 98, 149 |
| HphI | GGTGA | 2 cut(s) | 132, 331 |
| Hpy166II | GTNNAC | 1 cut(s) | 196 |
| Hpy188III | TCNNGA | 1 cut(s) | 369 |
| Hpy8I | GTNNAC | 1 cut(s) | 196 |
| Hpy99I | CGWCG | 2 cut(s) | 230, 356 |
| HpyCH4III | ACNGT | 1 cut(s) | 176 |
| HpyCH4IV | ACGT | 1 cut(s) | 354 |
| HpyCH4V | TGCA | 1 cut(s) | 325 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 51, 60, 110 |
| HpySE526I | ACGT | 1 cut(s) | 354 |
| Hsp92I | GRCGYC | 2 cut(s) | 45, 354 |
| Hsp92II | CATG | 1 cut(s) | 254 |
| HspAI | GCGC | 1 cut(s) | 45 |
| KasI | GGCGCC | 1 cut(s) | 44 |
| KroI | GCCGGC | 1 cut(s) | 41 |
| KroNI | GCCGGC | 1 cut(s) | 43 |
| LpnPI | CCDG | 5 cut(s) | 55, 64, 95, 111, 162 |
| LweI | GCATC | 3 cut(s) | 78, 288, 293 |
| MaeII | ACGT | 1 cut(s) | 354 |
| MboII | GAAGA | 1 cut(s) | 86 |
| MlsI | TGGCCA | 1 cut(s) | 104 |
| MluNI | TGGCCA | 1 cut(s) | 104 |
| Mly113I | GGCGCC | 1 cut(s) | 45 |
| MlyI | GAGTC | 1 cut(s) | 302 |
| MmeI | TCCRAC | 1 cut(s) | 48 |
| Mox20I | TGGCCA | 1 cut(s) | 104 |
| MroNI | GCCGGC | 1 cut(s) | 41 |
| MscI | TGGCCA | 1 cut(s) | 104 |
| Msp20I | TGGCCA | 1 cut(s) | 104 |
| MspI | CCGG | 5 cut(s) | 42, 51, 82, 98, 149 |
| MspR9I | CCNGG | 1 cut(s) | 150 |
| Mva1269I | GAATGC | 1 cut(s) | 325 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 51, 60, 110 |
| NaeI | GCCGGC | 1 cut(s) | 43 |
| NarI | GGCGCC | 1 cut(s) | 45 |
| NciI | CCSGG | 1 cut(s) | 150 |
| NgoMIV | GCCGGC | 1 cut(s) | 41 |
| NlaIII | CATG | 1 cut(s) | 254 |
| NlaIV | GGNNCC | 2 cut(s) | 40, 46 |
| NmeAIII | GCCGAG | 2 cut(s) | 39, 327 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 180 |
| PctI | GAATGC | 1 cut(s) | 325 |
| PdiI | GCCGGC | 1 cut(s) | 43 |
| PfeI | GAWTC | 1 cut(s) | 280 |
| PfoI | TCCNGGA | 1 cut(s) | 148 |
| PleI | GAGTC | 1 cut(s) | 301 |
| PluTI | GGCGCC | 1 cut(s) | 48 |
| PpsI | GAGTC | 1 cut(s) | 301 |
| PshAI | GACNNNNGTC | 1 cut(s) | 231 |
| PspN4I | GGNNCC | 2 cut(s) | 40, 46 |
| PspPI | GGNCC | 1 cut(s) | 39 |
| RsaI | GTAC | 1 cut(s) | 8 |
| RsaNI | GTAC | 1 cut(s) | 7 |
| Sau96I | GGNCC | 1 cut(s) | 39 |
| SchI | GAGTC | 1 cut(s) | 302 |
| ScrFI | CCNGG | 1 cut(s) | 150 |
| SetI | ASST | 6 cut(s) | 111, 145, 169, 207, 344, 357 |
| SfaNI | GCATC | 3 cut(s) | 78, 288, 293 |
| SfoI | GGCGCC | 1 cut(s) | 46 |
| SsiI | CCGC | 2 cut(s) | 17, 63 |
| SspDI | GGCGCC | 1 cut(s) | 44 |
| StyD4I | CCNGG | 1 cut(s) | 148 |
| StyI | CCWWGG | 1 cut(s) | 238 |
| TaaI | ACNGT | 1 cut(s) | 176 |
| TaiI | ACGT | 1 cut(s) | 357 |
| TaqI | TCGA | 2 cut(s) | 72, 296 |
| TfiI | GAWTC | 1 cut(s) | 280 |
| TspDTI | ATGAA | 1 cut(s) | 267 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 62 |
| ZraI | GACGTC | 1 cut(s) | 355 |